View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20125_low_17 (Length: 322)
Name: NF20125_low_17
Description: NF20125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20125_low_17 |
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| [»] scaffold0064 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 50302650 - 50302955
Alignment:
| Q |
1 |
aaaatactcttgacaggaacatccgtatataactgagcttaaattttcttgcctttaactaaaccaatcttgatcattggattatatctgattgttcatt |
100 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
50302650 |
aaaatactcttgacaggaacatcagtatataactgagcttaaattttcttgcctttaactaatccaatcttgatcattggattatatctgattgttcatt |
50302749 |
T |
|
| Q |
101 |
ggtttaaagatacatcttgcaagagctacatttcaatgacaagagcataaactttcttgttataacaacatcagagccaacagaagaaaatacatagtga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50302750 |
ggtttaaagatacatcttgcaagagctacatttcaatgacaagagcataaactttcttgttataacaacatcagagccaacagaagaaaatacatagtga |
50302849 |
T |
|
| Q |
201 |
aaactctcatcaccaccattattcacaaacaaacatttatcaatggattgcacttaatataatcataatgtttgaataccctgcaattaaatttaaggga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50302850 |
aaactctcatcaccaccattattcacaaacaaacatttatcaatggattacacttaatataatcataatgtttgaataccctgcaattaaatttaaggga |
50302949 |
T |
|
| Q |
301 |
aatgtt |
306 |
Q |
| |
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|||||| |
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|
| T |
50302950 |
aatgtt |
50302955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 153 - 296
Target Start/End: Complemental strand, 55325537 - 55325390
Alignment:
| Q |
153 |
tttcttgttataacaacatcagagccaacagaagaaaatacatagtgaaaactctcatcaccaccattattcacaaacaaacatttatcaatggattgca |
252 |
Q |
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||||||||||||| ||||| | |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
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| T |
55325537 |
tttcttgttataataacattaaagccaaaagaagaaaatacatagtgaaaactcttatcaccaccattattcacaaacaaacatttatcaatggattaca |
55325438 |
T |
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| Q |
253 |
cttaatataatcataatg----tttgaataccctgcaattaaatttaa |
296 |
Q |
| |
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||||||||||| ||||| || ||||||||||||||||||||||| |
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| T |
55325437 |
cttaatataataataataatgattcgaataccctgcaattaaatttaa |
55325390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 88 - 294
Target Start/End: Original strand, 26053320 - 26053527
Alignment:
| Q |
88 |
ctgattgttcattggtttaaagatacatcttgcaagagctacatttcaatgacaagagcataaactttcttgttataacaacatcagagccaacagaaga |
187 |
Q |
| |
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|||||||||| | |||| ||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||| || || |||||||| |||||| |
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| T |
26053320 |
ctgattgttcgtcggttcaaagacacattttgcaagagctacatttcaatgacaagagcatcaactttcttgttataataatattagagccaaaagaaga |
26053419 |
T |
|
| Q |
188 |
aaatacatagtgaaaactctcatcaccaccattattcacaaacaaacatttatcaatggattgcacttaatataatcataatgttt-gaataccctgcaa |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||| |
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| T |
26053420 |
aaatacatagtgaaaactctcatcaccaccattattcacaaacagacatttatcaatggattacacttaatataataataatgtttcgaataccctgcaa |
26053519 |
T |
|
| Q |
287 |
ttaaattt |
294 |
Q |
| |
|
|||||||| |
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|
| T |
26053520 |
ttaaattt |
26053527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 296
Target Start/End: Complemental strand, 9540214 - 9540154
Alignment:
| Q |
237 |
ttatcaatggattgcacttaatataatcataatg-tttgaataccctgcaattaaatttaa |
296 |
Q |
| |
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||||||||||||| |||||||||||| |||||| ||||||||||| ||||||||||||| |
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| T |
9540214 |
ttatcaatggattacacttaatataacaataatgttttgaataccccacaattaaatttaa |
9540154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 167 - 296
Target Start/End: Original strand, 32030117 - 32030247
Alignment:
| Q |
167 |
aacatcagagccaacagaagaaaatacatagtgaaaactctcatcaccaccattattcacaaacaaacatttatcaatggattgcacttaatataatcat |
266 |
Q |
| |
|
||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| || |
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| T |
32030117 |
aacattagagccaaaagaagaaaatagatagtgaaaactctcatcaccaccattattcacaaataaacatttatcaatggattacacttaatataacaat |
32030216 |
T |
|
| Q |
267 |
aatgttt-gaataccctgcaattaaatttaa |
296 |
Q |
| |
|
||||||| |||||||| |||||||||||||| |
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| T |
32030217 |
aatgtttcgaatacccagcaattaaatttaa |
32030247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 235 - 296
Target Start/End: Complemental strand, 11353941 - 11353879
Alignment:
| Q |
235 |
atttatcaatggattgcacttaatataatcataatgttt-gaataccctgcaattaaatttaa |
296 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||| ||||||| ||||||||||||||| |
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| T |
11353941 |
atttatcaatggattacacttaatataacaataatgtttcgaataccttgcaattaaatttaa |
11353879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 194 - 296
Target Start/End: Original strand, 53895 - 53997
Alignment:
| Q |
194 |
atagtgaaaactctcatcaccaccattattcacaaacaaacatttatcaatggattgcacttaatataatcataatgtttgaataccctgcaattaaatt |
293 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||| || ||||||||| |||||||||| |
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| T |
53895 |
atagtgaacactctcatcaccaccattattcgtaaacaaacatttatcaatggattacactttatataatcataattttcgaataccctacaattaaatt |
53994 |
T |
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| Q |
294 |
taa |
296 |
Q |
| |
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||| |
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|
| T |
53995 |
taa |
53997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 192 - 262
Target Start/End: Complemental strand, 23111573 - 23111503
Alignment:
| Q |
192 |
acatagtgaaaactctcatcaccaccattattcacaaacaaacatttatcaatggattgcacttaatataa |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
23111573 |
acatagtgaaaactctcatcaccaccattattcacaaacaaacatttaccaatggattacacttaatataa |
23111503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 296
Target Start/End: Original strand, 8636018 - 8636077
Alignment:
| Q |
237 |
ttatcaatggattgcacttaatataatcataatgttt-gaataccctgcaattaaatttaa |
296 |
Q |
| |
|
||||||||||||| | ||||||||| ||||||||| ||||||||||||||||||||||| |
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|
| T |
8636018 |
ttatcaatggattac-cttaatatatcaataatgtttcgaataccctgcaattaaatttaa |
8636077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 296
Target Start/End: Complemental strand, 35258479 - 35258414
Alignment:
| Q |
232 |
aacatttatcaatggattgcacttaatataatcataatgttt-gaataccctgcaattaaatttaa |
296 |
Q |
| |
|
|||| ||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||| |
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|
| T |
35258479 |
aacacttatcaatggattacacttaatatatcaataatgttttgaataccctgcaattaaatttaa |
35258414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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