View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20125_low_18 (Length: 310)
Name: NF20125_low_18
Description: NF20125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20125_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 22 - 296
Target Start/End: Original strand, 12733637 - 12733908
Alignment:
| Q |
22 |
aaaggagcggtgtgtgacatacagtgtgcaggtgcaattttcaccgcatttaacaaaaactttgccagcatcaggtccagtagtcctagttataacacat |
121 |
Q |
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| T |
12733637 |
aaaggagcagtgtgtgacatacagtgtgcaggtgcaattttcaccgcatttaacaaaaactttgccagcatcaggtccagtagtcctagttataacacat |
12733736 |
T |
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| Q |
122 |
gtccaacctttaccagtcttgcacaacacatttcccaatcccaggcctgagtttttgtcttgaactaccactttcctgcacaaagcttattggtttaact |
221 |
Q |
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| T |
12733737 |
gtccagcctttaccagtcttgcacaccacatttcccaatcccaggcctgagtttttgtcttgaactatcactttcctgcacaaagcttcttggtttaact |
12733836 |
T |
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| Q |
222 |
atgattaatttatgtatgaaaatggaacatgaagagtattattggtgctacaaattaatattaattaataaaact |
296 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||| |
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| T |
12733837 |
atgattaatttatgtatgaaaatggaacatgaagag---tattggtgctacaaagtaatattaataaataaaact |
12733908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 22 - 296
Target Start/End: Original strand, 12796421 - 12796692
Alignment:
| Q |
22 |
aaaggagcggtgtgtgacatacagtgtgcaggtgcaattttcaccgcatttaacaaaaactttgccagcatcaggtccagtagtcctagttataacacat |
121 |
Q |
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| T |
12796421 |
aaaggagcagtgtgtgacatacagtgtgcaggtgcaattttcaccgcatttaacaaaaactttgccagcatcaggtccagtagtcctagttataacacat |
12796520 |
T |
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| Q |
122 |
gtccaacctttaccagtcttgcacaacacatttcccaatcccaggcctgagtttttgtcttgaactaccactttcctgcacaaagcttattggtttaact |
221 |
Q |
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| T |
12796521 |
gtccagcctttaccagtcttgcacaccacatttcccaatcccaggcctgagtttttgtcttgaactatcactttcctgcacaaagcttcttggtttaact |
12796620 |
T |
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| Q |
222 |
atgattaatttatgtatgaaaatggaacatgaagagtattattggtgctacaaattaatattaattaataaaact |
296 |
Q |
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| T |
12796621 |
atgattaatttatgtatgaaaatggaacatgaagag---tattggtgctagaaattaatattaataaataaaact |
12796692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 31 - 247
Target Start/End: Original strand, 12741149 - 12741364
Alignment:
| Q |
31 |
gtgtgtgacatacagtgtgcaggtgcaattttcaccgcatttaacaaaaactttgccagcatcaggtccagtagtcctagttataacacatgtccaacct |
130 |
Q |
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|||| |||||||||| ||||| ||||||||||||| |||||| ||||||||||||| |||||||| || |||| ||||||||||||||||||||||| |
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| T |
12741149 |
gtgtttgacatacagcgtgcaattgcaattttcaccacatttagcaaaaactttgcctgcatcaggcccttcagtcttagttataacacatgtccaacct |
12741248 |
T |
|
| Q |
131 |
ttaccagtcttgcacaacacatttcccaatcccaggcctgagtttttgtcttgaactaccactttcctgcacaaagcttattggtttaactatgattaat |
230 |
Q |
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| T |
12741249 |
ttacccgtcttgcacaacacattgcccaagccttggcctgaatttttatcttgagctgggactttcctacacaaaacttgttgg-ttaattatgactttt |
12741347 |
T |
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| Q |
231 |
ttatgtatgaaaatgga |
247 |
Q |
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||||||||||| ||||| |
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| T |
12741348 |
ttatgtatgaatatgga |
12741364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 31 - 247
Target Start/End: Original strand, 12803964 - 12804179
Alignment:
| Q |
31 |
gtgtgtgacatacagtgtgcaggtgcaattttcaccgcatttaacaaaaactttgccagcatcaggtccagtagtcctagttataacacatgtccaacct |
130 |
Q |
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|||| |||||||||| ||||| ||||||||||||| |||||| |||||||||||||||||||||| || |||| ||||||||||||||||||||||| |
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| T |
12803964 |
gtgtttgacatacagcgtgcaattgcaattttcaccacatttagcaaaaactttgccagcatcaggcccttcagtcttagttataacacatgtccaacct |
12804063 |
T |
|
| Q |
131 |
ttaccagtcttgcacaacacatttcccaatcccaggcctgagtttttgtcttgaactaccactttcctgcacaaagcttattggtttaactatgattaat |
230 |
Q |
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|||| ||||||||||||||||| ||||| || ||||||| ||||| |||||| || |||||||| |||||| ||| |||| |||| ||||| | | |
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| T |
12804064 |
atacccgtcttgcacaacacattgcccaagccttggcctgaatttttatcttgagctgggactttcctacacaaaacttgttgg-ttaattatgactttt |
12804162 |
T |
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| Q |
231 |
ttatgtatgaaaatgga |
247 |
Q |
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||||||||||| ||||| |
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| T |
12804163 |
ttatgtatgaatatgga |
12804179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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