View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20125_low_2 (Length: 620)
Name: NF20125_low_2
Description: NF20125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20125_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 529; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 8 - 601
Target Start/End: Complemental strand, 3674499 - 3673902
Alignment:
| Q |
8 |
aggagcagagacacatgtaacgacacgcgtaatgggaacacatggttatgcggctcctgagtacatcatgacaggtatgactctaccatacaaaatgtta |
107 |
Q |
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| T |
3674499 |
aggagaagagacacatgtaacgacacgcgtaatgggaacacatggttatgcggctcctgagtacatcatgacaggtatgactctaccatacaaaatgtta |
3674400 |
T |
|
| Q |
108 |
accctgttttatgctgctcctggccgaactctagattatcagggttgttttcgctgataatttgagggttaagaagaagaannnnnnnnn--aatctaat |
205 |
Q |
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| T |
3674399 |
accctgttttatgctgctcctggccgaactctagattatcaggattgttttcgctgataattttagggttaagacgaagaaaaaaaaatttgaatctaat |
3674300 |
T |
|
| Q |
206 |
taacccttgcccgattgattatata--ggtcacctcacaacaaagagtgatgtgtatagctatggagtggttctattagaattgctcacaggaagaaggg |
303 |
Q |
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| T |
3674299 |
taacccttgcccgattgattatatataggtcacctcacaacaaagagtgatgtgtatagctatggagtggttctattagaattgctcacaggaagaaggg |
3674200 |
T |
|
| Q |
304 |
tagtggataagtcttcagaatcaagtagagggaaaaacttggtggaatgggcaagaccaatgttgagagatcaaaagaagctgcaccgtattatcgaccg |
403 |
Q |
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| T |
3674199 |
tagtggataagtcttcagaatcaagtagagggaaaaacttggtggaatgggcaagaccaatgttgagagatcaaaagaagctgcaccgtattatcgaccg |
3674100 |
T |
|
| Q |
404 |
tagacttgaaggtcaatatcctaccaaaggagcattgaaagttgctatgttagcttttaaatgtttgagtcatcacccaaatccaagacccttcatgagt |
503 |
Q |
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| T |
3674099 |
tagacttgaaggtcaatatcctaccaaaggagctttgaaagttgctatgttagcttttaaatgtttgagtcatcacccaaatccaagacccttcatgagt |
3674000 |
T |
|
| Q |
504 |
gatgttgttaaggttttggaaccacttcaagattttgatgatgtttttataggaccatttgtttatgttgctgtaaatgaaaatggtgacaaagatac |
601 |
Q |
| |
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| T |
3673999 |
gatgttgttaaggttttggaaccacttcaagattttgatgatgtttttataggaccatttgtttatgttgctgtaaatgaaaatggtgacaaagatac |
3673902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 577
Target Start/End: Original strand, 48554300 - 48554628
Alignment:
| Q |
246 |
aagagtgatgtgtatagctatggagtggttctattagaattgctcacaggaagaagggtagtggataagtcttcagaatcaagtagagggaaaaacttgg |
345 |
Q |
| |
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|||||||||||||||||||||||||| || | || |||||||| ||||||| |||||||||||||| ||| ||||| ||| | || |||| | | |
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| T |
48554300 |
aagagtgatgtgtatagctatggagtagtgttgttggaattgcttacaggaaagagggtagtggataa--aagcag-atcaaatagggagagaaacctag |
48554396 |
T |
|
| Q |
346 |
tggaatgggcaagaccaatgttgagagatcaaaagaagctgcaccgtattatcgaccgtagacttgaaggtcaatatcctaccaaaggagcattgaaagt |
445 |
Q |
| |
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|||||||||| ||||| || ||||||||||||| ||||| | | ||| || |||| ||| | || || || | ||||| |||||||| ||||| || |
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| T |
48554397 |
tggaatgggctagacctattttgagagatcaaagaaagcttcctcatatcatagacccaagattagagggacagtttcctattaaaggagctttgaaggt |
48554496 |
T |
|
| Q |
446 |
tgctatgttagcttttaaatgtttgagtcatcacccaaatccaagacccttcatgagtgatgttgttaaggttttggaaccacttcaagattttgatgat |
545 |
Q |
| |
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|||| || ||| |||||||||||| || || || |||||||| || ||||||||||| || || ||||||| |||||| || ||||||||| |
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| T |
48554497 |
tgctgctttgacttataaatgtttgagccaccatcctaatccaaggcctaatatgagtgatgtggtaaaatctttggaattacttcaggactttgatgat |
48554596 |
T |
|
| Q |
546 |
gtttttataggaccatttgtttatgttgctgt |
577 |
Q |
| |
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| || |||||||||||||| ||||| ||||| |
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| T |
48554597 |
atgttcataggaccatttgtgtatgtggctgt |
48554628 |
T |
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