View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20125_low_25 (Length: 261)
Name: NF20125_low_25
Description: NF20125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20125_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 16 - 245
Target Start/End: Complemental strand, 12802642 - 12802418
Alignment:
| Q |
16 |
agcatattgcatgttagggacactttatagtgtaataaatcgatcatggtaaggtcacccaaattatattttggataaattcaattatttaagccatttt |
115 |
Q |
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| T |
12802642 |
agcatattgcatgttagggacactttatagtgtaataagtcgatcatgttaaggtcacccaaattatattttggataaattcaattatttaagccatttt |
12802543 |
T |
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| Q |
116 |
tcacactccttattagtattacacaaccttacttaaactctatatttctcttcatttgcccatcacacctgggacatattttatctcctttttctttatt |
215 |
Q |
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||||||||||||||||| || |||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| || |
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| T |
12802542 |
tcacactccttattagt-----accaccttacttaaactctatctttctcttcatttgtccatcacacctaggacatattttatctcctttttctttctt |
12802448 |
T |
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| Q |
216 |
ccctttagaggtttattcactcaaggaaac |
245 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
12802447 |
ccctttagaggtttattcactcaaggaaac |
12802418 |
T |
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