View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20125_low_4 (Length: 580)
Name: NF20125_low_4
Description: NF20125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20125_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 465; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 1 - 566
Target Start/End: Complemental strand, 33789952 - 33789381
Alignment:
| Q |
1 |
tcatcacaaatttaaggacaaataattgtttggaaagagagtaaaactaatgtatatatatcattggagtggatt------ctctcaaatgannnnnnnn |
94 |
Q |
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| T |
33789952 |
tcatctcaaatttagggacaaataattgtttggaaagagagtaaaactaatgtatatat--cattggagtggattaatattctctaaaatgaattttttt |
33789855 |
T |
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| Q |
95 |
gaaaaataacgtggagattttgaccattgatctctacattattgataatgtaaagattaatggtcaaattttttgtaatgtttcctcagaggatccattt |
194 |
Q |
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| T |
33789854 |
gaaaaataacgtggagatcttgaccattgatctctacattattgataatgtagagattaatggtcaaaatttttgtaatgttttctcagaggatccattt |
33789755 |
T |
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| Q |
195 |
tcataatgatatgattaattaggttagtttggagcttactctaacaaagcaatcatggaagtgcattcggagcaaggcagcagtcatggatctatcttga |
294 |
Q |
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| T |
33789754 |
tcataatgatatgattaattaggttagtttggagcttactctgacaaagcaatcatggaagtgcatacggagcaaggcagcagtcatggatctatcttga |
33789655 |
T |
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| Q |
295 |
ttaaaacttctctcaacaacttgacgtacaatcaactctgctcttgggcagctagagctataaaatccaactttgagatcaccaaatgcaaagggaaaga |
394 |
Q |
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| T |
33789654 |
ttaaaacttctctcaacaacttgacgtacaatcaactctgctcttgggcagctagagctataaaatccaactttgagatcaccaaatgcaaagggaaaga |
33789555 |
T |
|
| Q |
395 |
gcaagaacattaagaagattaataaaatggttggcttcattttggatttgttgctatgcgtagtacttgctttatgaagttagttgttgtggattagtat |
494 |
Q |
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| T |
33789554 |
gcaagaacattaagaagattaataaaattgttggcttcattttggatttgttgctatgcgtagtacttgctttatgaagttagttgttgtggattagtat |
33789455 |
T |
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| Q |
495 |
ttgacaatggaagggaaatacatctata--tatagtggggattgaaagaaatttttcacttgtcaaagatgatg |
566 |
Q |
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| T |
33789454 |
ttgacaatggaagggaaatacatctatatatatagtggggattgaaagaaatttttcacttgtcaaagatgatg |
33789381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 111 - 161
Target Start/End: Original strand, 33789785 - 33789835
Alignment:
| Q |
111 |
attttgaccattgatctctacattattgataatgtaaagattaatggtcaa |
161 |
Q |
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| T |
33789785 |
attttgaccattaatctctacattatcaataatgtagagatcaatggtcaa |
33789835 |
T |
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