View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20125_low_6 (Length: 491)
Name: NF20125_low_6
Description: NF20125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20125_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 9 - 473
Target Start/End: Complemental strand, 50042301 - 50041836
Alignment:
| Q |
9 |
tcgaagaatattaccctaaggctctttaatttctgtttagcatgtcgagaacagcataagcagctttttgacaatgctctttctcttcatctaatgctgt |
108 |
Q |
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| T |
50042301 |
tcgaataatattaccctaaggctctttaatttctgtttagcatgtcgagaacagcataagcagctttttgacaatgctctttctcttcatctaatgctgt |
50042202 |
T |
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| Q |
109 |
tttcctctccatagcagaacctttacatttctcgatctcttcctcaatcactgcagaattttgattaatctcactgcaaaaatagtacaaaaacaatatt |
208 |
Q |
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| T |
50042201 |
tttcctctccatagcagaacctttacatttctcgatctcttcctcaatcactgcagaattttgattaatctcactgcaaaaatagtacaaaaacaatatt |
50042102 |
T |
|
| Q |
209 |
agatctgaaatcgaaaaacaatcactcaattttgttatcttataatataacaaaaatagtaatgatgtaaaaaatgaagaaataattatgattaagtaac |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50042101 |
agatctgaaatcgaaaaacaatcactcaattttgttatcttataacataacaaaaatagtaatgatgtaaaaaatgaagaaataattatgattaagtaac |
50042002 |
T |
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| Q |
309 |
taacgcgatcatcttaagcatgttctccattatagattgagcttcgtttgacatctctgcacg-attaagcaaagaaagatgaaattgaataatgaatca |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
50042001 |
taacgcgatcatcttaagcatgttctccattatagattgagcttcgtttgacatctctgcacgaattaagcaaagaaagatgaaattgaataatgaatca |
50041902 |
T |
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| Q |
408 |
aatcgtgtatcgtttggttcgaatggaagatcgcatcgagtatgattcgaattagagattaggttt |
473 |
Q |
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| T |
50041901 |
aatcgtgtatcgtttggttcgaatggaagatcgcatcgagtatgattcgaattagagattaggttt |
50041836 |
T |
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