View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20125_low_8 (Length: 469)

Name: NF20125_low_8
Description: NF20125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20125_low_8
NF20125_low_8
[»] chr6 (14 HSPs)
chr6 (19-469)||(22204569-22205019)
chr6 (178-469)||(20086144-20086435)
chr6 (30-469)||(24384793-24385231)
chr6 (168-469)||(20238057-20238358)
chr6 (168-469)||(22132041-22132342)
chr6 (197-469)||(20205464-20205736)
chr6 (197-469)||(22099487-22099759)
chr6 (178-469)||(21972028-21972316)
chr6 (19-132)||(20128188-20128301)
chr6 (61-126)||(20205807-20205872)
chr6 (61-126)||(21972368-21972433)
chr6 (61-126)||(22099830-22099895)
chr6 (49-133)||(18997276-18997360)
chr6 (49-133)||(20086480-20086564)
[»] scaffold0264 (1 HSPs)
scaffold0264 (168-469)||(16093-16394)
[»] scaffold0007 (2 HSPs)
scaffold0007 (303-469)||(5203-5369)
scaffold0007 (49-133)||(4931-5015)
[»] scaffold0074 (2 HSPs)
scaffold0074 (168-469)||(47547-47848)
scaffold0074 (49-126)||(47428-47505)
[»] chr5 (1 HSPs)
chr5 (397-469)||(9674594-9674666)
[»] chr1 (2 HSPs)
chr1 (397-469)||(47635209-47635281)
chr1 (58-119)||(47634876-47634937)


Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 19 - 469
Target Start/End: Original strand, 22204569 - 22205019
Alignment:
Q  19 aatgcaacagcaaaactgtcctcagactcggattgccatttatccaaacgagctatcatttggtacgatgagtgcatggttcgatactccaacaactctt 118  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||    
T  22204569 aatgcaacagaaaaactgtcctcagactcggattgccatttatccaaacgagctgtcatttggtacgaggagtgcatggttcgatactccaacacctctt 22204668  T
Q  119 tcttttccgctgttgccatttatccttggctttacatgtggaac-gtaggc--aacgtatctaacacaaaaagcttcatgcctttattgttttcgacgat 215  Q
    |||||||| ||||| | |    |||| |  |||  ||   |||| | || |  || || || |||||| |||||||||||||||||||||||||||||||    
T  22204669 tcttttccactgtttctacacgtcctggtgtttttataatgaacagcagtctcaatgtctcaaacacagaaagcttcatgcctttattgttttcgacgat 22204768  T
Q  216 gaataaaactgcagaggaagcagcagctccacttactgctgacaacaacaagaaatttgccacaaaagaagcaaagatttctgaatctcagaccctttac 315  Q
    |||||||||||||||||||||||||| ||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22204769 gaataaaactgcagaggaagcagcaggtccacttactgctgacaa---caagaaatttgccacaaaagaagcaaagatttctgaatctcagaccctttac 22204865  T
Q  316 tgcctagctcagtgcacgccggatttgtcccctaatgattgcagaacctgtctcaatagtgctattgaggtacttcctagctgttgtgatggaaaggtgg 415  Q
    ||||||||||||||||||||||| ||||| ||   |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  22204866 tgcctagctcagtgcacgccggacttgtcacccggtgattgcagaacctgtcttaatagtgctattgaggaacttcctagctgttgtgatggaaaggtgg 22204965  T
Q  416 gtgggagagttctttttcctagctgtaatattaggtatgaactatatccttttt 469  Q
    ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22204966 gtgcgagagttgtttttcctagctgtaatattaggtatgaactatatccttttt 22205019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 178 - 469
Target Start/End: Complemental strand, 20086435 - 20086144
Alignment:
Q  178 aacacaaaaagcttcatgcctttattgttttcgacgatgaataaaactgcagaggaagcagcagctccacttactgctgacaacaacaagaaatttgcca 277  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||    
T  20086435 aacacagaaagcttcatgcctttattgttttcgacgatggataaaactgcagaggaagcagcaggtccacttactactgacaacaacaagaagtttgcca 20086336  T
Q  278 caaaagaagcaaagatttctgaatctcagaccctttactgcctagctcagtgcacgccggatttgtcccctaatgattgcagaacctgtctcaatagtgc 377  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||   |||||||||||||||||||||||||||    
T  20086335 caaaagaagcaaggatttctgaatctcagaccctttactgtctagctcagtgcacgccggacttgtcacccggtgattgcagaacctgtctcaatagtgc 20086236  T
Q  378 tattgaggtacttcctagctgttgtgatggaaaggtgggtgggagagttctttttcctagctgtaatattaggtatgaactatatccttttt 469  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  20086235 tattgagaaacttcctagctgttgtgatggaaaggtgggtgggagagttctttttcctagctgtaatgttaggtatgaattatatccttttt 20086144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 30 - 469
Target Start/End: Original strand, 24384793 - 24385231
Alignment:
Q  30 aaaactgtcctcagactcggattgccatttatccaaacgagctatcatttggtacgatgagtgcatggttcgatactccaacaactctttcttttccgct 129  Q
    |||||||||||||||||| ||||||  ||| ||||||||||||||||||||||| || ||||||||||||| |||||||||| | | |||||||||| ||    
T  24384793 aaaactgtcctcagactcagattgctctttctccaaacgagctatcatttggtatgaggagtgcatggttcaatactccaactattatttcttttccact 24384892  T
Q  130 gttgccatttatccttggctttacatgtggaacgtaggcaacgtatctaacacaaaaagcttcatgcctttattgttttcgacgatgaataaaactgcag 229  Q
    ||||| ||   |||| |||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||| |||||||| ||||||| ||||||||    
T  24384893 gttgcaatacgtcctgggctttacatgtggaacgcaggcaacatatctaacacaaaaagcttcatggctttattattttcgacaatgaatataactgcag 24384992  T
Q  230 aggaagcagcagctccacttactgctgacaacaacaagaaatttgccacaaaagaagcaaagatttctgaatctcagaccctttactgcctagctcagtg 329  Q
    ||||||||| || |||||||||||||  |||||||||||| ||| ||||||  || |||    ||||  | | | |||| |||||||   ||||||||||    
T  24384993 aggaagcagtaggtccacttactgcttgcaacaacaagaagttttccacaagtgatgcatctgtttcaaatttttagacgctttactatttagctcagtg 24385092  T
Q  330 cacgccggatttgtcccctaatgattgcagaacctgtctcaatagtgctattgaggtacttcctagctgttgtgatggaaaggtgggtgggagagttctt 429  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||    |||||    |||||||||||||||  |||| ||||||||| |    
T  24385093 cacgccagacttgtcccctaatgattgcagaacctgtctcaatagtgctattgaatctcttccactatgttgtgatggaaagcagggt-ggagagttcct 24385191  T
Q  430 tttcctagctgtaatattaggtatgaactatatccttttt 469  Q
    |||||||||||||| |||||||||||||||| ||||||||    
T  24385192 tttcctagctgtaacattaggtatgaactatttccttttt 24385231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 168 - 469
Target Start/End: Complemental strand, 20238358 - 20238057
Alignment:
Q  168 caacgtatctaacacaaaaagcttcatgcctttattgttttcgacgatgaataaaactgcagaggaagcagcagctccacttactgctgacaacaacaag 267  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| | ||||||||||| ||||||  ||| |    
T  20238358 caacgtatctaacacaaaaagcttcatgcctatattgttttcgacgatgaataaaactgcagagaaagcagcgggtccacttactggtgacaaggacacg 20238259  T
Q  268 aaatttgccacaaaagaagcaaagatttctgaatctcagaccctttactgcctagctcagtgcacgccggatttgtcccctaatgattgcagaacctgtc 367  Q
    || |||||||| | ||||  | |||||||||||||||| || |||||||| ||||||||||||||||| || |||||    ||||||||||||||||| |    
T  20238258 aagtttgccacgatagaaaaacagatttctgaatctcaaacgctttactgtctagctcagtgcacgccagacttgtcgttcaatgattgcagaacctgcc 20238159  T
Q  368 tcaatagtgctattgaggtacttcctagctgt-tgtgatggaaaggtgggtgggagagttctttttcctagctgtaatattaggtatgaactatatcctt 466  Q
    ||  | ||||||||  |  |||| | |  ||| | ||||||||||  ||||||||||  | | | |||||| ||||||||||||||||| ||||||||||    
T  20238158 tcggttgtgctattaggaaactttc-aaatgtgtatgatggaaagcagggtgggagaaatttatatcctagttgtaatattaggtatgagctatatcctt 20238060  T
Q  467 ttt 469  Q
    |||    
T  20238059 ttt 20238057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 168 - 469
Target Start/End: Complemental strand, 22132342 - 22132041
Alignment:
Q  168 caacgtatctaacacaaaaagcttcatgcctttattgttttcgacgatgaataaaactgcagaggaagcagcagctccacttactgctgacaacaacaag 267  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| | ||||||||||| ||||||  ||| |    
T  22132342 caacgtatctaacacaaaaagcttcatgcctatattgttttcgacgatgaataaaactgcagagaaagcagcgggtccacttactggtgacaaggacacg 22132243  T
Q  268 aaatttgccacaaaagaagcaaagatttctgaatctcagaccctttactgcctagctcagtgcacgccggatttgtcccctaatgattgcagaacctgtc 367  Q
    || |||||||| | ||||  | |||||||||||||||| || |||||||| ||||||||||||||||| || |||||    ||||||||||||||||| |    
T  22132242 aagtttgccacgatagaaaaacagatttctgaatctcaaacgctttactgtctagctcagtgcacgccagacttgtcgttcaatgattgcagaacctgcc 22132143  T
Q  368 tcaatagtgctattgaggtacttcctagctgt-tgtgatggaaaggtgggtgggagagttctttttcctagctgtaatattaggtatgaactatatcctt 466  Q
    ||  | ||||||||  |  |||| | |  ||| | ||||||||||  ||||||||||  | | | |||||| ||||||||||||||||| ||||||||||    
T  22132142 tcggttgtgctattaggaaactttc-aaatgtgtatgatggaaagcagggtgggagaaatttatatcctagttgtaatattaggtatgagctatatcctt 22132044  T
Q  467 ttt 469  Q
    |||    
T  22132043 ttt 22132041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 197 - 469
Target Start/End: Complemental strand, 20205736 - 20205464
Alignment:
Q  197 ctttattgttttcgacgatgaataaaactgcagaggaagcagcagctccacttactgctgacaacaacaagaaatttgccacaaaagaagca-aagattt 295  Q
    ||||||||||| | || ||||||  ||||| ||| |||||||||  |||||||| || |||||| ||| |||| ||||| || ||||||||| ||||||     
T  20205736 ctttattgtttacaaccatgaatcgaactgtagatgaagcagcaagtccacttattggtgacaaaaacgagaagtttgcaaccaaagaagcacaagatt- 20205638  T
Q  296 ctgaatctcagaccctttactgcctagctcagtgcacgccggatttgtcccctaatgattgcagaacctgtctcaatagtgctattgaggtacttcctag 395  Q
    | |||  ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||  | || | |     
T  20205637 cggaaaatcagaccctttactgtctagctcagtgcacgccggatttgtcgcctaatgattgcagaacctgtctcagtagtgctattgagaaagtttcaaa 20205538  T
Q  396 ctgttgtgatggaaaggtgggtgggagagttctttttcctagctgtaatattaggtatgaactatatccttttt 469  Q
      ||||||||||||||||||| |||||| |||||| ||||||||||||| | ||||||||| ||||||| ||||    
T  20205537 gagttgtgatggaaaggtgggagggagatttctttatcctagctgtaatgtaaggtatgaattatatccatttt 20205464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 197 - 469
Target Start/End: Complemental strand, 22099759 - 22099487
Alignment:
Q  197 ctttattgttttcgacgatgaataaaactgcagaggaagcagcagctccacttactgctgacaacaacaagaaatttgccacaaaagaagca-aagattt 295  Q
    ||||||||||| | || ||||||  ||||| ||| |||||||||  |||||||| || |||||| ||| |||| ||||| || ||||||||| ||||||     
T  22099759 ctttattgtttacaaccatgaatcgaactgtagatgaagcagcaagtccacttattggtgacaaaaacgagaagtttgcaaccaaagaagcacaagatt- 22099661  T
Q  296 ctgaatctcagaccctttactgcctagctcagtgcacgccggatttgtcccctaatgattgcagaacctgtctcaatagtgctattgaggtacttcctag 395  Q
    | |||  ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||  | || | |     
T  22099660 cggaaaatcagaccctttactgtctagctcagtgcacgccggatttgtcgcctaatgattgcagaacctgtctcagtagtgctattgagaaagtttcaaa 22099561  T
Q  396 ctgttgtgatggaaaggtgggtgggagagttctttttcctagctgtaatattaggtatgaactatatccttttt 469  Q
      ||||||||||||||||||| |||||| |||||| ||||||||||||| | ||||||||| ||||||| ||||    
T  22099560 gagttgtgatggaaaggtgggagggagatttctttatcctagctgtaatgtaaggtatgaattatatccatttt 22099487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 178 - 469
Target Start/End: Complemental strand, 21972316 - 21972028
Alignment:
Q  178 aacacaaaaagcttcatgcctttattgttttcgacgatgaataaaactgcagaggaagcagcagctccacttactgctgacaacaacaagaaatttgcca 277  Q
    ||||| ||||||||| || ||||||||||||| || ||||||  ||||||||| |||||||||  ||| |||| || |||||| ||||||   ||||| |    
T  21972316 aacacgaaaagcttcgtgtctttattgttttcaaccatgaatcgaactgcagacgaagcagcaagtccgcttagtggtgacaagaacaag---tttgcaa 21972220  T
Q  278 caaaagaagcaaagatttctgaatctcagaccctttactgcctagctcagtgcacgccggatttgtcccctaatgattgcagaacctgtctcaatagtgc 377  Q
    |||||||||||    |||| |||  ||||||||||||| | |||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||    
T  21972219 caaaagaagcacgagtttcggaaaatcagaccctttacagtctagctcagtgcacgctggatttgtcgcctaatgattgcagaacctgtctcactagtgc 21972120  T
Q  378 tattgaggtacttcctagctgttgtgatggaaaggtgggtgggagagttctttttcctagctgtaatattaggtatgaactatatccttttt 469  Q
    |||||||  |||| |     | |||| ||||||||| ||||||||| |||||| ||||||||||||| ||||||||||| ||||||| ||||    
T  21972119 tattgagacactttcacaaagctgtgttggaaaggttggtgggagatttctttatcctagctgtaatgttaggtatgaattatatccatttt 21972028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 20128301 - 20128188
Alignment:
Q  19 aatgcaacagcaaaactgtcctcagactcggattgccatttatccaaacgagctatcatttggtacgatgagtgcatggttcgatactccaacaactctt 118  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||    
T  20128301 aatgcaacagaaaaactgtcctcagactcggattgccatttatccaaacgagctgtcatttggtacgaggagtgcatggttcgatactccaacacctctt 20128202  T
Q  119 tcttttccgctgtt 132  Q
    |||||||| |||||    
T  20128201 tcttttccactgtt 20128188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 61 - 126
Target Start/End: Complemental strand, 20205872 - 20205807
Alignment:
Q  61 tccaaacgagctatcatttggtacgatgagtgcatggttcgatactccaacaactctttcttttcc 126  Q
    ||||||| |||| | ||||||||||  |||||||||||||||||||| ||||  ||||||||||||    
T  20205872 tccaaacaagctgtgatttggtacggcgagtgcatggttcgatactctaacatatctttcttttcc 20205807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 61 - 126
Target Start/End: Complemental strand, 21972433 - 21972368
Alignment:
Q  61 tccaaacgagctatcatttggtacgatgagtgcatggttcgatactccaacaactctttcttttcc 126  Q
    ||||||| |||| | ||||||||||  |||||||||||||||| |||  |||||||||||||||||    
T  21972433 tccaaacaagctgtgatttggtacggcgagtgcatggttcgattctctgacaactctttcttttcc 21972368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 61 - 126
Target Start/End: Complemental strand, 22099895 - 22099830
Alignment:
Q  61 tccaaacgagctatcatttggtacgatgagtgcatggttcgatactccaacaactctttcttttcc 126  Q
    ||||||| |||| | ||||||||||  |||||||||||||||||||| ||||  ||||||||||||    
T  22099895 tccaaacaagctgtgatttggtacggcgagtgcatggttcgatactctaacatatctttcttttcc 22099830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 49 - 133
Target Start/End: Complemental strand, 18997360 - 18997276
Alignment:
Q  49 gattgccatttatccaaacgagctatcatttggtacgatgagtgcatggttcgatactccaacaactctttcttttccgctgttg 133  Q
    ||||||| ||||||||||| |||  ||||||  ||||| ||||| |  ||||| |||||| |||||| |||||||||| ||||||    
T  18997360 gattgccctttatccaaacaagcagtcatttattacgacgagtgtaatgttcgttactcctacaactatttcttttccactgttg 18997276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 49 - 133
Target Start/End: Complemental strand, 20086564 - 20086480
Alignment:
Q  49 gattgccatttatccaaacgagctatcatttggtacgatgagtgcatggttcgatactccaacaactctttcttttccgctgttg 133  Q
    |||||||  |||||||||| |||| | ||||  |||||  | ||||||||||||||||||| | | |||||||||||| ||||||    
T  20086564 gattgcccattatccaaacaagctgtaatttattacgaaaattgcatggttcgatactccagcgagtctttcttttccactgttg 20086480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 168 - 469
Target Start/End: Complemental strand, 16394 - 16093
Alignment:
Q  168 caacgtatctaacacaaaaagcttcatgcctttattgttttcgacgatgaataaaactgcagaggaagcagcagctccacttactgctgacaacaacaag 267  Q
    |||||| || ||||| |||||||||||||||||||||||||| ||   | |  |||||||||| |||||||||  |||||||| ||  ||||  || |||    
T  16394 caacgtctcaaacacgaaaagcttcatgcctttattgttttcaacctggtacgaaactgcagatgaagcagcacgtccacttattggagacataaaaaag 16295  T
Q  268 aaatttgccacaaaagaagcaaagatttctgaatctcagaccctttactgcctagctcagtgcacgccggatttgtcccctaatgattgcagaacctgtc 367  Q
    || ||||| ||||||||||||    ||||  ||  ||||||||| ||||| ||||||||||||||||| || ||||| |||||  |||||||||||||||    
T  16294 aagtttgcaacaaaagaagcacgagtttcgaaaaatcagaccctatactgtctagctcagtgcacgccagacttgtctcctaacaattgcagaacctgtc 16195  T
Q  368 tcaatagtgctattgaggtacttcctagctgttgtgatggaaaggtgggtgggagagttctttttcctagctgtaatattaggtatgaactatatccttt 467  Q
    || ||| |||||||||  | ||||||   ||| || |||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||    
T  16194 tctatactgctattgatcttcttcctctgtgtggttatggaaaggtgggtgggagatttcttttgcctagctgtaatgttaggtatgaactatatccttt 16095  T
Q  468 tt 469  Q
    ||    
T  16094 tt 16093  T

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Target: scaffold0007 (Bit Score: 91; Significance: 7e-44; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 303 - 469
Target Start/End: Original strand, 5203 - 5369
Alignment:
Q  303 tcagaccctttactgcctagctcagtgcacgccggatttgtcccctaatgattgcagaacctgtctcaatagtgctattgaggtacttcctagctgttgt 402  Q
    ||||||||| ||||| ||||  |||||||||||||| |||||||||||  ||||||||||||||||| |||| ||||||||    |||||||    ||||    
T  5203 tcagaccctgtactgtctagaacagtgcacgccggacttgtcccctaacaattgcagaacctgtctccatagagctattgaatatcttcctatggtttgt 5302  T
Q  403 gatggaaaggtgggtgggagagttctttttcctagctgtaatattaggtatgaactatatccttttt 469  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5303 gatggaaaggagggtgggagagttgtttttcctagctgtaatattaggtatgaactatatccttttt 5369  T

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Target: scaffold0007; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 49 - 133
Target Start/End: Original strand, 4931 - 5015
Alignment:
Q  49 gattgccatttatccaaacgagctatcatttggtacgatgagtgcatggttcgatactccaacaactctttcttttccgctgttg 133  Q
    |||||||  |||||||||| |||| | ||||  |||||  | ||||||||||||||||||||  | |||||||||||| ||||||    
T  4931 gattgcccattatccaaacaagctgtaatttattacgaaaattgcatggttcgatactccaatgagtctttcttttccactgttg 5015  T

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Target: scaffold0074 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 168 - 469
Target Start/End: Original strand, 47547 - 47848
Alignment:
Q  168 caacgtatctaacacaaaaagcttcatgcctttattgttttcgacgatgaataaaactgcagaggaagcagcagctccacttactgctgacaacaacaag 267  Q
    |||||| || ||||| |||||||||||||||||||||||||| ||   | |  |||||||||| |||||||||  |||||||| ||  || |  || |||    
T  47547 caacgtctcaaacacgaaaagcttcatgcctttattgttttcaaccgggtacgaaactgcagatgaagcagcacgtccacttattggagatataaaaaag 47646  T
Q  268 aaatttgccacaaaagaagcaaagatttctgaatctcagaccctttactgcctagctcagtgcacgccggatttgtcccctaatgattgcagaacctgtc 367  Q
    || ||||| ||||||||||||    ||||  ||   |||||||||||||| ||||||||||||||||| || ||||| |||||  |||||||||||||||    
T  47647 aagtttgcaacaaaagaagcacgagtttcgaaaaaacagaccctttactgtctagctcagtgcacgccagacttgtctcctaacaattgcagaacctgtc 47746  T
Q  368 tcaatagtgctattgaggtacttcct-agctgttgtgatggaaaggtgggtgggagagttctttttcctagctgtaatattaggtatgaactatatcctt 466  Q
    || ||| |||||||||  | ||| || |||| || ||||||||||  ||||||||  ||| ||||||||||||||||| |||||||||||||||||||||    
T  47747 tctatactgctattgattttcttgctcagct-ttttgatggaaagcagggtgggatggttttttttcctagctgtaatgttaggtatgaactatatcctt 47845  T
Q  467 ttt 469  Q
    |||    
T  47846 ttt 47848  T

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Target: scaffold0074; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 126
Target Start/End: Original strand, 47428 - 47505
Alignment:
Q  49 gattgccatttatccaaacgagctatcatttggtacgatgagtgcatggttcgatactccaacaactctttcttttcc 126  Q
    |||||||  |||||||||  |||||| |||||||| ||  | ||||||||||||||||||||  | ||||||||||||    
T  47428 gattgcccattatccaaagaagctattatttggtatgacaattgcatggttcgatactccaatgagtctttcttttcc 47505  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 397 - 469
Target Start/End: Complemental strand, 9674666 - 9674594
Alignment:
Q  397 tgttgtgatggaaaggtgggtgggagagttctttttcctagctgtaatattaggtatgaactatatccttttt 469  Q
    |||||||||||||||   |||||||||||| | ||||||||||||||| |||| |||||| |||| |||||||    
T  9674666 tgttgtgatggaaagcaaggtgggagagttttgtttcctagctgtaatgttagatatgaattatacccttttt 9674594  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 397 - 469
Target Start/End: Original strand, 47635209 - 47635281
Alignment:
Q  397 tgttgtgatggaaaggtgggtgggagagttctttttcctagctgtaatattaggtatgaactatatccttttt 469  Q
    |||||||||||||||   |||||||||||| | ||||||||||||||| |||| |||||| |||| |||||||    
T  47635209 tgttgtgatggaaagcaaggtgggagagttttgtttcctagctgtaatgttagatatgaattatacccttttt 47635281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 58 - 119
Target Start/End: Original strand, 47634876 - 47634937
Alignment:
Q  58 ttatccaaacgagctatcatttggtacgatgagtgcatggttcgatactccaacaactcttt 119  Q
    |||||||||| |||| | || |||||||| ||||||||||||||||| ||||||| ||||||    
T  47634876 ttatccaaacaagctgtaatctggtacgacgagtgcatggttcgatattccaacacctcttt 47634937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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