View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20126_high_1 (Length: 716)

Name: NF20126_high_1
Description: NF20126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20126_high_1
NF20126_high_1
[»] chr4 (35 HSPs)
chr4 (14-691)||(10202462-10203121)
chr4 (242-333)||(9268023-9268115)
chr4 (242-333)||(10468724-10468816)
chr4 (242-331)||(3990921-3991011)
chr4 (244-333)||(12585402-12585492)
chr4 (243-318)||(45667232-45667308)
chr4 (242-333)||(49028507-49028599)
chr4 (243-333)||(52677553-52677644)
chr4 (245-333)||(25225793-25225882)
chr4 (241-327)||(9450908-9450995)
chr4 (241-318)||(10286409-10286487)
chr4 (241-331)||(17931287-17931378)
chr4 (240-312)||(9449713-9449786)
chr4 (240-327)||(28451526-28451614)
chr4 (242-331)||(17932121-17932211)
chr4 (240-312)||(28450748-28450821)
chr4 (241-332)||(4437679-4437771)
chr4 (239-325)||(49028260-49028347)
chr4 (236-325)||(36098739-36098829)
chr4 (240-325)||(52677804-52677890)
chr4 (244-332)||(4439018-4439107)
chr4 (242-318)||(12585158-12585235)
chr4 (242-325)||(10468480-10468564)
chr4 (246-333)||(21038119-21038206)
chr4 (240-317)||(21038374-21038450)
chr4 (244-320)||(16067581-16067656)
chr4 (243-312)||(21325695-21325765)
chr4 (242-294)||(12315855-12315907)
chr4 (266-333)||(622082-622149)
chr4 (244-318)||(622316-622391)
chr4 (264-333)||(16067346-16067416)
chr4 (242-292)||(49287430-49287480)
chr4 (244-309)||(53892253-53892319)
chr4 (240-294)||(32617603-32617657)
chr4 (241-294)||(27509632-27509685)
[»] chr5 (17 HSPs)
chr5 (240-333)||(23322342-23322436)
chr5 (240-333)||(5841121-5841215)
chr5 (241-333)||(42792947-42793040)
chr5 (240-332)||(34634066-34634159)
chr5 (240-327)||(9379928-9380016)
chr5 (242-325)||(43183230-43183314)
chr5 (238-318)||(5840873-5840954)
chr5 (257-333)||(25088419-25088496)
chr5 (257-333)||(25146388-25146465)
chr5 (245-331)||(1501077-1501164)
chr5 (240-325)||(23322096-23322182)
chr5 (243-325)||(9380705-9380788)
chr5 (240-317)||(15933354-15933432)
chr5 (240-294)||(15933611-15933665)
chr5 (242-307)||(20244521-20244587)
chr5 (245-318)||(25089049-25089123)
chr5 (245-318)||(25147018-25147092)
[»] chr3 (27 HSPs)
chr3 (230-333)||(27864787-27864891)
chr3 (241-334)||(24107150-24107244)
chr3 (232-329)||(27865046-27865144)
chr3 (241-317)||(31596747-31596824)
chr3 (242-333)||(38758852-38758943)
chr3 (240-325)||(3171487-3171573)
chr3 (241-311)||(16907929-16908000)
chr3 (241-331)||(46684097-46684188)
chr3 (241-320)||(24107408-24107488)
chr3 (240-333)||(54446259-54446354)
chr3 (240-329)||(19860489-19860579)
chr3 (240-317)||(38758606-38758684)
chr3 (234-291)||(11422371-11422428)
chr3 (238-305)||(46685537-46685605)
chr3 (242-302)||(18025880-18025941)
chr3 (239-289)||(3171775-3171825)
chr3 (244-325)||(54446022-54446104)
chr3 (241-317)||(14812426-14812503)
chr3 (262-333)||(21792360-21792433)
chr3 (253-320)||(21792228-21792296)
chr3 (265-331)||(19860736-19860802)
chr3 (266-317)||(18026111-18026163)
chr3 (234-294)||(25629423-25629483)
chr3 (240-294)||(30385179-30385233)
chr3 (241-294)||(42592399-42592452)
chr3 (244-294)||(18024567-18024617)
chr3 (240-294)||(18024923-18024977)
[»] scaffold0069 (2 HSPs)
scaffold0069 (244-333)||(19897-19987)
scaffold0069 (244-325)||(20151-20232)
[»] chr6 (19 HSPs)
chr6 (439-594)||(1180942-1181103)
chr6 (241-333)||(5367659-5367751)
chr6 (241-333)||(3659196-3659288)
chr6 (439-554)||(1186319-1186434)
chr6 (239-331)||(8286785-8286878)
chr6 (240-331)||(8287411-8287503)
chr6 (340-431)||(1185907-1185998)
chr6 (351-433)||(1180553-1180635)
chr6 (240-318)||(3658950-3659029)
chr6 (241-320)||(28944244-28944324)
chr6 (242-286)||(5367407-5367451)
chr6 (242-294)||(9899560-9899612)
chr6 (242-274)||(13119207-13119239)
chr6 (588-619)||(1186404-1186435)
chr6 (244-275)||(3720052-3720083)
chr6 (240-294)||(29836156-29836210)
chr6 (237-294)||(8938881-8938938)
chr6 (241-294)||(19048243-19048296)
chr6 (241-294)||(30859919-30859972)
[»] chr2 (15 HSPs)
chr2 (231-333)||(38695132-38695235)
chr2 (242-332)||(18166633-18166724)
chr2 (233-327)||(14159197-14159292)
chr2 (240-325)||(42963020-42963106)
chr2 (240-332)||(4410620-4410713)
chr2 (240-333)||(42962766-42962860)
chr2 (239-327)||(4734202-4734291)
chr2 (239-325)||(14160408-14160495)
chr2 (242-327)||(4733304-4733390)
chr2 (240-320)||(18171337-18171418)
chr2 (239-325)||(38694885-38694972)
chr2 (246-331)||(4409164-4409250)
chr2 (241-294)||(39110071-39110124)
chr2 (240-294)||(36099291-36099345)
chr2 (240-294)||(45001051-45001105)
[»] scaffold0008 (2 HSPs)
scaffold0008 (240-333)||(266864-266958)
scaffold0008 (240-325)||(266619-266705)
[»] chr7 (13 HSPs)
chr7 (241-333)||(4265220-4265313)
chr7 (242-318)||(8905640-8905717)
chr7 (240-327)||(18471756-18471844)
chr7 (240-311)||(18470137-18470209)
chr7 (241-320)||(25749311-25749390)
chr7 (240-311)||(25749396-25749468)
chr7 (243-321)||(8329037-8329115)
chr7 (243-320)||(4264977-4265055)
chr7 (244-312)||(8328197-8328266)
chr7 (245-321)||(8342654-8342731)
chr7 (244-318)||(8905898-8905973)
chr7 (437-484)||(8552732-8552779)
chr7 (239-294)||(19069958-19070013)
[»] chr8 (11 HSPs)
chr8 (243-333)||(18203300-18203391)
chr8 (236-327)||(10535994-10536086)
chr8 (244-325)||(30905978-30906060)
chr8 (240-312)||(10536792-10536865)
chr8 (243-327)||(32539435-32539520)
chr8 (243-328)||(30905397-30905483)
chr8 (236-318)||(18202767-18202850)
chr8 (242-294)||(9237762-9237814)
chr8 (239-293)||(9237309-9237363)
chr8 (266-307)||(32538283-32538325)
chr8 (241-294)||(10398704-10398757)
[»] chr1 (9 HSPs)
chr1 (242-327)||(9114819-9114905)
chr1 (242-312)||(14903806-14903877)
chr1 (239-327)||(14904581-14904670)
chr1 (240-327)||(17690921-17691009)
chr1 (241-333)||(37499416-37499509)
chr1 (234-327)||(17689728-17689821)
chr1 (238-318)||(30335231-30335311)
chr1 (244-289)||(37499178-37499223)
chr1 (240-310)||(9116064-9116134)
[»] scaffold0006 (2 HSPs)
scaffold0006 (243-331)||(93633-93721)
scaffold0006 (265-318)||(93890-93944)


Alignment Details
Target: chr4 (Bit Score: 420; Significance: 0; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 14 - 691
Target Start/End: Original strand, 10202462 - 10203121
Alignment:
Q  14 gagttagacttcttcatgtacttaactttatgaacataaggtgtatagatgaaacnnnnnnnncttcctttaacattgtgttaaacaaaaaattaacaag 113  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||         |||| |||||||||||||||||||||||||||||||    
T  10202462 gagttagacttcttcatgtacttagctttatgaacataaggtgtatagatgaaactttttttt-ttcccttaacattgtgttaaacaaaaaattaacaag 10202560  T
Q  114 cacaccatttcatctagtccnnnnnnnngcatacaatttaatcgtaattttttattcacatttagtctaaattacaaaccat---gtttatcttttcgga 210  Q
    |||| |||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||| |||    
T  10202561 cacaacatttcatctagtccaaaaaaaagcatacaatttaatcgtaattttttattcacatttagtctaaattacaaaccatattgtttatcttttggga 10202660  T
Q  211 atgagaacaaaaattcaacaaatatataataggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcc-ataagttattaacgt 309  Q
    |||||||| ||||||||              || ||||||||||||||| ||| |||| ||||||| ||||||||||||||||| |||| ||||||||||    
T  10202661 atgagaaccaaaattca--------------ggtttaattaatgatttgatcctttaaattatttgctggttacattttggtcccataaattattaacgt 10202746  T
Q  310 tacaatttggtaccttaagttagttacaatttggatgggtttatcaagattgatccaataatcatgaattattcaatcaagtttttctcattgagggtat 409  Q
    ||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10202747 tacaatttgatgccttaagttatttacaatttggatgggtttatcaagattgatccaataatcatgaattattcaatcaagtttttctcattgagggtat 10202846  T
Q  410 tgtcactaaggcgagtactttttgaatagacaagtggtttcttgaattgtttccgaaattcccttttattgagagttttattttaaattattgtgacatg 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  10202847 tgtcactaaggcgagtactttttgaatagacaagtggtttcttgaattgtttccgaaattcccttttcttgagagttttattttaaattcttgtgacatg 10202946  T
Q  510 cctgaaaagattgatatttcaagtgttcgacttaagaggttggagttttggcgtt------acttgaaggaggttaatattgattctccaacctcttaag 603  Q
    ||||||||||||||||||||             ||||||||||||||||||||||      |||| ||||||||||||||||||||| ||||||||||||    
T  10202947 cctgaaaagattgatatttc-------------aagaggttggagttttggcgttgcgataacttaaaggaggttaatattgattcttcaacctcttaag 10203033  T
Q  604 tcgaacacttgaaatagcaaataagaagaccttaagtcaactgaaaaattctacaatatcttttacaatgttttgtacggtcaaatgt 691  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10203034 tcgaacacttgaaatagcaaataagaagaccttaagtcaactgaaaaattctacaatatcttttacaatgttttgtacagtcaaatgt 10203121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 242 - 333
Target Start/End: Original strand, 9268023 - 9268115
Alignment:
Q  242 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaagttagt 333  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||    
T  9268023 ggcttaattaatgatttggtcccttaagttatttattggttacattttggtcccataagttattaaagttacaatttggtcccttaagttagt 9268115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 242 - 333
Target Start/End: Complemental strand, 10468816 - 10468724
Alignment:
Q  242 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttggtaccttaagttagt 333  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||    
T  10468816 ggcttaattaatcatttggtcccttaagttatttgttggttacattttggtctcataagttattaacgttacaatttggtccgttaagttagt 10468724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 242 - 331
Target Start/End: Complemental strand, 3991011 - 3990921
Alignment:
Q  242 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaagtta 331  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  3991011 ggcttaattattgatttggtcccttaagttaattgttggttacattttggtcccataagttattaacgttacaatttggtcccttaagtta 3990921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 244 - 333
Target Start/End: Complemental strand, 12585492 - 12585402
Alignment:
Q  244 cttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttggtaccttaagttagt 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||| ||||||||||||    
T  12585492 cttaattaatgatttggtcccttaagttatttgttggttacattttgatctcataagttattaacattacaatttggtcccttaagttagt 12585402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 243 - 318
Target Start/End: Original strand, 45667232 - 45667308
Alignment:
Q  243 gcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  45667232 gcttaattaatgatttggtcccttaagttatttgttggttacattttggtctcataagttattaacgttacaatttg 45667308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 242 - 333
Target Start/End: Complemental strand, 49028599 - 49028507
Alignment:
Q  242 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaagttagt 333  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||| ||||||||||||| ||||||||||||    
T  49028599 ggcttaattaatgatttggtcccttaagttatttattggttacattttggtcccataaattattaatgttacaatttggtcccttaagttagt 49028507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 243 - 333
Target Start/End: Original strand, 52677553 - 52677644
Alignment:
Q  243 gcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaagttagt 333  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| | ||||||||||    
T  52677553 gcttaattaattatttggtcccttaagttatttgttggttacaatttggtcccataagttattaacgttacaatttggtccattaagttagt 52677644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 245 - 333
Target Start/End: Original strand, 25225793 - 25225882
Alignment:
Q  245 ttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttggtaccttaagttagt 333  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||  |||||||||||    
T  25225793 ttaattaatgatttggtcccttaagttatttgttggttatattttggtctcataagttattaacgttacaattttgtcgcttaagttagt 25225882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 241 - 327
Target Start/End: Complemental strand, 9450995 - 9450908
Alignment:
Q  241 aggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaa 327  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||  |||||| ||||||    
T  9450995 aggcttaattaatgatttggtcccttaagttatttgttggttacgttttggtcccataagttattaacgttacgttttggtcccttaa 9450908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 241 - 318
Target Start/End: Original strand, 10286409 - 10286487
Alignment:
Q  241 aggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||    
T  10286409 aggcttaattaatgatttggtcccttaagttatttgttggttacattttagtcccattagttattaacgttacaatttg 10286487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 241 - 331
Target Start/End: Original strand, 17931287 - 17931378
Alignment:
Q  241 aggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaagtta 331  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||  |||| ||||||||||    
T  17931287 aggcttaattaatgaattggtcccttaagttatttattggttacaatttggtcccataagttattaacgttacaaaatggtcccttaagtta 17931378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 240 - 312
Target Start/End: Original strand, 9449713 - 9449786
Alignment:
Q  240 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttac 312  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||    
T  9449713 taggcttaattaatgatttggtccattaagttatttgttggttacgttttggtctcataagttattaacgttac 9449786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 240 - 327
Target Start/End: Complemental strand, 28451614 - 28451526
Alignment:
Q  240 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttggtaccttaa 327  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||| ||||  |||||| ||||||    
T  28451614 taggcttaattaatgatttagtcccttaagttatttgttggttacattttggtctcataagatattaacattacgttttggtcccttaa 28451526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 242 - 331
Target Start/End: Complemental strand, 17932211 - 17932121
Alignment:
Q  242 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaagtta 331  Q
    |||||||||||||| ||||||||||||||||||| ||||||||| |||||| |||||||||||||| |||||||  |||| ||||||||||    
T  17932211 ggcttaattaatgaattggtcccttaagttatttattggttacaatttggtcccataagttattaaggttacaaaatggtcccttaagtta 17932121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 240 - 312
Target Start/End: Original strand, 28450748 - 28450821
Alignment:
Q  240 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttac 312  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||| |||||    
T  28450748 taggcttaattaatgatttggtcccttaaattatttgttggttacattttgatcccataagttattaatgttac 28450821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 241 - 332
Target Start/End: Original strand, 4437679 - 4437771
Alignment:
Q  241 aggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaagttag 332  Q
    |||||||||||||| |||||||| |||| |||||||||||||||| |||||| ||||||||||||||||||||  |||||| | |||||||||    
T  4437679 aggcttaattaatggtttggtccattaaattatttgttggttacaatttggtcccataagttattaacgttacgttttggtcctttaagttag 4437771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 239 - 325
Target Start/End: Original strand, 49028260 - 49028347
Alignment:
Q  239 ataggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtacctt 325  Q
    |||||| ||||| ||||| |||||||||||||||||||||||||||||||| || |||||| ||||||||||||| ||||||| ||||    
T  49028260 ataggcctaattgatgatgtggtcccttaagttatttgttggttacattttagtcccataaattattaacgttaccatttggtccctt 49028347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 236 - 325
Target Start/End: Original strand, 36098739 - 36098829
Alignment:
Q  236 ataataggcttaattaatgatttggtcccttaagttatttgttggttacatttt-ggtccataagttattaacgttacaatttggtacctt 325  Q
    ||||||| ||||||||||||| ||||| |||||||||||||||||||| ||||| | ||||||| |||||||||||| |||||||| ||||    
T  36098739 ataatagacttaattaatgatgtggtctcttaagttatttgttggttatattttagttccataaattattaacgttataatttggtccctt 36098829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 240 - 325
Target Start/End: Complemental strand, 52677890 - 52677804
Alignment:
Q  240 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttggtacctt 325  Q
    ||||| ||||||||||| |||||||||| ||||||||||||||||||||| ||| ||||||||||||| |||| |||||||| ||||    
T  52677890 taggcataattaatgatgtggtcccttaggttatttgttggttacattttagtctcataagttattaatgttataatttggtccctt 52677804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 244 - 332
Target Start/End: Complemental strand, 4439107 - 4439018
Alignment:
Q  244 cttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttggtaccttaagttag 332  Q
    ||||||||||||  |||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||  ||||||  ||||||||||    
T  4439107 cttaattaatgacgtggtccctaaagttatttgttggttacaatttggtctcataagttattaacgttacgttttggtctcttaagttag 4439018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 242 - 318
Target Start/End: Original strand, 12585158 - 12585235
Alignment:
Q  242 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttg 318  Q
    ||||||||||||||  |||||||||||||||||||||| ||||||||| ||| |||||||||||||| ||||||||||    
T  12585158 ggcttaattaatgacgtggtcccttaagttatttgttgattacattttagtctcataagttattaacattacaatttg 12585235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 242 - 325
Target Start/End: Original strand, 10468480 - 10468564
Alignment:
Q  242 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttggtacctt 325  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||| |||   |||||| |||||||||||||||||| ||||    
T  10468480 ggcttaattactgatgtggtcccttaagttatttgttggttacattttagtcatctaagtttttaacgttacaatttggtccctt 10468564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 246 - 333
Target Start/End: Original strand, 21038119 - 21038206
Alignment:
Q  246 taattaatgatttggtcccttaagttatttgttggttacattttggtcca-taagttattaacgttacaatttggtaccttaagttagt 333  Q
    |||||||||||||||||| ||||||| ||||||| ||| |||||||| || ||||||||||||||||||||||||| | ||||||||||    
T  21038119 taattaatgatttggtcc-ttaagttgtttgttgattatattttggttcaataagttattaacgttacaatttggtcctttaagttagt 21038206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 240 - 317
Target Start/End: Complemental strand, 21038450 - 21038374
Alignment:
Q  240 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggtccataagttattaacgttacaattt 317  Q
    |||| |||||||||||| || |||||||||||||||| |||||||||||| |||| |||||||||||||||| |||||    
T  21038450 taggtttaattaatgatgtgatcccttaagttatttgctggttacattttagtcc-taagttattaacgttataattt 21038374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 244 - 320
Target Start/End: Complemental strand, 16067656 - 16067581
Alignment:
Q  244 cttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttggt 320  Q
    |||||||||||||   |||| |||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  16067656 cttaattaatgata--gtcctttaaattatttgttggttacattttagtctcataagttattaacgttacaatttggt 16067581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 243 - 312
Target Start/End: Complemental strand, 21325765 - 21325695
Alignment:
Q  243 gcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttac 312  Q
    ||||||||||||||||| || ||||| |||||||||||||||||||| ||| ||| |||||||||||||||    
T  21325765 gcttaattaatgatttgatctcttaaattatttgttggttacattttagtcacattagttattaacgttac 21325695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 12315855 - 12315907
Alignment:
Q  242 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcc 294  Q
    |||||||||||||||||||||| ||||||||||||| ||||||| ||||||||    
T  12315855 ggcttaattaatgatttggtcctttaagttatttgtaggttacaatttggtcc 12315907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 266 - 333
Target Start/End: Original strand, 622082 - 622149
Alignment:
Q  266 taagttatttgttggttacattttggtccataagttattaacgttacaatttggtaccttaagttagt 333  Q
    |||||||||||||| ||| |||||| |||||| ||||||||||||| |||||||| |||||| |||||    
T  622082 taagttatttgttgattatattttgatccatacgttattaacgttataatttggtcccttaaattagt 622149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 244 - 318
Target Start/End: Complemental strand, 622391 - 622316
Alignment:
Q  244 cttaattaatgatttggtcccttaagttatttgttggttacattttggtcc-ataagttattaacgttacaatttg 318  Q
    ||||||||||||| || ||||||||||||||||||||||||||||| | || ||| |||||||| ||||| |||||    
T  622391 cttaattaatgatgtgatcccttaagttatttgttggttacattttagacctatatgttattaatgttacgatttg 622316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 264 - 333
Target Start/End: Original strand, 16067346 - 16067416
Alignment:
Q  264 cttaagttatttgttggttacatttt-ggtccataagttattaacgttacaatttggtaccttaagttagt 333  Q
    |||||||||||||||||||||||||| | || |||| |||||||||||||||||||||   ||||||||||    
T  16067346 cttaagttatttgttggttacattttagttctataaattattaacgttacaatttggtcttttaagttagt 16067416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 242 - 292
Target Start/End: Original strand, 49287430 - 49287480
Alignment:
Q  242 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggt 292  Q
    ||||||||||||||||| ||| ||| |||||||||||||||| ||||||||    
T  49287430 ggcttaattaatgatttagtctctttagttatttgttggttaaattttggt 49287480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 244 - 309
Target Start/End: Original strand, 53892253 - 53892319
Alignment:
Q  244 cttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgt 309  Q
    ||||||||||||||||||  |||||||||||| | ||||||| || ||| |||||||||||||||||    
T  53892253 cttaattaatgatttggtttcttaagttatttataggttacaattgggtcccataagttattaacgt 53892319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 240 - 294
Target Start/End: Complemental strand, 32617657 - 32617603
Alignment:
Q  240 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcc 294  Q
    |||||||||||| | |||||||||||||| |||||| |||||| | |||||||||    
T  32617657 taggcttaattactcatttggtcccttaacttattttttggtttcgttttggtcc 32617603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 241 - 294
Target Start/End: Original strand, 27509632 - 27509685
Alignment:
Q  241 aggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcc 294  Q
    ||||||||||| | |||||||||||||| |||||| |||||| | |||||||||    
T  27509632 aggcttaattactcatttggtcccttaacttattttttggtttcgttttggtcc 27509685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 6e-39; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 240 - 333
Target Start/End: Complemental strand, 23322436 - 23322342
Alignment:
Q  240 taggcttaattaatgatttggtcccttaagttatttgttggttacattttgg-tccataagttattaacgttacaatttggtaccttaagttagt 333  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  23322436 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggttccataagttattaacgttacaatttggtcccttaagttagt 23322342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 240 - 333
Target Start/End: Complemental strand, 5841215 - 5841121
Alignment:
Q  240 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaagttagt 333  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||| | ||||||||||    
T  5841215 taggcttaattaatgatttggtctcttaacttatttgttggttacattttggtcccataaattattaacgttacaatttggttctttaagttagt 5841121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 241 - 333
Target Start/End: Original strand, 42792947 - 42793040
Alignment:
Q  241 aggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaagttagt 333  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||| ||||||| ||||||||||||| ||||||||||||    
T  42792947 aggcttaattaatgatttggtcgcttaagttatttgttggtttcattttggtcccataaattattaatgttacaatttggtcccttaagttagt 42793040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 240 - 332
Target Start/End: Original strand, 34634066 - 34634159
Alignment:
Q  240 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaagttag 332  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||| | |||||||||    
T  34634066 taggcttaattaatgatgtggtcctttaagttatttgttggttacaatttggtcccataagttattaacgttacattttggtccattaagttag 34634159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 240 - 327
Target Start/End: Original strand, 9379928 - 9380016
Alignment:
Q  240 taggcttaattaatgatttggtcccttaagttatttgttggttacattttgg-tccataagttattaacgttacaatttggtaccttaa 327  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||  |||||| ||||||    
T  9379928 taggcttaattaatgaattggtcccttaagttatttgttggttacattttggttccacaagttattaacgttacgttttggtcccttaa 9380016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 242 - 325
Target Start/End: Original strand, 43183230 - 43183314
Alignment:
Q  242 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtacctt 325  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||| ||||    
T  43183230 ggcttaattaataatttggtcccttaagttatttgttggttacattttggtcccataaattattaacattacaatttggtccctt 43183314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 238 - 318
Target Start/End: Original strand, 5840873 - 5840954
Alignment:
Q  238 aataggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttg 318  Q
    |||||| |||||||||||| |||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||    
T  5840873 aataggtttaattaatgatgtggtcccttaagttatttgttggttatattttagtgccataagttattaacgttacaatttg 5840954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 257 - 333
Target Start/End: Original strand, 25088419 - 25088496
Alignment:
Q  257 ttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttggtaccttaagttagt 333  Q
    |||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||| ||||||    
T  25088419 ttggtcccgtaagttatttgttggttacattttggtcgcataaattattaacgttacaatttggtcccttatgttagt 25088496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 257 - 333
Target Start/End: Original strand, 25146388 - 25146465
Alignment:
Q  257 ttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttggtaccttaagttagt 333  Q
    |||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||| ||||||    
T  25146388 ttggtcccgtaagttatttgttggttacattttggtcgcataaattattaacgttacaatttggtcccttatgttagt 25146465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 245 - 331
Target Start/End: Complemental strand, 1501164 - 1501077
Alignment:
Q  245 ttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaagtta 331  Q
    ||||||||| ||||| ||||||||||||||| |||||| ||||||||| |||||| |||||||||||||| |||||| ||||||||||    
T  1501164 ttaattaatcatttgatcccttaagttatttattggtttcattttggtcccataaattattaacgttacattttggtcccttaagtta 1501077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 240 - 325
Target Start/End: Original strand, 23322096 - 23322182
Alignment:
Q  240 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtacctt 325  Q
    ||||||||||||||||| | |||  ||||||||||||||||||||||||| || |||||||||||||| ||||||||||||| ||||    
T  23322096 taggcttaattaatgatgtagtctattaagttatttgttggttacattttagtcccataagttattaatgttacaatttggtccctt 23322182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 243 - 325
Target Start/End: Complemental strand, 9380788 - 9380705
Alignment:
Q  243 gcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtacctt 325  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||| | |||||||||||||| |||||  |||||| ||||    
T  9380788 gcttaattaatgaattgatcccttaagttatttgttggttacattttgatcccataagttattaatgttacgttttggtccctt 9380705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 240 - 317
Target Start/End: Original strand, 15933354 - 15933432
Alignment:
Q  240 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaattt 317  Q
    |||||||||| |||||| ||||||||||  |||||||||||||| ||||| ||| ||||||||||||||||||||||||    
T  15933354 taggcttaatcaatgatgtggtcccttatattatttgttggttatattttagtctcataagttattaacgttacaattt 15933432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 240 - 294
Target Start/End: Complemental strand, 15933665 - 15933611
Alignment:
Q  240 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcc 294  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  15933665 taggcttaattcatgatttggtcccttaagttatttgttggttacattttagtcc 15933611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 20244587 - 20244521
Alignment:
Q  242 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaac 307  Q
    ||||||||||||||||| ||  ||||| ||||||||||||||||||||||| |||||| ||||||||    
T  20244587 ggcttaattaatgattttgttacttaaattatttgttggttacattttggtcccataaattattaac 20244521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 245 - 318
Target Start/End: Complemental strand, 25089123 - 25089049
Alignment:
Q  245 ttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttg 318  Q
    |||||||||||  |||| ||||||||||||| ||||||| ||||| ||  ||||||||||||| | |||||||||    
T  25089123 ttaattaatgacgtggttccttaagttatttattggttatattttagtgtcataagttattaatgctacaatttg 25089049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 245 - 318
Target Start/End: Complemental strand, 25147092 - 25147018
Alignment:
Q  245 ttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttg 318  Q
    |||||||||||  |||| ||||||||||||| ||||||| ||||| ||  ||||||||||||| | |||||||||    
T  25147092 ttaattaatgacgtggttccttaagttatttattggttatattttagtgtcataagttattaatgctacaatttg 25147018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 9e-38; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 230 - 333
Target Start/End: Original strand, 27864787 - 27864891
Alignment:
Q  230 aaatatataataggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaag 328  Q
    |||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  27864787 aaatataatataggcttaattaatgatttggtcccgtaagttatttgttggttacattttggtcccataagttattaacgttacaatttggtcccttaag 27864886  T
Q  329 ttagt 333  Q
    |||||    
T  27864887 ttagt 27864891  T

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Target: chr3; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 241 - 334
Target Start/End: Original strand, 24107150 - 24107244
Alignment:
Q  241 aggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaagttagtt 334  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||    
T  24107150 aggcttaattaatgatttggtcccttgagttatttgttggttacattttggtcccataagttattaacgttacaatttggtcacttaagttagtt 24107244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 232 - 329
Target Start/End: Complemental strand, 27865144 - 27865046
Alignment:
Q  232 atatataataggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaagt 329  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| | ||||||    
T  27865144 atatattataggcttaattaatgatgtggtcccttaagttatttgttggttacattttagtcccataagttattaacgttacaatttggtcctttaagt 27865046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 241 - 317
Target Start/End: Complemental strand, 31596824 - 31596747
Alignment:
Q  241 aggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaattt 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  31596824 aggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcccataagttattaacgttaccattt 31596747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 242 - 333
Target Start/End: Complemental strand, 38758943 - 38758852
Alignment:
Q  242 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaagttagt 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||| || |||||||||    
T  38758943 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcccataagttatcaacgttataatttggt-ccctaagttagt 38758852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 240 - 325
Target Start/End: Original strand, 3171487 - 3171573
Alignment:
Q  240 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtacctt 325  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||| ||||    
T  3171487 taggcttaattaatgatgtggtcccttaagttatttgttggttacattttagtcccataagttattaatgttacaatttggtccctt 3171573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 241 - 311
Target Start/End: Original strand, 16907929 - 16908000
Alignment:
Q  241 aggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgtta 311  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  16907929 aggcttaattaatgatttggtcccttaagttatttgttggttacgttttggtcccataagttattaacgtta 16908000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 241 - 331
Target Start/End: Original strand, 46684097 - 46684188
Alignment:
Q  241 aggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaagtta 331  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||| ||||  |||||| ||||||||||    
T  46684097 aggcttaattaatgatttggtcgcttaagttatttgttggttacattttgatcccataagttattaacattacgttttggtcccttaagtta 46684188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 241 - 320
Target Start/End: Complemental strand, 24107488 - 24107408
Alignment:
Q  241 aggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggt 320  Q
    |||||||||||||||| |||||| |||||||| |||||||||||||||| || ||||||||||||||||||||||||||||    
T  24107488 aggcttaattaatgatgtggtccattaagttaattgttggttacattttagtcccataagttattaacgttacaatttggt 24107408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 240 - 333
Target Start/End: Complemental strand, 54446354 - 54446259
Alignment:
Q  240 taggcttaattaatgatttggtcccttaagttatttgttggttaca-ttttggtcc-ataagttattaacgttacaatttggtaccttaagttagt 333  Q
    |||| |||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||| ||||||||||||   ||||||||||    
T  54446354 taggtttaattaatgatttggtcccttaagttatttgttagttacatttttggtcctataagttattaacattacaatttggtcttttaagttagt 54446259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 240 - 329
Target Start/End: Original strand, 19860489 - 19860579
Alignment:
Q  240 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaagt 329  Q
    ||||||||||||||||| |||||  ||||||||||| ||||||||||||| || |||||||||||||||||||||||||||| | ||||||    
T  19860489 taggcttaattaatgatgtggtctattaagttatttattggttacattttagtcccataagttattaacgttacaatttggtcctttaagt 19860579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 240 - 317
Target Start/End: Original strand, 38758606 - 38758684
Alignment:
Q  240 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaattt 317  Q
    |||||||||||| |||| | |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  38758606 taggcttaattagtgatgttgtcccttaagttatttgttggttacattttagtcccataagttattaacgttacaattt 38758684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 234 - 291
Target Start/End: Original strand, 11422371 - 11422428
Alignment:
Q  234 atataataggcttaattaatgatttggtcccttaagttatttgttggttacattttgg 291  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11422371 atataattggcttaattaatgatttggtcccttaagttatttgttggttacattttgg 11422428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 238 - 305
Target Start/End: Complemental strand, 46685605 - 46685537
Alignment:
Q  238 aataggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttatta 305  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  46685605 aataggcttaattaatgatttggtcccttaaattatttattggttacattttggtcccataagttatta 46685537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 242 - 302
Target Start/End: Original strand, 18025880 - 18025941
Alignment:
Q  242 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagtta 302  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  18025880 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 18025941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 3171825 - 3171775
Alignment:
Q  239 ataggcttaattaatgatttggtcccttaagttatttgttggttacatttt 289  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3171825 ataggcttaattaatgatttggtcccttaagttatttgtcggttacatttt 3171775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 244 - 325
Target Start/End: Original strand, 54446022 - 54446104
Alignment:
Q  244 cttaattaatgatttggtcccttaagttatttgttggttacattttggtcc-ataagttattaacgttacaatttggtacctt 325  Q
    ||||||||||||| ||||| || ||||||||||||| |||||||||  ||| |||||||||||||||||||||||||| ||||    
T  54446022 cttaattaatgatgtggtctctaaagttatttgttgattacattttaatcctataagttattaacgttacaatttggtccctt 54446104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 241 - 317
Target Start/End: Original strand, 14812426 - 14812503
Alignment:
Q  241 aggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaattt 317  Q
    ||||||||| ||||||||| ||  ||||||||||| || ||||||||||||| |||||||||||||||||||||||||    
T  14812426 aggcttaatcaatgatttgatcatttaagttattttttagttacattttggtcccataagttattaacgttacaattt 14812503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 262 - 333
Target Start/End: Complemental strand, 21792433 - 21792360
Alignment:
Q  262 cccttaagttatttgttggttacattttggtcc-ataagttattaacgttacaatttggt-accttaagttagt 333  Q
    |||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||  ||||||||||||    
T  21792433 cccttaagttatttgttgtttacattttggtcctctaagttattaacgttacaatttggtctccttaagttagt 21792360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 253 - 320
Target Start/End: Original strand, 21792228 - 21792296
Alignment:
Q  253 tgatttggtcccttaagttatttgttggttacattttggtcc-ataagttattaacgttacaatttggt 320  Q
    |||| ||||||||||| ||||| |||||||||||||| |||| ||||||||||||||||||||||||||    
T  21792228 tgatgtggtcccttaatttattggttggttacattttagtcccataagttattaacgttacaatttggt 21792296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 265 - 331
Target Start/End: Complemental strand, 19860802 - 19860736
Alignment:
Q  265 ttaagttatttgttggttacattttggtccataagttattaacgttacaatttggtaccttaagtta 331  Q
    ||||||||||| |||||||||||||||||   ||||||||||| |||||||||||| | ||||||||    
T  19860802 ttaagttatttattggttacattttggtctcaaagttattaacattacaatttggtcctttaagtta 19860736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 266 - 317
Target Start/End: Complemental strand, 18026163 - 18026111
Alignment:
Q  266 taagttatttgttggttacattttggt-ccataagttattaacgttacaattt 317  Q
    |||||||||||||||||||||||| || |||||||||||||||||||| ||||    
T  18026163 taagttatttgttggttacattttagtcccataagttattaacgttaccattt 18026111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 234 - 294
Target Start/End: Original strand, 25629423 - 25629483
Alignment:
Q  234 atataataggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcc 294  Q
    |||||||||||||||||| | |||||||||||||| |||||| ||| |||| |||||||||    
T  25629423 atataataggcttaattactcatttggtcccttaacttattttttgattacgttttggtcc 25629483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 240 - 294
Target Start/End: Original strand, 30385179 - 30385233
Alignment:
Q  240 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcc 294  Q
    |||||||||||| | |||||||||||||| |||||| |||||| |||||||||||    
T  30385179 taggcttaattactcatttggtcccttaacttattttttggtttcattttggtcc 30385233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 241 - 294
Target Start/End: Original strand, 42592399 - 42592452
Alignment:
Q  241 aggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcc 294  Q
    ||||||||||| | |||||||||||||| |||||| |||||| |||||||||||    
T  42592399 aggcttaattactcatttggtcccttaacttattttttggtttcattttggtcc 42592452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 244 - 294
Target Start/End: Original strand, 18024567 - 18024617
Alignment:
Q  244 cttaattaatgatttggtcccttaagttatttgttggttacattttggtcc 294  Q
    |||||||| | |||||||||||||| |||||| |||||| |||||||||||    
T  18024567 cttaattactcatttggtcccttaacttattttttggtttcattttggtcc 18024617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 240 - 294
Target Start/End: Complemental strand, 18024977 - 18024923
Alignment:
Q  240 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcc 294  Q
    |||||||||||| | |||||||||||||| |||||| |||||| | |||||||||    
T  18024977 taggcttaattactaatttggtcccttaacttattttttggtttcgttttggtcc 18024923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 244 - 333
Target Start/End: Original strand, 19897 - 19987
Alignment:
Q  244 cttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttggtaccttaagttagt 333  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  19897 cttaattaatgatttggtcccttaagttatttgttggttacattttggtcgcataagttattaacgttacaatttggtcccttaagttagt 19987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 244 - 325
Target Start/End: Complemental strand, 20232 - 20151
Alignment:
Q  244 cttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtacctt 325  Q
    ||||||||||||| |||||| ||||||||||||||||||| |||||  | |||||| ||||||||||||||||||||| ||||    
T  20232 cttaattaatgatgtggtcc-ttaagttatttgttggttatattttaattccataatttattaacgttacaatttggtccctt 20151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 439 - 594
Target Start/End: Original strand, 1180942 - 1181103
Alignment:
Q  439 acaagtggtttcttgaattgtttccgaaattcccttttattgagagttttattttaaattattgtgacatgcctgaaaagattgatatttcaagtgttcg 538  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| |  |||||  ||||| | |||||| | |||||||||||||||||||||||    
T  1180942 acaagtggtttcttgaattgtttccgaaattcccttttcttgagagtttgaaattaaacaattgtaaaatgcctaagaagattgatatttcaagtgttcg 1181041  T
Q  539 acttaagaggttggagttttggcgtt------acttgaaggaggttaatattgattctccaa 594  Q
    ||||||||| |||||||||  || ||      ||||||||||| ||||||||||||||||||    
T  1181042 acttaagagattggagtttatgcattcctctaacttgaaggagcttaatattgattctccaa 1181103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 241 - 333
Target Start/End: Complemental strand, 5367751 - 5367659
Alignment:
Q  241 aggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaagttagt 333  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  5367751 aggcttaattaatgatttggtcc-ttaagttatttgttggttacattttggttccataagttattaacgttacaatttggtcccttaagttagt 5367659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 241 - 333
Target Start/End: Complemental strand, 3659288 - 3659196
Alignment:
Q  241 aggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaagttagt 333  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||    
T  3659288 aggcttaattaatgatttggtcccttaagttatttgttagttacattttggtcccataagttattaac-ttacaatttggtcccttaagttagt 3659196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 439 - 554
Target Start/End: Original strand, 1186319 - 1186434
Alignment:
Q  439 acaagtggtttcttgaattgtttccgaaattcccttttattgagagttttattttaaattattgtgacatgcctgaaaagattgatatttcaagtgttcg 538  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||| |  ||| |  ||||||| || ||||| | |||||||||||||||||||||    
T  1186319 acaagtggtttcttgaattgtttccgaaattcccctttcttgagagtttgaaattagaaaattgtgaaattcctgagaggattgatatttcaagtgttcg 1186418  T
Q  539 acttaagaggttggag 554  Q
    ||||||||||||||||    
T  1186419 acttaagaggttggag 1186434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 239 - 331
Target Start/End: Original strand, 8286785 - 8286878
Alignment:
Q  239 ataggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaagtta 331  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||| |||||||||||| ||| || ||||||||||    
T  8286785 ataggcttaattaatgatttagtcccttaagttatttgttggttacattttggtcccttaagtaattaacgttacattttagttccttaagtta 8286878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 240 - 331
Target Start/End: Complemental strand, 8287503 - 8287411
Alignment:
Q  240 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggtccataagttatt-aacgttacaatttggtaccttaagtta 331  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |  |||| ||||||||| |||||| ||||||||||    
T  8287503 taggcttaattaatgatttggtcccttaagttatttgttggttacattttagtcctttaactattcaacgttacattttggtcccttaagtta 8287411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 340 - 431
Target Start/End: Original strand, 1185907 - 1185998
Alignment:
Q  340 ttggatgggtttatcaagattgatccaataatcatgaattattcaatcaagtttttctcattgagggtattgtcactaaggcgagtactttt 431  Q
    ||||| |||||||| ||||||||||||||| ||| |||| ||||||| ||||||||||||||||||| ||||||||||||||  ||||||||    
T  1185907 ttggaggggtttataaagattgatccaatattcacgaatcattcaataaagtttttctcattgagggaattgtcactaaggcatgtactttt 1185998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 351 - 433
Target Start/End: Original strand, 1180553 - 1180635
Alignment:
Q  351 tatcaagattgatccaataatcatgaattattcaatcaagtttttctcattgagggtattgtcactaaggcgagtactttttg 433  Q
    |||||||||||||||| || ||||||||||||| |||||||||||||| ||||||| ||||||||||| ||| ||||||||||    
T  1180553 tatcaagattgatccagtattcatgaattattcgatcaagtttttctctttgagggaattgtcactaacgcgtgtactttttg 1180635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 240 - 318
Target Start/End: Original strand, 3658950 - 3659029
Alignment:
Q  240 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttg 318  Q
    |||||||||||| |||| |||||||||||||||||| ||||||||| ||| || |||||||||||||| |||||||||||    
T  3658950 taggcttaattactgatgtggtcccttaagttatttattggttacagtttagtcccataagttattaaagttacaatttg 3659029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 241 - 320
Target Start/End: Original strand, 28944244 - 28944324
Alignment:
Q  241 aggcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttggt 320  Q
    ||||||||||||| || || |||||||||| ||||||||||||||||||  || | ||||||||||| |||||||||||||    
T  28944244 aggcttaattaatcatctgctcccttaagtcatttgttggttacattttaatctcgtaagttattaatgttacaatttggt 28944324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 242 - 286
Target Start/End: Original strand, 5367407 - 5367451
Alignment:
Q  242 ggcttaattaatgatttggtcccttaagttatttgttggttacat 286  Q
    |||||||||| |||| |||||||||||||||||||||||||||||    
T  5367407 ggcttaattactgatatggtcccttaagttatttgttggttacat 5367451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 9899560 - 9899612
Alignment:
Q  242 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcc 294  Q
    |||||||||| | |||||||||||||| |||||| |||||| |||||||||||    
T  9899560 ggcttaattactcatttggtcccttaacttattttttggtttcattttggtcc 9899612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Complemental strand, 13119239 - 13119207
Alignment:
Q  242 ggcttaattaatgatttggtcccttaagttatt 274  Q
    |||||||||||||||||||||||||||||||||    
T  13119239 ggcttaattaatgatttggtcccttaagttatt 13119207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 588 - 619
Target Start/End: Complemental strand, 1186435 - 1186404
Alignment:
Q  588 tctccaacctcttaagtcgaacacttgaaata 619  Q
    ||||||||||||||||||||||||||||||||    
T  1186435 tctccaacctcttaagtcgaacacttgaaata 1186404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 244 - 275
Target Start/End: Original strand, 3720052 - 3720083
Alignment:
Q  244 cttaattaatgatttggtcccttaagttattt 275  Q
    ||||||||||||||||||||||||||||||||    
T  3720052 cttaattaatgatttggtcccttaagttattt 3720083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 240 - 294
Target Start/End: Complemental strand, 29836210 - 29836156
Alignment:
Q  240 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcc 294  Q
    |||||||||||| | | |||||||||||| |||||| |||||||| |||||||||    
T  29836210 taggcttaattattcagttggtcccttaacttattttttggttacgttttggtcc 29836156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 8938881 - 8938938
Alignment:
Q  237 taataggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcc 294  Q
    ||||||||||||||| |  ||||||||||||| |||||| |||||| | |||||||||    
T  8938881 taataggcttaattactcttttggtcccttaacttattttttggtttcgttttggtcc 8938938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 241 - 294
Target Start/End: Original strand, 19048243 - 19048296
Alignment:
Q  241 aggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcc 294  Q
    ||||||||||| |  ||||||||||||| |||||| |||||| |||||||||||    
T  19048243 aggcttaattacttttttggtcccttaacttattttttggtttcattttggtcc 19048296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 241 - 294
Target Start/End: Original strand, 30859919 - 30859972
Alignment:
Q  241 aggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcc 294  Q
    ||||||||||| | |||||||||||||| |||||| |||||| | |||||||||    
T  30859919 aggcttaattactcatttggtcccttaacttattttttggtttcgttttggtcc 30859972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 9e-35; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 231 - 333
Target Start/End: Complemental strand, 38695235 - 38695132
Alignment:
Q  231 aatatataataggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaagt 329  Q
    |||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||| ||||||||    
T  38695235 aatataaaaaaggcttaattaatgatttggtcccttaagttatttattggttacattttggtcccataaattattaacgttacaatttggtcccttaagt 38695136  T
Q  330 tagt 333  Q
    ||||    
T  38695135 tagt 38695132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 242 - 332
Target Start/End: Original strand, 18166633 - 18166724
Alignment:
Q  242 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttggtaccttaagttag 332  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||    
T  18166633 ggcttaattaatgatttggtcccttaaattatttgttggttacattttgatctcataagttattaacgttacaatttggtcccttaagttag 18166724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 233 - 327
Target Start/End: Original strand, 14159197 - 14159292
Alignment:
Q  233 tatataataggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaa 327  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||  |||||| ||||||    
T  14159197 tatataaaaggcttaattaatgatttggtcccttaagttatttgttggttacgttttggtcccataagttattaacgttacgttttggtcccttaa 14159292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 240 - 325
Target Start/End: Complemental strand, 42963106 - 42963020
Alignment:
Q  240 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttggtacctt 325  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||    
T  42963106 taggcttaattaatgatgtggtcccttaagttatttgttggttacattttagtctcataagttattaacgttacaatttggtgcctt 42963020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 240 - 332
Target Start/End: Complemental strand, 4410713 - 4410620
Alignment:
Q  240 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaagttag 332  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||| |||| |||||| |||||||||||    
T  4410713 taggcttaattaatgatttggtcccttaagttatttgttggttacaatttggtcccgtaagttattaacgctacattttggtcccttaagttag 4410620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 240 - 333
Target Start/End: Original strand, 42962766 - 42962860
Alignment:
Q  240 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttggtaccttaagttagt 333  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||||| || ||||||| | ||||||||||||||||| ||||||||||||    
T  42962766 taggcttaattaatgatttggtcccttaggttatttgttggttgcattttgatctcataagtgactaacgttacaatttggtcccttaagttagt 42962860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 239 - 327
Target Start/End: Complemental strand, 4734291 - 4734202
Alignment:
Q  239 ataggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcc-ataagttattaacgttacaatttggtaccttaa 327  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||  |||||| ||||||    
T  4734291 ataggcttaattaatgaattggtcccttaagttatttgttggttacattttgatcctataagttattaacgttacgttttggtcccttaa 4734202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 239 - 325
Target Start/End: Complemental strand, 14160495 - 14160408
Alignment:
Q  239 ataggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtacctt 325  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||  |||||| ||||    
T  14160495 ataggcttaattaatgatttggtccattaagttatttgttggttacgttttggtcccataagttattaacgttacgttttggtccctt 14160408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 242 - 327
Target Start/End: Original strand, 4733304 - 4733390
Alignment:
Q  242 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaa 327  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||| ||||  |||||| ||||||    
T  4733304 ggcttaattaatgatttgatcccttaaattatttgttggttacattttggtcccataagttattaacattacgttttggtcccttaa 4733390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 240 - 320
Target Start/End: Complemental strand, 18171418 - 18171337
Alignment:
Q  240 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggt 320  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||| || ||||||||||||||  ||||||||||||    
T  18171418 taggcttaattaatgatatggtcccttaaattatttgttggttacattttagtcccataagttattaaaattacaatttggt 18171337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 239 - 325
Target Start/End: Original strand, 38694885 - 38694972
Alignment:
Q  239 ataggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtacctt 325  Q
    |||||| ||||| ||||| |||||||||||||||||||||||||||||||| || |||||| ||||||||||||| ||||||| ||||    
T  38694885 ataggcctaattgatgatgtggtcccttaagttatttgttggttacattttagtcccataaattattaacgttaccatttggtccctt 38694972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 246 - 331
Target Start/End: Original strand, 4409164 - 4409250
Alignment:
Q  246 taattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttggtaccttaagtta 331  Q
    ||||||||||||||||| ||||| ||||||||| |||||| ||||||| |||||||||||||||||||  |||||| ||||||||||    
T  4409164 taattaatgatttggtctcttaaattatttgttagttacaatttggtctcataagttattaacgttacgttttggtcccttaagtta 4409250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 241 - 294
Target Start/End: Original strand, 39110071 - 39110124
Alignment:
Q  241 aggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcc 294  Q
    ||||||||||| | |||||||||||||| |||||| |||||| |||||||||||    
T  39110071 aggcttaattactcatttggtcccttaacttattttttggtttcattttggtcc 39110124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 240 - 294
Target Start/End: Original strand, 36099291 - 36099345
Alignment:
Q  240 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcc 294  Q
    |||||||||||| | |||||||||||||| |||||| |||||| | |||||||||    
T  36099291 taggcttaattactcatttggtcccttaacttattttttggtttcgttttggtcc 36099345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 240 - 294
Target Start/End: Original strand, 45001051 - 45001105
Alignment:
Q  240 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcc 294  Q
    |||||||||||| | |||||||||||||| |||||| |||||| | |||||||||    
T  45001051 taggcttaattactcatttggtcccttaacttattttttggtttcgttttggtcc 45001105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 240 - 333
Target Start/End: Complemental strand, 266958 - 266864
Alignment:
Q  240 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttggtaccttaagttagt 333  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||| ||||||||||||    
T  266958 taggtttaattaatgatttggtcctttaagttatttgttggttacattttggtcacataagttattaaccttataatttggtcccttaagttagt 266864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 240 - 325
Target Start/End: Original strand, 266619 - 266705
Alignment:
Q  240 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcc-ataagttattaacgttacaatttggtacctt 325  Q
    |||| ||||| | |||| |||| ||||||||||||||||||||||||||| |||| |||||||||||| |||| |||||||| ||||    
T  266619 tagggttaatcagtgatgtggttccttaagttatttgttggttacattttagtccgataagttattaatgttataatttggtccctt 266705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 8e-29; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 241 - 333
Target Start/End: Complemental strand, 4265313 - 4265220
Alignment:
Q  241 aggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaagttagt 333  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||| | |||||||||||||||||||||||||||| | ||||||||||    
T  4265313 aggcttaattaatgatttggtcccttaagttagttgtcggttacattttgatcccataagttattaacgttacaatttggtccattaagttagt 4265220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 242 - 318
Target Start/End: Original strand, 8905640 - 8905717
Alignment:
Q  242 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttg 318  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  8905640 ggcttaatcaatgatttggtctcttaagttatttgttggttacattttggtctcataagttattaatgttacaatttg 8905717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 240 - 327
Target Start/End: Complemental strand, 18471844 - 18471756
Alignment:
Q  240 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttggtaccttaa 327  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||| | |||||| ||||||    
T  18471844 taggcttagttaatgatttggtcccttaagttatctgttggttacattttggtctcataagttattaacattatattttggtcccttaa 18471756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 240 - 311
Target Start/End: Original strand, 18470137 - 18470209
Alignment:
Q  240 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgtta 311  Q
    ||||||||||||||||||| || |||||| |||||||||||||||||||||| | ||||||||||||| ||||    
T  18470137 taggcttaattaatgattttgtgccttaaattatttgttggttacattttggccacataagttattaatgtta 18470209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 241 - 320
Target Start/End: Original strand, 25749311 - 25749390
Alignment:
Q  241 aggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggt 320  Q
    ||||||||||||||||| |||||||| ||||||| ||||| || ||||| || ||||||||||||||||||||||||||||    
T  25749311 aggcttaattaatgattcggtccctttagttatt-gttggctatattttagttccataagttattaacgttacaatttggt 25749390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 240 - 311
Target Start/End: Complemental strand, 25749468 - 25749396
Alignment:
Q  240 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgtta 311  Q
    |||||||||||||| || || ||||||||||||||||||||||||| ||| ||| ||||||||||||||||||    
T  25749468 taggcttaattaattatgtgttcccttaagttatttgttggttacaatttagtctcataagttattaacgtta 25749396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 243 - 321
Target Start/End: Complemental strand, 8329115 - 8329037
Alignment:
Q  243 gcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttggta 321  Q
    ||||||||||||| ||||||  ||||||||||||||||||||||||||||| || ||||||||||||||||  |||||||    
T  8329115 gcttaattaatgaattggtct-ttaagttatttgttggttacattttggtctcaaaagttattaacgttacgttttggta 8329037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 243 - 320
Target Start/End: Original strand, 4264977 - 4265055
Alignment:
Q  243 gcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttggt 320  Q
    |||||||||||||| |||||  ||||||||||| ||||| ||||||| ||| |||||||||||||| ||||||||||||    
T  4264977 gcttaattaatgatgtggtcttttaagttattttttggtgacattttagtctcataagttattaacattacaatttggt 4265055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 244 - 312
Target Start/End: Original strand, 8328197 - 8328266
Alignment:
Q  244 cttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttac 312  Q
    |||||||||||| | ||||||||||||||||| || |||| ||||||||| || ||||||||||||||||    
T  8328197 cttaattaatgaatcggtcccttaagttatttattagttagattttggtctcacaagttattaacgttac 8328266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 245 - 321
Target Start/End: Complemental strand, 8342731 - 8342654
Alignment:
Q  245 ttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttggta 321  Q
    ||||||||||| ||||||| ||||||||||| ||||||||| ||||||| ||||||||| |||| ||||  |||||||    
T  8342731 ttaattaatgaattggtccattaagttattttttggttacactttggtctcataagttactaacattacgttttggta 8342654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 244 - 318
Target Start/End: Complemental strand, 8905973 - 8905898
Alignment:
Q  244 cttaattaatgatttggtcccttaagttatttgttggttacatttt-ggtccataagttattaacgttacaatttg 318  Q
    ||||||||||||| || ||||||||||||||||||||||| |||||   | ||||| ||||||| |||||||||||    
T  8905973 cttaattaatgatgtgatcccttaagttatttgttggttatattttactttcataaattattaaggttacaatttg 8905898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 437 - 484
Target Start/End: Complemental strand, 8552779 - 8552732
Alignment:
Q  437 agacaagtggtttcttgaattgtttccgaaattcccttttattgagag 484  Q
    |||||| |||||||||||||||||| |||||||||||||  |||||||    
T  8552779 agacaaatggtttcttgaattgttttcgaaattccctttccttgagag 8552732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 239 - 294
Target Start/End: Complemental strand, 19070013 - 19069958
Alignment:
Q  239 ataggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcc 294  Q
    ||||||||||||| |  ||||||||||||| |||||| |||||| |||||||||||    
T  19070013 ataggcttaattacttttttggtcccttaacttattttttggtttcattttggtcc 19069958  T

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Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 243 - 333
Target Start/End: Complemental strand, 18203391 - 18203300
Alignment:
Q  243 gcttaattaatgatttggtcccttaagttatttgttggttacattttgg-tccataagttattaacgttacaatttggtaccttaagttagt 333  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||| ||  |||||||||||    
T  18203391 gcttaattaatgatttggtcccttaagttatttattggttatattttggttccataagttattaacgttacaatttagtctcttaagttagt 18203300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 236 - 327
Target Start/End: Original strand, 10535994 - 10536086
Alignment:
Q  236 ataataggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaa 327  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||  |||||| ||||||    
T  10535994 ataataggcttaattaatgatttagtcccttaagttatttgttggttacattttggtcccataagatattaacattacgttttggtcccttaa 10536086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 244 - 325
Target Start/End: Complemental strand, 30906060 - 30905978
Alignment:
Q  244 cttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtacctt 325  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||    
T  30906060 cttaattaatgatgtggtctcttaagttatttgttggttacattttagtcccataagttattaacgttacaatttggtccctt 30905978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 240 - 312
Target Start/End: Complemental strand, 10536865 - 10536792
Alignment:
Q  240 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttac 312  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||| |||||    
T  10536865 taggcttaattaatgatttggtcccttaaattatttgttggttacattttgatcccataagttattaatgttac 10536792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 243 - 327
Target Start/End: Complemental strand, 32539520 - 32539435
Alignment:
Q  243 gcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttggtaccttaa 327  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||| ||||| ||| || ||||||    
T  32539520 gcttaattaatgatttggtcccttaagttatttgttggttacattttaatctcataagttattaacattacatttttgtcccttaa 32539435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 243 - 328
Target Start/End: Original strand, 30905397 - 30905483
Alignment:
Q  243 gcttaattaatgatttggtcccttaagttatttgttggttacatttt-ggtccataagttattaacgttacaatttggtaccttaag 328  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||   || |||| ||||||||||||||||||||| |||||||    
T  30905397 gcttaattaatgatttggtcccttaaattatttgttggttatattttaattctataacttattaacgttacaatttggtcccttaag 30905483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 236 - 318
Target Start/End: Original strand, 18202767 - 18202850
Alignment:
Q  236 ataataggcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttg 318  Q
    ||||| |||||||||||| || | |||  ||||||||||||||| ||||||||| ||| ||||||||||||| |||||||||||    
T  18202767 ataattggcttaattaataatgtagtctattaagttatttgttgattacattttcgtctcataagttattaatgttacaatttg 18202850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 9237814 - 9237762
Alignment:
Q  242 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcc 294  Q
    |||||||||| | |||||||||||||| |||||| |||||||| |||||||||    
T  9237814 ggcttaattattcatttggtcccttaacttattttttggttacgttttggtcc 9237762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 9237309 - 9237363
Alignment:
Q  239 ataggcttaattaatgatttggtcccttaagttatttgttggttacattttggtc 293  Q
    ||||||||||||| |  ||||||||||||| |||||| |||||| ||||||||||    
T  9237309 ataggcttaattactcttttggtcccttaatttattttttggtttcattttggtc 9237363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 266 - 307
Target Start/End: Original strand, 32538283 - 32538325
Alignment:
Q  266 taagttatttgttggttacattttggtc-cataagttattaac 307  Q
    ||||||||||||||||||||||||| || ||||||||||||||    
T  32538283 taagttatttgttggttacattttgatctcataagttattaac 32538325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 241 - 294
Target Start/End: Complemental strand, 10398757 - 10398704
Alignment:
Q  241 aggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcc 294  Q
    ||||||||||| | |||||||||||||| |||||| |||||| | |||||||||    
T  10398757 aggcttaattactcatttggtcccttaacttattttttggtttcgttttggtcc 10398704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 5e-27; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 242 - 327
Target Start/End: Original strand, 9114819 - 9114905
Alignment:
Q  242 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaa 327  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||| ||||||    
T  9114819 ggcttaattaatgattttgtcccttaagttatttgttggttacattttggtcccataagttattaacgttacgttttggtcccttaa 9114905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 242 - 312
Target Start/End: Original strand, 14903806 - 14903877
Alignment:
Q  242 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttac 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  14903806 ggcttaattaatgatttggtcccttaagttatttgttggttacattttgatcccataagttattaacgttac 14903877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 239 - 327
Target Start/End: Complemental strand, 14904670 - 14904581
Alignment:
Q  239 ataggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaa 327  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||  |||||| ||||||    
T  14904670 ataggcttaattaatgatttagtcccttaagttatttgttggttacattttggtcccataagatattaacattacgttttggtcccttaa 14904581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 240 - 327
Target Start/End: Complemental strand, 17691009 - 17690921
Alignment:
Q  240 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaa 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||  || |||| ||||||||||||||||||||  |||||| ||||||    
T  17691009 taggcttaattaatgatttggtcccttaagttatttgttggttatgttctggtcccataagttattaacgttacgttttggtcccttaa 17690921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 241 - 333
Target Start/End: Complemental strand, 37499509 - 37499416
Alignment:
Q  241 aggcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttggtaccttaagttagt 333  Q
    |||||||||||||||||||  | |||||||||||||||||||||||||||||| ||||||||||||| |||| ||||| ||  |||||||||||    
T  37499509 aggcttaattaatgatttgacctcttaagttatttgttggttacattttggtctcataagttattaatgttataatttcgtctcttaagttagt 37499416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 234 - 327
Target Start/End: Original strand, 17689728 - 17689821
Alignment:
Q  234 atataataggcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttggtaccttaa 327  Q
    |||| |||| |||||||||||||||||||||||||||||||||||| ||||  ||||||| |||||||||| ||||||||| ||| || ||||||    
T  17689728 atattatagacttaattaatgatttggtcccttaagttatttgttgattac-gtttggtctcataagttataaacgttacattttagtcccttaa 17689821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 238 - 318
Target Start/End: Complemental strand, 30335311 - 30335231
Alignment:
Q  238 aataggcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttg 318  Q
    ||||||||||||||||||| |||||| ||||||||||||||  ||||| ||| ||| |||||||||||||||||||||||||    
T  30335311 aataggcttaattaatgatgtggtcc-ttaagttatttgttacttacactttagtctcataagttattaacgttacaatttg 30335231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 37499178 - 37499223
Alignment:
Q  244 cttaattaatgatttggtcccttaagttatttgttggttacatttt 289  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  37499178 cttaattaatgatttggtcccttaagttatttgttgcttacatttt 37499223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 240 - 310
Target Start/End: Complemental strand, 9116134 - 9116064
Alignment:
Q  240 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgtt 310  Q
    |||||||||||||||  ||  ||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  9116134 taggcttaattaatgtatta-tcctttaagttatttgttggttacattttggtctcataagttattaacgtt 9116064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 243 - 331
Target Start/End: Original strand, 93633 - 93721
Alignment:
Q  243 gcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaagtta 331  Q
    ||||||||||||||||| ||| |||||||||||||| ||||||||||||| |||||| |||||||||||||||||| || ||||||||||    
T  93633 gcttaattaatgatttgatcc-ttaagttatttgttagttacattttggtcccataaattattaacgttacaatttagtcccttaagtta 93721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 265 - 318
Target Start/End: Complemental strand, 93944 - 93890
Alignment:
Q  265 ttaagttatttgttggttacattttggtcc-ataagttattaacgttacaatttg 318  Q
    |||| |||||||||||||||||||| |||| |||| |||||||||||||||||||    
T  93944 ttaatttatttgttggttacattttagtcccataaattattaacgttacaatttg 93890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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