View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20126_high_5 (Length: 350)
Name: NF20126_high_5
Description: NF20126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20126_high_5 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 194 - 350
Target Start/End: Original strand, 6942439 - 6942595
Alignment:
| Q |
194 |
aagaaaaacatttaagaggaatgtaacattttacattggtttccctaccaatgttaacatggcatgttacccataagtatgttagaacagcaaactggta |
293 |
Q |
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| T |
6942439 |
aagaaaaacatttaagaggaatgtaacagtttacattggtttccctaccaatgttaacatggcatgttacccataagtatgttagaacagcaaactggtt |
6942538 |
T |
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| Q |
294 |
cnnnnnnnnnnnnnttaaagaaacagtaaacgcaaataatgaacacatgatatttgg |
350 |
Q |
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| T |
6942539 |
caaaaatcaaaaaattaaagaaacagtaaacgcaaataatgaacacacgatgtttgg |
6942595 |
T |
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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 208
Target Start/End: Complemental strand, 6788323 - 6788244
Alignment:
| Q |
134 |
acaagatttgtaa-actgaatagagatgattacaa----caacataattagagaacaatagagcgaagaaaaacatttaa |
208 |
Q |
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| T |
6788323 |
acaagatttgtattactggatagagatgattacaatttacaacacaattagagaacaatagatcgaagaaaaagatttaa |
6788244 |
T |
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