View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20126_high_6 (Length: 338)
Name: NF20126_high_6
Description: NF20126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20126_high_6 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 13 - 338
Target Start/End: Original strand, 49257337 - 49257662
Alignment:
| Q |
13 |
cagatcaagaaattctgtcaagctaaatattttcaaggaaatatgttaaactagagaagatatcaatgttcatactcagagaactagcatcttaggccat |
112 |
Q |
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| T |
49257337 |
cagatcaagaaattctgtcaagctaaatattttcaaggaaatatgttaaactagagaagatatcaatgttcatactcagagaactagcatcttaggccat |
49257436 |
T |
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| Q |
113 |
gctatcttattaagattctgcaagagttttgaacatataccattcattaaaatatactcatttcttgagtgtctatgattgcaggcaattaaggcacggg |
212 |
Q |
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| T |
49257437 |
gctatcttattaagattctgcaagagttttgaacatataccattcattaaaatatactcatttcttgagtgtctatgattgcaggcaattaaggcacggg |
49257536 |
T |
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| Q |
213 |
aaaggatatttcaagaaggttttgcagtagaaaggatagattagtttgagcaaataaagaagattcctcagagttgccaacttgattaattaaaaagatc |
312 |
Q |
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| T |
49257537 |
aaaggatatttcaagaaagttttgcagtacaaaggatagattagtttgagcaaataaagaagattcctcagagttgccaacttgattaattaaaaagatc |
49257636 |
T |
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| Q |
313 |
atatctcatatactgtatggtccaag |
338 |
Q |
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| T |
49257637 |
atatctcatatactgtatggtccaag |
49257662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 6 - 227
Target Start/End: Original strand, 49270311 - 49270532
Alignment:
| Q |
6 |
agcaccacagatcaagaaattctgtcaagctaaatattttcaaggaaatatgttaaactagagaagatatcaatgttcatactcaga--gaactagcatc |
103 |
Q |
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| T |
49270311 |
agcatcacagatcaagaaatcctgtcaagctaaatattttcacattattatgttaaacttgagaagataattatgttcatactcaaacagaactaacatc |
49270410 |
T |
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| Q |
104 |
ttaggccatgctatcttattaagattctgcaagagttttgaacatataccattcattaaaatatactcatttcttgagtgtctatgattgcaggcaatta |
203 |
Q |
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| T |
49270411 |
ttaggccttgctatcttattatgattctgtaacagttttgaacatgtactgtttattgaaatataataatttctggaatgtc--tgattgcaggcaatca |
49270508 |
T |
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| Q |
204 |
aggcacgggaaaggatatttcaag |
227 |
Q |
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| T |
49270509 |
aggcacgggaaaggatatttcaag |
49270532 |
T |
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