View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20126_high_8 (Length: 311)
Name: NF20126_high_8
Description: NF20126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20126_high_8 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 182 - 311
Target Start/End: Original strand, 26286516 - 26286645
Alignment:
| Q |
182 |
cttaacatggtttgaaggtagtcaagttttttccaattaagctttactcacagcccgaacaaacattccaaggtgaaaatttgaaagccacctgtagaaa |
281 |
Q |
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| T |
26286516 |
cttaacatggtttgaaggtagtcaagttttttccaattaagctttactcacagcccgaacaaacattccaaggtgaaaatttgaaagccacctatagaaa |
26286615 |
T |
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| Q |
282 |
aataaaagtaaatcttaagtatataaccaa |
311 |
Q |
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| T |
26286616 |
aataaaagtaaatcataagtatataaccaa |
26286645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 26286337 - 26286483
Alignment:
| Q |
1 |
aaaggtgtgtgttcaaaagtgtgactttagcaccactccttataatcacataaactaaataaggcaaacccatgaaggggtaatgaatcttccccaaccn |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
26286337 |
aaaggtgtgtgttcaaaagtgtgactttagcatcactccttataatcaaataaactaaataaggcaaacccatgaaggggtagtgaatcttcgccaacc- |
26286435 |
T |
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| Q |
101 |
nnnnnnnagcaggaatctctccccaccttgtttaatgtatgattccatg |
149 |
Q |
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| T |
26286436 |
-ttttttagcaggaatctctccccaccttgtttaatgtatgattccatg |
26286483 |
T |
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