View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20126_low_1 (Length: 328)
Name: NF20126_low_1
Description: NF20126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20126_low_1 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0164 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 46 - 328
Target Start/End: Complemental strand, 18808210 - 18807929
Alignment:
| Q |
46 |
tggcttcaaatcaatcacaaaaacaacttaaagtcaaacttacattaaggaagaaaaggtttgaccacaattccatgcctatttgcagtttccttaattt |
145 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
18808210 |
tggcttcaaatcaatcacaaaaataacttaaagtcaaacttacattaaggaagaaaaggtttgaccacaattccatgtctatttgcagtttccttaattt |
18808111 |
T |
|
| Q |
146 |
aattatagtagaagtaaagaatcccattgttagcaatttaaaggaattgaattaacaaataaaaattggtttgagtctccctttacttagatgaatttta |
245 |
Q |
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|||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
18808110 |
aattctagtagaagtaaagaatctcattgtcagcaatttaaaggaattgaattaacaaataaaaattggtttgagtctcccttttcttagataaatttta |
18808011 |
T |
|
| Q |
246 |
ctccaattttatgacagnnnnnnntaaagttcactctccgtggaagtaaatccaccctagatgttgtaaaccacttcttcctc |
328 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
18808010 |
ctccaattttatgacag-aaaaaataaagttcactctccgtggaagtaaatccatcctagatgttgtaaaccacttcttcctc |
18807929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 54 - 328
Target Start/End: Complemental strand, 7677 - 7404
Alignment:
| Q |
54 |
aatcaatcacaaaaacaacttaaagtcaaacttacattaaggaagaaaaggtttgaccacaattccatgcctatttgcagtttccttaatttaattatag |
153 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7677 |
aatcaatcacaaaaacaacttaaagtcaaacttacattaacgaagaaaaggtttgaccacaattccatgcctatttgcagtttccttaatttaattctag |
7578 |
T |
|
| Q |
154 |
tagaagtaaagaatcccattgttagcaatttaaaggaattgaattaacaaataaaaattggtttgagtctccctttacttagatgaattttactccaatt |
253 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
7577 |
tagaagtaaagaatcccattgttagaaatttaaaggaattgaattaacaaataaaaattggtttgagtctcccttttcttagatgaattttactccaatt |
7478 |
T |
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| Q |
254 |
ttatgacagnnnnnnntaaagttcactctccgtggaagtaaatccaccctagatgttgtaaaccacttcttcctc |
328 |
Q |
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||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
7477 |
ttatgacag-aaaaaataaagttcactctccctggaagtaaatccaccatagatgttgtaaaccgcttcttcctc |
7404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 54 - 328
Target Start/End: Complemental strand, 15558 - 15285
Alignment:
| Q |
54 |
aatcaatcacaaaaacaacttaaagtcaaacttacattaaggaagaaaaggtttgaccacaattccatgcctatttgcagtttccttaatttaattatag |
153 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
15558 |
aatcaatcacaaaaacaacttaaagtcaaacttacattaacgaagaaaaggtttgaccacaattccatgcctatttgcagtttccttaatttaattctag |
15459 |
T |
|
| Q |
154 |
tagaagtaaagaatcccattgttagcaatttaaaggaattgaattaacaaataaaaattggtttgagtctccctttacttagatgaattttactccaatt |
253 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
15458 |
tagaagtaaagaatcccattgttagaaatttaaaggaattgaattaacaaataaaaattggtttgagtctcccttttcttagatgaattttactccaatt |
15359 |
T |
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| Q |
254 |
ttatgacagnnnnnnntaaagttcactctccgtggaagtaaatccaccctagatgttgtaaaccacttcttcctc |
328 |
Q |
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||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
15358 |
ttatgacag-aaaaaataaagttcactctccctggaagtaaatccaccatagatgttgtaaaccgcttcttcctc |
15285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 46 - 328
Target Start/End: Complemental strand, 19832704 - 19832423
Alignment:
| Q |
46 |
tggcttcaaatcaatcacaaaaacaacttaaagtcaaacttacattaaggaagaaaaggtttgaccacaattccatgcctatttgcagtttccttaattt |
145 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
19832704 |
tggcttcaaatcaatcacaaaaacaacttaaagtcaaacttacattaaggaagaaaaggtttgaccacaattctatgcctatttgcggtttccttaattt |
19832605 |
T |
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| Q |
146 |
aattatagtagaagtaaagaatcccattgttagcaatttaaaggaattgaattaacaaataaaaattggtttgagtctccctttacttagatgaatttta |
245 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
19832604 |
aattctagtagaagtaaagaatctcattgttagcaatttaaaggaattgaattaacaaataaaaattggtttgagtctcccttttcttagatgaatttta |
19832505 |
T |
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| Q |
246 |
ctccaattttatgacagnnnnnnntaaagttcactctccgtggaagtaaatccaccctagatgttgtaaaccacttcttcctc |
328 |
Q |
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||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
19832504 |
ctccaattttatgacag-aaaaaataaagttcactctccctggaagtaaatccaccctagatgttgtaaattgcttcttcctc |
19832423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 54 - 328
Target Start/End: Complemental strand, 24071098 - 24070825
Alignment:
| Q |
54 |
aatcaatcacaaaaacaacttaaagtcaaacttacattaaggaagaaaaggtttgaccacaattccatgcctatttgcagtttccttaatttaattatag |
153 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
24071098 |
aatcaatcacaaaaacaacttaaagtcaaacttacattaaggaagaaaaggtttgaccacaattccatgcctatttgcagtttccttaatttaattctag |
24070999 |
T |
|
| Q |
154 |
tagaagtaaagaatcccattgttagcaatttaaaggaattgaattaacaaataaaaattggtttgagtctccctttacttagatgaattttactccaatt |
253 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
24070998 |
tagaagtaaagaatcccattgttagaaatttaaaggaattgaattaacaaataaaaattggtttgagtctctcttttcttagatgaattttactccaatt |
24070899 |
T |
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| Q |
254 |
ttatgacagnnnnnnntaaagttcactctccgtggaagtaaatccaccctagatgttgtaaaccacttcttcctc |
328 |
Q |
| |
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||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
24070898 |
ttatgacag-aaaaaataaagttcactctccctagaagtaaatccaccctagatgttgtaaaccgcttcttcctc |
24070825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 179 - 328
Target Start/End: Original strand, 12319603 - 12319751
Alignment:
| Q |
179 |
caatttaaaggaattgaattaacaaataaaaattggtttgagtctccctttacttagatgaattttactccaattttatgacagnnnnnnntaaagttca |
278 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||| |
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| T |
12319603 |
caatttaaaggaattgaattaacgaataaaaattggtttgagtctccctttttttagatgaattttacttcaattttatgacag-aaaaaataaagttca |
12319701 |
T |
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| Q |
279 |
ctctccgtggaagtaaatccaccctagatgttgtaaaccacttcttcctc |
328 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||| |||||||||| |
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| T |
12319702 |
ctctccctggaagtaaatccaccctagatgttgtaaactgcttcttcctc |
12319751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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