View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20127_high_10 (Length: 351)
Name: NF20127_high_10
Description: NF20127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20127_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 16 - 321
Target Start/End: Complemental strand, 33159363 - 33159060
Alignment:
| Q |
16 |
atcaactcaatggaagtgtttgtctgcttaatagtggcatcatttaccagggcaccaaaatactttgtgaattgttgaatccattccttatctttacctc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33159363 |
atcaactcaatggaagtgtttgtctgcttaatagtggcatcatttaccagggcaccaaaatactttgtgaattgttgaatccattccttatctttacctc |
33159264 |
T |
|
| Q |
116 |
cacaaatgatgacaatgtcatcctccctcttcatttttcaaaggaaatttattagtcacgnnnnnnnnnnnnctttctcaatttaaacttgtcaacaatg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
33159263 |
cacaaatgatgacaatgtcatcctccctcttcatttttcaaaggaaatttattagtcacg--ttttttttttctttctcaatttaaacttgtcaacaata |
33159166 |
T |
|
| Q |
216 |
aagagaatggacaatatattaaacttctagaaataatatgcactggatatgtaaaaaagctttgtcacaaacataattatgtttcacaatataggtaaat |
315 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33159165 |
aagagaatggacaatatattaaacttctagaaataatatgcactggatatgtaaaaaagctttgtcacaaacataattatgtttcacaatataggtaaat |
33159066 |
T |
|
| Q |
316 |
attact |
321 |
Q |
| |
|
|||||| |
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|
| T |
33159065 |
attact |
33159060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 16 - 321
Target Start/End: Complemental strand, 33182207 - 33181903
Alignment:
| Q |
16 |
atcaactcaatggaagtgtttgtctgcttaatagtggcatcatttaccagggcaccaaaatactttgtgaattgttgaatccattccttatctttacctc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33182207 |
atcaactcaatggaagtgtttgtctgcttaatagtggcatcatttaccagggcaccaaaatactttgtgaattgttgaatccattccttatctttacctc |
33182108 |
T |
|
| Q |
116 |
cacaaatgatgacaatgtcatcctccctcttcatttttcaaaggaaatttattagtcacgnnnnnnnnnnnnctttctcaatttaaacttgtcaacaatg |
215 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
33182107 |
cacaaatgatgacaatgtcatcctccctcttcatttttcaaaggaaatttattagtcacg-tttttttttttctttctcaatttaaacttgtcaacaata |
33182009 |
T |
|
| Q |
216 |
aagagaatggacaatatattaaacttctagaaataatatgcactggatatgtaaaaaagctttgtcacaaacataattatgtttcacaatataggtaaat |
315 |
Q |
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|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33182008 |
aagagaatggacagtatattaaacttctagaaataatatgcactggatatgtaaaaaagctttgtcacaaacataattatgtttcacaatataggtaaat |
33181909 |
T |
|
| Q |
316 |
attact |
321 |
Q |
| |
|
|||||| |
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|
| T |
33181908 |
attact |
33181903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 33140737 - 33140630
Alignment:
| Q |
22 |
tcaatggaagtgtttgtctgcttaatagtggcatcatttaccagggcaccaaaatactttgtgaattgttgaatccattccttatctttacctccacaaa |
121 |
Q |
| |
|
||||| ||||| || ||||||||||||| |||||||||| | || |||||| |||||| ||||| |||||||||||||||||||||||||||||| ||| |
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|
| T |
33140737 |
tcaattgaagtcttcgtctgcttaatagcggcatcatttgctagagcaccagcatacttagtgaactgttgaatccattccttatctttacctccataaa |
33140638 |
T |
|
| Q |
122 |
tgatgaca |
129 |
Q |
| |
|
|||||||| |
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|
| T |
33140637 |
tgatgaca |
33140630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 33287371 - 33287514
Alignment:
| Q |
18 |
caactcaatggaagtgtttgtctgcttaatagtggcatcatttaccagggcaccaaaatactttgtgaattgttgaatccattccttatctttacctcca |
117 |
Q |
| |
|
||||||||| ||||| |||| |||||||||| | | ||||||| | |||||| | | |||| ||||||| ||| |||||| ||||||||||||||||| |
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| T |
33287371 |
caactcaattgaagtctttgcctgcttaatatttgtatcatttgctagggcagtagcaaacttggtgaattcttggatccatgccttatctttacctcca |
33287470 |
T |
|
| Q |
118 |
caaatgatgacaatgtcatcctccctcttcatttttcaaaggaa |
161 |
Q |
| |
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||||||| |||| | |||||| |||||||||||||||||| |
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|
| T |
33287471 |
taaatgataacaaacttctcctcctccttcatttttcaaaggaa |
33287514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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