View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20127_high_13 (Length: 295)
Name: NF20127_high_13
Description: NF20127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20127_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 17 - 285
Target Start/End: Original strand, 52769627 - 52769895
Alignment:
| Q |
17 |
atataattcataagatacgtaccagtgtcgtagccaaagagtaatccaccaatgctagctacagaagtgagacacaaaatgtaagggttcttaaacacag |
116 |
Q |
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| T |
52769627 |
atataattcataagatacgtaccagtgtcgtagccaaagagtaatccaccaatgctagctacagaagtgagacacaaaatgtaagggttcttaaacacag |
52769726 |
T |
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| Q |
117 |
agactttcctttcagggtgtgtatccaaatacccagagcttcctggaattcgaattgatgttgttatcgtcatctcatcgtaacaaagattaatggattg |
216 |
Q |
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||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
52769727 |
agacttttctttcagggtgtatatccaaatacccagagcttcctggaattcgaattgatgttgttaccgtcatctcatcgtaacaaagattaatggattg |
52769826 |
T |
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| Q |
217 |
gatgattagttgagttaagtcccaatagatagccaatacaatattacaatacaagacaacgtgcttctt |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
52769827 |
gatgattagttgagttaagtcccaatagatagccaatacaatattacaatacaagacaacatgcttctt |
52769895 |
T |
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