View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20127_high_14 (Length: 280)
Name: NF20127_high_14
Description: NF20127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20127_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 10 - 261
Target Start/End: Complemental strand, 45497575 - 45497323
Alignment:
| Q |
10 |
agcagcacagacactctaatgataccgtacttaacactctttagaatagctataaaactcataattgagaaacaaagtttcttcctcaatttaaccacgt |
109 |
Q |
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| T |
45497575 |
agcagctcaaacactctaatgataccgtacttaacactctttagaatagctatgaaactcaaaattgagaaacaaagtttcttcctcaatttaaccacgt |
45497476 |
T |
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| Q |
110 |
gaaagaacgaaagaaaaagggaatcattattaagaactaaacacctataccttggctaactttgaatttccacaacaaaagataacattcctctaagaat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45497475 |
gaaagaacgaaagaaaaagggaatcattattaagaactaaacacctataccttggctaactttgaatttccacaacaaaagataacattcctctaagaat |
45497376 |
T |
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| Q |
210 |
ctttgttcaatttgaaagcaataaaggcactgcttgt-aattcagttaccatt |
261 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
45497375 |
ctttgttcaatttgaaagcaataaaggcactgcttgtaaattcagttaccatt |
45497323 |
T |
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