View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20127_high_9 (Length: 358)
Name: NF20127_high_9
Description: NF20127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20127_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 17 - 339
Target Start/End: Complemental strand, 18583700 - 18583375
Alignment:
| Q |
17 |
cataggggccaatacgaagcacagcaaaaagtccttcatcttgaatagttttgagaaatctaatgagatcgttattgccactaaaatcatactcacgacg |
116 |
Q |
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| T |
18583700 |
cataggggccaatacgaagcacagcaaaaagtccttcatcttgaatagttttgagaaatctaatgagatcgttattgccactaaaatcatactcacgacg |
18583601 |
T |
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| Q |
117 |
aattggttcatgtgcattccaaaaaacatatgtttcaattgcatccaatccaccttcttttgctctcttaatcaaatcaggccacatctaatataaaaca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
18583600 |
aattggttcatgtgcattccaaaaaacatatgtttcaattgcatccaatccaccttcttttgctttcttaatcaaatcaggccacatctaatataaaaca |
18583501 |
T |
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| Q |
217 |
aataaaatacacatttagcatataat----taatggagaaacatgtatttaggtcnnnnnnnnnnnnntaatattaattacttacttgaggtgtgcttct |
312 |
Q |
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|||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
18583500 |
aataaaatacacatttagcatataattaattaatggagtaacatgtatttaggtc-aaaaagaaaaaataatattaattacttacttgaggtgtgcttct |
18583402 |
T |
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| Q |
313 |
aggataatggattgatccagaaataag |
339 |
Q |
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|||||| |||||||||||||||||||| |
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| T |
18583401 |
aggatagtggattgatccagaaataag |
18583375 |
T |
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