View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20127_low_1 (Length: 598)
Name: NF20127_low_1
Description: NF20127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20127_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 12 - 360
Target Start/End: Complemental strand, 3454869 - 3454520
Alignment:
| Q |
12 |
agagaggtagtaaggcatgtactccagacagctgcagcgccgttgcagaaaatgttaacattggaaggaaatgtagcagatgatatacctattgaggtat |
111 |
Q |
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| T |
3454869 |
agagaggtagtaaggcatgtactccagacagctgcagcaccattgcagaaaatgctaacactggaaggaaatgtagcagatgatatacctattgaggtat |
3454770 |
T |
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| Q |
112 |
gcaacacttctatacttggttatcagataaatgccaagtaatttacacttaa-aattctttcatgcataaaactgcaggtcaccggagatgttttaagga |
210 |
Q |
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| T |
3454769 |
gcaacacttgtatacttagttatcagataaatgccaagaaatttacacttaacaattctttcatgcataaaaatgcaggtcactggagatgttttaagga |
3454670 |
T |
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| Q |
211 |
ttcggcaaattctcacaaatttagtcaggtacgataatatatttgattgctaatctcttgagtttgtataaccaagtgaggttgctagtattttcaccct |
310 |
Q |
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| T |
3454669 |
ttcggcagattctcacaaatttagtcaggtactacaatatatttgattgctaatctcttgattttgtataaccaagcgagcttgttagtattttatctgt |
3454570 |
T |
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| Q |
311 |
tgtatgcggttatttatctgtttgctttagaatcggattggttgttctaa |
360 |
Q |
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| T |
3454569 |
tgtatacgtttatttctctgttttcgttagaattggattcgttgttctaa |
3454520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 394 - 583
Target Start/End: Complemental strand, 3454524 - 3454336
Alignment:
| Q |
394 |
tctaaacattgtagttctgattttcgtgttattttgcagcaatgctgtcaaattcacacatcaaggcaaagttggtataaacctttatgtggttccggag |
493 |
Q |
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| T |
3454524 |
tctaaatattgtagttctgattatc-tgttattttgcagcaatgctgtcaagtttacacatcaaggcaaagttggtataaacctttatgttgttccagaa |
3454426 |
T |
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| Q |
494 |
ccagcatttgccaaagaagaagaatatcaccaaaaggtcacagaagaccagtcaactatttcagcaaatggattgaaggaagataaacat |
583 |
Q |
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| T |
3454425 |
ccagcatttgccaaagaagaagaatctcaccaaaaggtcacagaagaccagtcaactatttcagcaaatggattgaaggaagataaacat |
3454336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 109
Target Start/End: Original strand, 48695754 - 48695851
Alignment:
| Q |
12 |
agagaggtagtaaggcatgtactccagacagctgcagcgccgttgcagaaaatgttaacattggaaggaaatgtagcagatgatatacctattgaggt |
109 |
Q |
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| T |
48695754 |
agagaggtagtaaagcatgtgcttcagacagccgcagcatcattgcagaaaatattaaccatagaaggacatgtagcagatgatgtacctatagaggt |
48695851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 48695984 - 48696042
Alignment:
| Q |
184 |
tgcaggtcaccggagatgttttaaggattcggcaaattctcacaaatttagtcaggtac |
242 |
Q |
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| T |
48695984 |
tgcaggtcattggtgatgttttaaggattcggcaaattctcacaaatttaaccaggtac |
48696042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 44196104 - 44196157
Alignment:
| Q |
147 |
aagtaatttacacttaaaattctttcatgcataaaactgcaggtcaccggagat |
200 |
Q |
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| T |
44196104 |
aagtaatttacactcacaattctttgatgcataaaactgcaggtcactggagat |
44196157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 50806773 - 50806720
Alignment:
| Q |
147 |
aagtaatttacacttaaaattctttcatgcataaaactgcaggtcaccggagat |
200 |
Q |
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| T |
50806773 |
aagtaatttacactcacaattctttgatgcataaaacagcaggtcactggagat |
50806720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 50869104 - 50869157
Alignment:
| Q |
147 |
aagtaatttacacttaaaattctttcatgcataaaactgcaggtcaccggagat |
200 |
Q |
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| T |
50869104 |
aagtaatttacactcacaattctttgatgcataaaacagcaggtcactggagat |
50869157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 483
Target Start/End: Original strand, 48696193 - 48696252
Alignment:
| Q |
424 |
attttgcagcaatgctgtcaaattcacacatcaaggcaaagttggtataaacctttatgt |
483 |
Q |
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| T |
48696193 |
attttgcagcaatgccatcaaatttacaaatgaaggcaaagtagggataaacctttatgt |
48696252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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