View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20127_low_12 (Length: 342)
Name: NF20127_low_12
Description: NF20127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20127_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 170; Significance: 3e-91; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 15 - 251
Target Start/End: Complemental strand, 7501119 - 7500871
Alignment:
| Q |
15 |
gatggaagttagataagatattacctatattttagatgaagctcttt-gttactcaacatagagatatgattgcaggtgttggaatttcaaaacatttta |
113 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7501119 |
gatggaagttagatgagatattacctatattttagatgaagctcttttgttactcaacatagagatatgattgcaggtgttggaatttcaaaacatttta |
7501020 |
T |
|
| Q |
114 |
gtaaaccctgtttcgatttcaatccca----------annnnnnnncaaagaaccctttgaatagtttttacattaactgtt-actttgctatgtcaaat |
202 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7501019 |
gtaaaccctgtttcgatttcaatcccaatttttttttattttttttcaaagaaccctttgaatagtttttacattaactgttaactttgctatgtcaaat |
7500920 |
T |
|
| Q |
203 |
tgctgatatgaaaatatattatcttatcagcattgtcattcatgtgtgt |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7500919 |
tgctgatatgaaaatatattatcttatcagcattgtcattcatgtgtgt |
7500871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 247 - 323
Target Start/End: Complemental strand, 7500764 - 7500688
Alignment:
| Q |
247 |
tgtgtcaaacactaggtttatgatgaacacagtattgttaatcgtcatttacactatgttacctttttataacacca |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7500764 |
tgtgtcaaacactaggtttatgatgaacacagtattgttaatcgtcatttacactatgttacctttttataacacca |
7500688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 246 - 318
Target Start/End: Complemental strand, 15172027 - 15171955
Alignment:
| Q |
246 |
gtgtgtcaaacactaggtttatgatgaacacagtattgttaatcgtcatttacactatgttacctttttataa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
15172027 |
gtgtgtcaaacactaggtttatgatgaacacagtattgttaatcatcaattacactatgttacctttttataa |
15171955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University