View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20127_low_13 (Length: 324)
Name: NF20127_low_13
Description: NF20127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20127_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 58 - 308
Target Start/End: Original strand, 35066401 - 35066652
Alignment:
| Q |
58 |
accaatacatgcaaaattgcaattttgttccgagtaaagtgtatactcatgattcaaatcactacaagaaaaactgttatttaccggagacatatgtgag |
157 |
Q |
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| T |
35066401 |
accaatacatgcaaaattgcaattttgttccgaataaagcgtatactcatgattcaaatcactacaagaaaaactgttatttgccggagacatatgtgag |
35066500 |
T |
|
| Q |
158 |
gg-catcaacccctaggaaatttgtcaaggggtagagacacgggtacgcctgagaaaatatattttaagagatttgggtatgacaagggttaagacgagg |
256 |
Q |
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|| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35066501 |
gggcatcaatccctaggaaatttgtcagggggtagagacacgggtacgcctgagaaaatatattttaagagatttgggtatgacaagggttaagacgagg |
35066600 |
T |
|
| Q |
257 |
gttaacccttggaaaacatatttgaacctctaagaaatttgaggcagaaaac |
308 |
Q |
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| T |
35066601 |
gttaacccttggaaaacatacttgaacctctgagaaatttgaggcagaaaac |
35066652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 35066344 - 35066376
Alignment:
| Q |
1 |
aaaaatacataaaaaggattgcatttcaaagac |
33 |
Q |
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| T |
35066344 |
aaaaatacataaaaaggattgcatttcaaagac |
35066376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 116
Target Start/End: Complemental strand, 36291994 - 36291937
Alignment:
| Q |
58 |
accaatacatgcaaaattgcaattttgttccgagtaaagtgtatactcatgattcaaat |
116 |
Q |
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|
| T |
36291994 |
accaaaacatgcaaaattgaaattttgttccgcgt-aagtgtatactcataagtcaaat |
36291937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 94
Target Start/End: Complemental strand, 1050692 - 1050656
Alignment:
| Q |
58 |
accaatacatgcaaaattgcaattttgttccgagtaa |
94 |
Q |
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||||| |||||||||||||||||||||||| |||||| |
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|
| T |
1050692 |
accaaaacatgcaaaattgcaattttgttcggagtaa |
1050656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 43069480 - 43069433
Alignment:
| Q |
58 |
accaatacatgcaaaattgcaattttgttccgagtaaagtgtatactca |
106 |
Q |
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||||| ||||||||||||| |||||||||||| || ||||||||||||| |
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| T |
43069480 |
accaaaacatgcaaaattgaaattttgttccgcgt-aagtgtatactca |
43069433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 29743908 - 29743861
Alignment:
| Q |
58 |
accaatacatgcaaaattgcaattttgttccgagtaaagtgtatactca |
106 |
Q |
| |
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||||| ||||||||||||| |||||||||||| || ||||||||||||| |
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|
| T |
29743908 |
accaaaacatgcaaaattgaaattttgttccgcgt-aagtgtatactca |
29743861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 10352427 - 10352474
Alignment:
| Q |
58 |
accaatacatgcaaaattgcaattttgttccgagtaaagtgtatactca |
106 |
Q |
| |
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||||| ||||||||||||| |||||||||||| || ||||||||||||| |
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|
| T |
10352427 |
accaaaacatgcaaaattgaaattttgttccgtgt-aagtgtatactca |
10352474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 19565044 - 19565091
Alignment:
| Q |
58 |
accaatacatgcaaaattgcaattttgttccgagtaaagtgtatactca |
106 |
Q |
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||||| ||||||||||||| |||||||||||| || ||||||||||||| |
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| T |
19565044 |
accaaaacatgcaaaattgaaattttgttccgcgt-aagtgtatactca |
19565091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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