View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20127_low_14 (Length: 308)
Name: NF20127_low_14
Description: NF20127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20127_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 292
Target Start/End: Complemental strand, 12043995 - 12043721
Alignment:
| Q |
18 |
attcaaaacatatcaatcccaaacgtgtgacagtagcattgctcatattaaaatgaatgattgagattttgaatttatcattagctaaacttggagtgtg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
12043995 |
attcaaaacatatcaatcccaaacgtgtgacagtagcattgctcatataaaaatgaatgattgagattttgaatttattattagctaaacttggagtgtg |
12043896 |
T |
|
| Q |
118 |
aaccattcgatctctagagtgaatctggtcctactatttctagtgttttttgttttgtttgatatatatcatttcatttcttctaattattgatcgacat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12043895 |
aaccattcgatctctagagtgaatctggtcctactatttctagtgttttttgttttgtttgatatatatcatttcatttcttctaattattgatcgacat |
12043796 |
T |
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| Q |
218 |
gtaactctgttttttcgataattgatcaccatgcaactctgtcctaagtccccaatagatatcacatcaaaggta |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
12043795 |
gtaactctgttttttcgataattgatcaccatgcaactctgtcctaagtccctaatagatatcacatcaaaggta |
12043721 |
T |
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