View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20127_low_18 (Length: 272)
Name: NF20127_low_18
Description: NF20127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20127_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 37745703 - 37745436
Alignment:
| Q |
1 |
ccagttccaccaagatttccagggatagtggggaaagtattaccactggtacagccaccagggaaggtgcaaaaccttaacccatcaggaccatagttta |
100 |
Q |
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| T |
37745703 |
ccagttccaccaagatttccagggatagtgggaaaagtattaccactggtacagccaccagggaaggtgcaaaaccttaacccatcaggaccatagttta |
37745604 |
T |
|
| Q |
101 |
cacctgcagcaaagttaccagggctactgggaagtatcccatttcctcctcccatattgaaagtttcaggatgtttcacactctccttcagtaaccttcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37745603 |
cacctgcagcaaagttaccagggctactgggaagtatcccatttcctcctcccatattgaaagtttcaggatgtttcacactctccttcagtaaccttcc |
37745504 |
T |
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| Q |
201 |
agctccttccacatgaattgaacaaaatataaccaacacaatgcacaacatcaccacctttgctactc |
268 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37745503 |
agctccttccacatgatttgaacaaaatataaccaacacaatgcacaacatcaccacctttgcaactc |
37745436 |
T |
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