View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20127_low_19 (Length: 260)
Name: NF20127_low_19
Description: NF20127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20127_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 2330352 - 2330580
Alignment:
| Q |
17 |
atttctggccgaaagttacaaggattttgttgcgtaaacgatgggatgagttggcgaagttgcttaaagatcaagaagatgttctgcttccgctgataag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2330352 |
atttctggccgaaagttacaaggattttgttgcgtaaacgatgggatgagttggcgaagttgcttaaagatcaagaagatgttctgcttccgctgataag |
2330451 |
T |
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| Q |
117 |
agcgaggaagcatgttaaggagagcagattgaccaatattaatactgttgtttcgtatgtagatactcttatggagttggagttgcctcaggagaaacgg |
216 |
Q |
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|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2330452 |
agcgaggaagcatgttaaggagagtagattgaacaatattaatactgttgtttcgtatgtagatactcttatggagttggagttgcctcaggagaaacgg |
2330551 |
T |
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| Q |
217 |
aaattgagcgaggatgaaatgattagtct |
245 |
Q |
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|||||||| |||||||||||||||||||| |
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| T |
2330552 |
aaattgagtgaggatgaaatgattagtct |
2330580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 2303082 - 2303302
Alignment:
| Q |
17 |
atttctggccgaaagttacaaggattttgttgcgtaaacgatgggatgagttggcgaagttgcttaaagatcaagaagatgttctgcttccgctgataag |
116 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||| | ||||| |||||| ||||| |||||||| |||||||| |||||||||||||| |
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| T |
2303082 |
atttctggccgaaagttacaaggattttgttgcgtaaccgatggaaggagtttttgaagttacttaaggatcaagaggatgttctacttccgctgataag |
2303181 |
T |
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| Q |
117 |
agcgaggaagcatgttaaggagagcagattgaccaatattaatactgttgtttcgtatgtagatactcttatggagttggagttgcctcaggagaaacgg |
216 |
Q |
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| T |
2303182 |
agcgaggaaacaagttaaggagagtaaattgaacaatgttaatactgttgtttcgtatgcagatactcttctagagttggagttgcccgaggagaaacga |
2303281 |
T |
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| Q |
217 |
aaattgagcgaggatgaaatg |
237 |
Q |
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| T |
2303282 |
aagttgagtgagaatgaaatg |
2303302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 2293471 - 2293689
Alignment:
| Q |
19 |
ttctggccgaaagttacaaggattttgttgcgtaaacgatgggatgagttggcgaagttgcttaaagatcaagaagatgttctgcttccgctgataagag |
118 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||| ||||| |||||| ||||| |||||||| ||||||||||||||||||||||||| |
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| T |
2293471 |
ttctggccgaaagttacaaggattttgttgcgtaaccaatgggaggagtttttgaagttacttaaggatcaagaggatgttctgcttccgctgataagag |
2293570 |
T |
|
| Q |
119 |
cgaggaagcatgttaaggagagcagattgaccaatattaatactgttgtttcgtatgtagatactcttatggagttggagttgcctcaggagaaacggaa |
218 |
Q |
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| T |
2293571 |
caaggaagcaagttaaggagagtaaattgaacaatattaatactgttgtttcatatgcagatactctcttagagttagagtggcctgaggagaaacggaa |
2293670 |
T |
|
| Q |
219 |
attgagcgaggatgaaatg |
237 |
Q |
| |
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|||| ||| |||||||| |
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| T |
2293671 |
gctgagtgagaatgaaatg |
2293689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 2309800 - 2310020
Alignment:
| Q |
17 |
atttctggccgaaagttacaaggattttgttgcgtaaacgatgggatgagttggcgaagttgcttaaagatcaagaagatgttctgcttccgctgataag |
116 |
Q |
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|||||||||||||||||||||||||||||| |||||| | |||||| ||||| |||||| ||||| |||||||| ||||||||||||||||||||||| |
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| T |
2309800 |
atttctggccgaaagttacaaggattttgtcgcgtaaccaatgggaggagtttttgaagttacttaaggatcaagaggatgttctgcttccgctgataag |
2309899 |
T |
|
| Q |
117 |
agcgaggaagcatgttaaggagagcagattgaccaatattaatactgttgtttcgtatgtagatactcttatggagttggagttgcctcaggagaaacgg |
216 |
Q |
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||| |||||||| ||||||||||| | ||||| |||| |||||||||||||||| |||| |||||||||| | ||||| |||| |||| ||||||||||| |
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| T |
2309900 |
agcaaggaagcaagttaaggagagtaaattgaacaatgttaatactgttgtttcatatgcagatactcttttagagttagagtagcctgaggagaaacgg |
2309999 |
T |
|
| Q |
217 |
aaattgagcgaggatgaaatg |
237 |
Q |
| |
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|| |||| ||| |||||||| |
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| T |
2310000 |
aagctgagtgagaatgaaatg |
2310020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 2320783 - 2321003
Alignment:
| Q |
17 |
atttctggccgaaagttacaaggattttgttgcgtaaacgatgggatgagttggcgaagttgcttaaagatcaagaagatgttctgcttccgctgataag |
116 |
Q |
| |
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|||| |||||||||| ||||||||||||||||||||| |||||||| ||||| |||||| ||||| |||||||| ||||||||||||||||||||||| |
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| T |
2320783 |
atttttggccgaaaggtacaaggattttgttgcgtaaccgatgggaggagtttttgaagttacttaaggatcaagaggatgttctgcttccgctgataag |
2320882 |
T |
|
| Q |
117 |
agcgaggaagcatgttaaggagagcagattgaccaatattaatactgttgtttcgtatgtagatactcttatggagttggagttgcctcaggagaaacgg |
216 |
Q |
| |
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||| |||||||| ||||||||||| | ||||| |||| |||||| ||||||||||||| |||||||||| | |||||||||||||| |||||||||| |
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| T |
2320883 |
agcaaggaagcaagttaaggagagtaaattgaacaatgataatacagttgtttcgtatgcagatactcttttagagttggagttgcccgaggagaaacga |
2320982 |
T |
|
| Q |
217 |
aaattgagcgaggatgaaatg |
237 |
Q |
| |
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|| ||||| ||| |||||||| |
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| T |
2320983 |
aagttgagtgagaatgaaatg |
2321003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 2350658 - 2350886
Alignment:
| Q |
17 |
atttctggccgaaagttacaaggattttgttgcgtaaacgatgggatgagttggcgaagttgcttaaagatcaagaagatgttctgcttccgctgataag |
116 |
Q |
| |
|
|||||||||| |||||||| |||||||||| | ||||||||||| |||||| |||||| | || ||||||||||||||| ||||||||||||| || |
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| T |
2350658 |
atttctggccaaaagttactcggattttgttttgcaaacgatgggaagagttgttgaagttacgaaaggatcaagaagatgttttgcttccgctgattag |
2350757 |
T |
|
| Q |
117 |
agcgaggaagcatgttaaggagagcagattgaccaatattaatactgttgtttcgtatgtagatactcttatggagttggagttgcctcaggagaaacgg |
216 |
Q |
| |
|
|||||||||||| ||||| ||||| ||||||| |||| |||| |||| ||||||||||| ||||||||| ||||||||||||||||| | ||||||||| |
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| T |
2350758 |
agcgaggaagcaagttaaagagagtagattgaacaatgttaaccctgtagtttcgtatgtggatactcttttggagttggagttgcctgatgagaaacgg |
2350857 |
T |
|
| Q |
217 |
aaattgagcgaggatgaaatgattagtct |
245 |
Q |
| |
|
|||||||| || ||||||||| ||||||| |
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| T |
2350858 |
aaattgagtgaagatgaaatggttagtct |
2350886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 245
Target Start/End: Original strand, 2326636 - 2326865
Alignment:
| Q |
16 |
catttctggccgaaagttacaaggattttgttgcgtaaacgatgggatgagttggcgaagttgcttaaagatcaagaagatgttctgcttccgctgataa |
115 |
Q |
| |
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||||||||||| |||||| || |||||||||||||||||| |||||| || ||| || ||||| || |||||||||||||||| ||||||||||||||| |
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| T |
2326636 |
catttctggccaaaagttgcatggattttgttgcgtaaacaatgggaggaattgttgatgttgcgtagagatcaagaagatgttttgcttccgctgataa |
2326735 |
T |
|
| Q |
116 |
gagcgaggaagcatgttaaggagagcagattgaccaatattaatactgttgtttcgtatgtagatactcttatggagttggagttgcctcaggagaaacg |
215 |
Q |
| |
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||| ||||||||| |||||||||| | ||||| |||| ||||||||||||||| || || ||||| ||| |||||||||||||||| ||| ||||| |
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| T |
2326736 |
gagggaggaagcaagttaaggagactaaattgaacaatgctaatactgttgtttcctacgtggatacacttttggagttggagttgccaatggaaaaacg |
2326835 |
T |
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| Q |
216 |
gaaattgagcgaggatgaaatgattagtct |
245 |
Q |
| |
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||| |||| |||||||||||| ||||||| |
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| T |
2326836 |
gaagttgactgaggatgaaatggttagtct |
2326865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 38 - 237
Target Start/End: Original strand, 41126685 - 41126881
Alignment:
| Q |
38 |
ggattttgttgcgtaaacgatgggatgagttggcgaagttgcttaaagatcaagaagatgttctgcttccgctgataagagcgaggaagcatgttaagga |
137 |
Q |
| |
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||||||| || |||||||||||||| || ||| |||||||| |||||||||||||||||||| |||||||| ||||||||||||||| | | ||||| |
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| T |
41126685 |
ggattttattccgtaaacgatgggaggaattgttgaagttgcgaaaagatcaagaagatgttctacttccgctaataagagcgaggaaggaagccaagga |
41126784 |
T |
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| Q |
138 |
gagcagattgaccaatattaatactgttgtttcgtatgtagatactcttatggagttggagttgcctcaggagaaacggaaattgagcgaggatgaaatg |
237 |
Q |
| |
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|| ||||||| ||| || | ||||||||| |||| |||||||||| |||| ||||||||||| |||||||||| || |||| || ||||||||| |
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| T |
41126785 |
aaggagattgagcaa---aaacaatgttgtttcctatgcagatactcttttggaattggagttgcccgaggagaaacgcaagctgagtgaagatgaaatg |
41126881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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