View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20127_low_20 (Length: 252)
Name: NF20127_low_20
Description: NF20127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20127_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 49352146 - 49352374
Alignment:
| Q |
19 |
acaaaatcgtctaaggaacgtgattgctggtaaaaagttcttactcgtcttggacgatgtatggaatgaggatcgtgtcaaatgggttgagttgaagtat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49352146 |
acaaaatcgtctaaggaacgtgattgctggtaaaaagttcttactcgtcttggacgatgtatggaatgaggatcgtgtcaaatgggttgagttgaagtat |
49352245 |
T |
|
| Q |
119 |
ttaatacaagtaggcgctgaagaaagtaaagtcttggtgactacacgtagccactcaattgccaaaatgatgggcaccaacacatcatacattttggaag |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49352246 |
ttaatacaagtaggcgctgaagaaagtaaagtcttggtgactacacgtagccactcaattgccaaaatgatgggcaccaacacatcatacattttggaag |
49352345 |
T |
|
| Q |
219 |
gtctttctctagaggattccttatctgtg |
247 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
49352346 |
gtctttctctagaggattccttatctgtg |
49352374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 49340782 - 49340962
Alignment:
| Q |
19 |
acaaaatcgtctaaggaacgtgattgctggtaaaaagttcttactcgtcttggacgatgtatggaatgaggatcgtgtcaaatgggttgagttgaagtat |
118 |
Q |
| |
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|||||||| ||| || || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
49340782 |
acaaaatcatctgagaaatgtgattcctggtaaaaagttcttactcgtcttggacgatgtatggaatgaggatcgtgtcaaatgggttgagttgaagaat |
49340881 |
T |
|
| Q |
119 |
ttaatacaagtaggcgctgaagaaagtaaagtcttggtgactacacgtagccactcaattgccaaaatgatgggcaccaacacatcatacattttggaa |
217 |
Q |
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|||||||||||||| ||||||| ||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
49340882 |
ttaatacaagtaggtgctgaaggaagtaaact------------------ccactcaattgccaaaatgatgggcatcaacacatcatacattttggaa |
49340962 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 32784129 - 32783931
Alignment:
| Q |
19 |
acaaaatcgtctaaggaacgtgattgctggtaaaaagttcttactcgtcttggacgatgtatggaatgaggatcgtgtcaaatgggttgagttgaagtat |
118 |
Q |
| |
|
|||||||| ||| || || | ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
32784129 |
acaaaatcatctgagaaatgagattgctggtaaaaagttcttgctcgtcttggacgatgtatggaaccaggatcgtgtcaaatgggttgagttgaagaat |
32784030 |
T |
|
| Q |
119 |
ttaatacaagtaggcgctgaagaaagtaaagtcttggtgactacacgtagccactcaattgccaaaatgatgggcaccaacacatcatacattttggaa |
217 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32784029 |
ttaatacaagtaggtgctgaaggaagtaaagtcttagtgactacacgtagccactcaattgccaaaatgatgggcaccaacacatcatacattttggaa |
32783931 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 42 - 246
Target Start/End: Original strand, 29743524 - 29743728
Alignment:
| Q |
42 |
ttgctggtaaaaagttcttactcgtcttggacgatgtatggaatgaggatcgtgtcaaatgggttgagttgaagtatttaatacaagtaggcgctgaaga |
141 |
Q |
| |
|
||||||||||||| ||||| ||||||||||| || |||||||||||||||| |||||||||| | ||| ||||| ||||| |||||||||| | ||||| |
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| T |
29743524 |
ttgctggtaaaaaattctttctcgtcttggatgacgtatggaatgaggatcatgtcaaatggatagaggtgaagaatttattacaagtaggagatgaagg |
29743623 |
T |
|
| Q |
142 |
aagtaaagtcttggtgactacacgtagccactcaattgccaaaatgatgggcaccaacacatcatacattttggaaggtctttctctagaggattcctta |
241 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||| |||||||| |||| || |||||||||| |||||||||||| ||| | |||||||||| |
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| T |
29743624 |
aagtaaagttttagtgactacacgtagccactcaattgctgaaatgatgtgcacaaatacatcatacactttggaaggtctctctagaaaggattccttg |
29743723 |
T |
|
| Q |
242 |
tctgt |
246 |
Q |
| |
|
||||| |
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|
| T |
29743724 |
tctgt |
29743728 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 42 - 246
Target Start/End: Original strand, 29750561 - 29750765
Alignment:
| Q |
42 |
ttgctggtaaaaagttcttactcgtcttggacgatgtatggaatgaggatcgtgtcaaatgggttgagttgaagtatttaatacaagtaggcgctgaaga |
141 |
Q |
| |
|
||||||| ||||| ||||| ||||||||||| || || |||| |||||||||||||||||| | ||| ||||| || || |||||||||| | ||||| |
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| T |
29750561 |
ttgctggcaaaaaattcttgctcgtcttggatgacgtgtggagcgaggatcgtgtcaaatggatagaggtgaagaatctattacaagtaggagatgaagg |
29750660 |
T |
|
| Q |
142 |
aagtaaagtcttggtgactacacgtagccactcaattgccaaaatgatgggcaccaacacatcatacattttggaaggtctttctctagaggattcctta |
241 |
Q |
| |
|
||||||||| || |||||||||||||| ||||||||||| ||||||||| |||| |||||||| |||| |||| ||||||||||| |||||||||||| |
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| T |
29750661 |
aagtaaagttttagtgactacacgtagtcactcaattgctaaaatgatgtgcacaaacacatcttacactttgcaaggtctttctagagaggattccttg |
29750760 |
T |
|
| Q |
242 |
tctgt |
246 |
Q |
| |
|
||||| |
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|
| T |
29750761 |
tctgt |
29750765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 42 - 246
Target Start/End: Complemental strand, 29602733 - 29602529
Alignment:
| Q |
42 |
ttgctggtaaaaagttcttactcgtcttggacgatgtatggaatgaggatcgtgtcaaatgggttgagttgaagtatttaatacaagtaggcgctgaaga |
141 |
Q |
| |
|
||||||| ||||| ||||| || |||||||| || || |||| |||||||||||||||||| | ||| ||||| || || |||||||||| | ||||| |
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| T |
29602733 |
ttgctggcaaaaaattcttgcttgtcttggatgacgtgtggagcgaggatcgtgtcaaatggatagaggtgaagaatctattacaagtaggagatgaagg |
29602634 |
T |
|
| Q |
142 |
aagtaaagtcttggtgactacacgtagccactcaattgccaaaatgatgggcaccaacacatcatacattttggaaggtctttctctagaggattcctta |
241 |
Q |
| |
|
||||||||| || |||||||||||||| ||||||||||| ||||||||| |||| |||||||| |||| |||| ||||||||||| |||||||||||| |
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|
| T |
29602633 |
aagtaaagttttagtgactacacgtagtcactcaattgctaaaatgatgtgcacaaacacatcttacactttgcaaggtctttctagagaggattccttg |
29602534 |
T |
|
| Q |
242 |
tctgt |
246 |
Q |
| |
|
||||| |
|
|
| T |
29602533 |
tctgt |
29602529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 42 - 226
Target Start/End: Original strand, 35157679 - 35157863
Alignment:
| Q |
42 |
ttgctggtaaaaagttcttactcgtcttggacgatgtatggaatgaggatcgtgtcaaatgggttgagttgaagtatttaatacaagtaggcgctgaaga |
141 |
Q |
| |
|
|||||||| ||||||||||||| || ||||||||||| ||||||||||||||||||||||||| || || | | |||||||| || ||| ||| ||| |
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|
| T |
35157679 |
ttgctggtcaaaagttcttacttgttttggacgatgtgtggaatgaggatcgtgtcaaatgggaagaatttaggggtttaataccagcaggtgctcaagg |
35157778 |
T |
|
| Q |
142 |
aagtaaagtcttggtgactacacgtagccactcaattgccaaaatgatgggcaccaacacatcatacattttggaaggtctttct |
226 |
Q |
| |
|
||||||||| | |||||| |||||||| || | | || || ||||||||||| |||| || |||| |||| |||| |||||| |
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|
| T |
35157779 |
aagtaaagtactagtgacttcacgtagcgacacggtagctaacatgatgggcacttacacttcttacaatttgcaagggctttct |
35157863 |
T |
|
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