View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20127_low_3 (Length: 508)
Name: NF20127_low_3
Description: NF20127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20127_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 17 - 487
Target Start/End: Complemental strand, 33805127 - 33804657
Alignment:
| Q |
17 |
ataatcacgcgtccaagcaaagaatttgatgaagccgggactcaaattccatgagccaatggatattaccctcttcagatcttctaagttggagaaagta |
116 |
Q |
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| T |
33805127 |
ataatcacgcgtccaagcaaagaatttgatgaagccgggactcaaattctatgagccaatggatattaccctctgcagatcttctaagttggagaaagta |
33805028 |
T |
|
| Q |
117 |
aattcatagaatcctttcctaataacttgaactccccatcgccctagatctttccaatgagcagtaagtttgtttctcaaggaaaatacagttaaagggg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33805027 |
aattcatagaatcctttcctaataacttgaactccccatcgccctagatctttccaatgagcagtaagtttgtttctcaaggaaaatacagttagagggg |
33804928 |
T |
|
| Q |
217 |
tagcacctttagggtaaatgatcctagcatgtaagttgtgcttgcatgcttctaatcccaccgtgtaatcatcttctaggatggatatagagaccttatc |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
33804927 |
tagcacctttagggtaaatgatcctagcatgtaagttgtgcttgcatgcttctaatcccaccgtgtaatcatcttctgggatggatatagagaccttatc |
33804828 |
T |
|
| Q |
317 |
ccctttgatcaccgattgttgtagttgtgatgttggtatatcgcaaacgttgcttatggtttgtgctaaggttttcttaggtttggggtcggtttctggg |
416 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33804827 |
ccctttgatcaccgattgtggtagttgtgatgttggtatatcgcaaacgttgcttatggtttgtgctaaggttttcttaggtttggggtcggtttctggg |
33804728 |
T |
|
| Q |
417 |
caatcaggctttggtgttggtttcaaggggtcttgatataggcaaggctatggaatcaggacatgattaga |
487 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33804727 |
caatcaggctttggtgttggtttcagggggtcttgatataggcaaggctatggaatcaggacatgattaga |
33804657 |
T |
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