View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20127_low_5 (Length: 444)
Name: NF20127_low_5
Description: NF20127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20127_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 46467555 - 46467141
Alignment:
| Q |
1 |
acaccaaataattatgcatgaacataattaatattcaagacaaatccttagtacactcaatcaaggacagtaacaaatgattgcagctagcagagacacc |
100 |
Q |
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| T |
46467555 |
acaccaaataattatgcatgaacataattaatattcaagtcaaatccttagtacactcaatcaaggacagtaacaaatgattgcagctagcagagacacc |
46467456 |
T |
|
| Q |
101 |
acata-tggagaccatatgtcgcttgtcccacgcaccagtacatgatcagattcattccaccaaccatattcagctccttagtacaatcagcaccaaact |
199 |
Q |
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| T |
46467455 |
acaaaatggagaccatatgtcgcttgtcccacgcaccagtacatgatcagattcattccaccaaccatattcagctccttagtacaatcagcaccaaact |
46467356 |
T |
|
| Q |
200 |
atttcacagtcaatcaccatatgttataaaacatattcctatactccaatttgttttttagcacaattagggaacaccgatattattagttgattccaat |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
46467355 |
atttcacagtcaatcaccatatgttataaaacatattcctatactccaatttgttttttagcacaattagggaacacc---aatattagttgattccaat |
46467259 |
T |
|
| Q |
300 |
ttannnnnnngctgaatttcatgtaaaacgtactaaagtatctttctcgatatttaatgcaaaaactcatttaactatccgtgttaaatgtttttctaat |
399 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
46467258 |
ttatttttttgctgaatttcatgtaaaacgtactaaagtatctttctcgatatttaatgcaaaaactcatttaactatccgcgttaaatgtttttctaat |
46467159 |
T |
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| Q |
400 |
taaatgaaagatatatta |
417 |
Q |
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|||||||||||||||||| |
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| T |
46467158 |
taaatgaaagatatatta |
46467141 |
T |
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