View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20127_low_6 (Length: 439)
Name: NF20127_low_6
Description: NF20127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20127_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 48016874 - 48017301
Alignment:
| Q |
1 |
acttatagcaagaggaaacttgtcgtgtaagatatatgtgtaccgaagtggatccagtatgagcagggccatgtccagatagtgtgagatattcgaggaa |
100 |
Q |
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| T |
48016874 |
acttatagcaagaggaaacttgtcgtgtaagatatatgtgtaccgaagtggatccagtatgagcagggccatgtccagatagtgtgagatattcgaggaa |
48016973 |
T |
|
| Q |
101 |
atattgtggaacagatagacctatgaagagagaaaagccgacaatgaacattgatctgtagctgtttagattgcagaactgaagaaaaccaagtccagct |
200 |
Q |
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| T |
48016974 |
atattgtggaacagatagacctatgaagagagaaaagccgacaatgaacattgatctgtagctgtttagattgcaaaactgaagaaaaccaagtccagct |
48017073 |
T |
|
| Q |
201 |
gaagctgctcatcacagaagaaacatgacattcaaatcagaaagaatttgacattttaaaggaacaa---aatgcaatgcatgaaaatagtattgtaaat |
297 |
Q |
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| T |
48017074 |
gaagctgctcatcacagaagaaacatgacattcaaatcagaaagaatttgacattttaaaggaacaaaacaatgcaatgcatgaaaatagtattgtaaat |
48017173 |
T |
|
| Q |
298 |
acattttacatgtcaagtttcattgaaatcacttatttgttttttggtttctggttcatgaaattctcagttcttgcagaccaacataaggatgatataa |
397 |
Q |
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| T |
48017174 |
acattttacatgtcaagtttcattgaaatcactaatttgttttttggtttctggttcatcaaattctcagttcttgcagaccaacataaggatgatataa |
48017273 |
T |
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| Q |
398 |
ttattatctctaagtgatatgaaattat |
425 |
Q |
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| T |
48017274 |
ttattatctctaagtgatatgaaattat |
48017301 |
T |
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