View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20127_low_7 (Length: 435)

Name: NF20127_low_7
Description: NF20127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20127_low_7
NF20127_low_7
[»] chr6 (18 HSPs)
chr6 (30-195)||(31472436-31472601)
chr6 (37-139)||(20139215-20139317)
chr6 (37-139)||(22193552-22193654)
chr6 (38-133)||(27966763-27966858)
chr6 (39-163)||(15065930-15066054)
chr6 (45-192)||(11369529-11369677)
chr6 (39-192)||(10997743-10997896)
chr6 (36-133)||(31655540-31655637)
chr6 (39-127)||(12272224-12272312)
chr6 (47-129)||(3044290-3044372)
chr6 (59-133)||(17869273-17869347)
chr6 (39-156)||(32465636-32465753)
chr6 (28-154)||(4170937-4171063)
chr6 (28-133)||(12076652-12076755)
chr6 (89-156)||(12577324-12577391)
chr6 (59-125)||(17879033-17879099)
chr6 (67-156)||(2067165-2067254)
chr6 (89-174)||(29034474-29034559)
[»] chr5 (34 HSPs)
chr5 (28-197)||(38976191-38976360)
chr5 (22-192)||(9996226-9996396)
chr5 (60-174)||(4975762-4975876)
chr5 (39-192)||(6955739-6955892)
chr5 (39-192)||(35038700-35038853)
chr5 (39-192)||(38355973-38356126)
chr5 (39-191)||(20338457-20338609)
chr5 (30-193)||(31230247-31230410)
chr5 (30-133)||(33908135-33908238)
chr5 (39-192)||(6238185-6238339)
chr5 (39-192)||(6899895-6900049)
chr5 (39-192)||(35838110-35838264)
chr5 (39-192)||(42860263-42860416)
chr5 (39-192)||(4699877-4700031)
chr5 (39-192)||(24477286-24477440)
chr5 (39-192)||(21731717-21731870)
chr5 (40-185)||(37205993-37206138)
chr5 (39-132)||(10642053-10642146)
chr5 (84-174)||(3296166-3296256)
chr5 (28-156)||(1398344-1398473)
chr5 (28-133)||(36866108-36866213)
chr5 (60-133)||(38986612-38986685)
chr5 (21-133)||(36016250-36016368)
chr5 (42-155)||(40917891-40918004)
chr5 (37-100)||(74980-75043)
chr5 (28-95)||(42092553-42092620)
chr5 (47-101)||(17085407-17085461)
chr5 (89-174)||(8320479-8320564)
chr5 (49-191)||(6453024-6453167)
chr5 (91-133)||(3436727-3436769)
chr5 (23-156)||(28759372-28759505)
chr5 (105-174)||(17320426-17320495)
chr5 (89-174)||(39479386-39479471)
chr5 (89-133)||(17016523-17016567)
[»] chr4 (33 HSPs)
chr4 (28-174)||(32767574-32767720)
chr4 (23-121)||(3415234-3415332)
chr4 (28-149)||(43286255-43286376)
chr4 (28-138)||(52464100-52464210)
chr4 (39-192)||(20034248-20034401)
chr4 (39-192)||(39345835-39345989)
chr4 (37-120)||(19240771-19240854)
chr4 (39-186)||(44341197-44341344)
chr4 (39-192)||(17543751-17543905)
chr4 (39-132)||(1705217-1705309)
chr4 (39-192)||(45522504-45522657)
chr4 (39-192)||(47295568-47295721)
chr4 (39-174)||(9455305-9455440)
chr4 (39-133)||(27870026-27870120)
chr4 (39-133)||(32594047-32594141)
chr4 (36-130)||(51401354-51401448)
chr4 (43-163)||(54134471-54134591)
chr4 (39-133)||(951377-951471)
chr4 (49-192)||(2323745-2323889)
chr4 (37-119)||(41361259-41361341)
chr4 (39-156)||(34030301-34030417)
chr4 (37-125)||(1324945-1325033)
chr4 (47-150)||(34859052-34859155)
chr4 (39-107)||(54787555-54787623)
chr4 (389-424)||(3414964-3414999)
chr4 (90-133)||(16029785-16029828)
chr4 (67-156)||(6643303-6643392)
chr4 (67-156)||(15194500-15194589)
chr4 (67-156)||(50097416-50097505)
chr4 (105-174)||(56114185-56114254)
chr4 (67-156)||(56264413-56264502)
chr4 (89-133)||(16623505-16623549)
chr4 (23-129)||(50004724-50004829)
[»] chr2 (22 HSPs)
chr2 (37-174)||(15614124-15614261)
chr2 (23-130)||(5271059-5271166)
chr2 (39-192)||(15560523-15560676)
chr2 (40-130)||(9470828-9470918)
chr2 (39-192)||(29201363-29201516)
chr2 (39-192)||(40000744-40000896)
chr2 (28-184)||(38838003-38838159)
chr2 (39-133)||(20922776-20922870)
chr2 (39-133)||(21747420-21747514)
chr2 (39-133)||(25096307-25096401)
chr2 (39-129)||(42730734-42730824)
chr2 (37-106)||(17071256-17071325)
chr2 (40-133)||(17920791-17920884)
chr2 (38-106)||(17088255-17088323)
chr2 (48-192)||(40860992-40861136)
chr2 (39-106)||(17077328-17077395)
chr2 (37-174)||(4564919-4565055)
chr2 (39-130)||(26556501-26556593)
chr2 (67-156)||(1002507-1002596)
chr2 (89-186)||(10822250-10822347)
chr2 (67-156)||(27495903-27495992)
chr2 (94-174)||(25459928-25460008)
[»] chr3 (31 HSPs)
chr3 (37-276)||(6888603-6888829)
chr3 (37-197)||(42854244-42854398)
chr3 (28-139)||(27969464-27969575)
chr3 (28-139)||(33982983-33983094)
chr3 (39-192)||(21075838-21075991)
chr3 (37-132)||(19975781-19975876)
chr3 (39-192)||(43746233-43746387)
chr3 (39-192)||(46311861-46312014)
chr3 (42-192)||(27877532-27877682)
chr3 (39-192)||(46219100-46219254)
chr3 (23-120)||(24310788-24310885)
chr3 (37-133)||(43735985-43736080)
chr3 (23-184)||(21389730-21389891)
chr3 (345-426)||(33983314-33983390)
chr3 (345-426)||(42853893-42853969)
chr3 (37-125)||(2869006-2869094)
chr3 (242-349)||(27969661-27969760)
chr3 (345-426)||(27969809-27969885)
chr3 (39-151)||(50737934-50738046)
chr3 (39-151)||(50774808-50774920)
chr3 (375-426)||(6888349-6888400)
chr3 (37-94)||(20510582-20510639)
chr3 (324-391)||(6888425-6888492)
chr3 (242-302)||(42854139-42854194)
chr3 (89-156)||(32774448-32774515)
chr3 (317-368)||(33983237-33983288)
chr3 (89-156)||(54313352-54313419)
chr3 (67-156)||(7910165-7910254)
chr3 (67-156)||(26823039-26823128)
chr3 (67-156)||(43087990-43088079)
chr3 (89-133)||(3995071-3995115)
[»] chr7 (20 HSPs)
chr7 (28-139)||(47381483-47381594)
chr7 (28-133)||(33604547-33604652)
chr7 (37-133)||(7505238-7505334)
chr7 (39-192)||(23025165-23025318)
chr7 (22-192)||(10993172-10993343)
chr7 (37-132)||(31272129-31272224)
chr7 (39-190)||(1873639-1873790)
chr7 (39-192)||(39493996-39494150)
chr7 (37-133)||(35709894-35709990)
chr7 (90-191)||(17475690-17475791)
chr7 (90-191)||(17577423-17577524)
chr7 (28-133)||(2621449-2621554)
chr7 (39-163)||(16526191-16526315)
chr7 (42-151)||(17511295-17511404)
chr7 (42-151)||(17541810-17541919)
chr7 (39-133)||(41200226-41200320)
chr7 (39-133)||(49112541-49112635)
chr7 (89-174)||(47099197-47099282)
chr7 (90-151)||(4266913-4266974)
chr7 (67-156)||(47761690-47761779)
[»] chr8 (18 HSPs)
chr8 (28-139)||(42739365-42739476)
chr8 (39-192)||(30436414-30436568)
chr8 (39-192)||(35813383-35813537)
chr8 (23-163)||(3940656-3940797)
chr8 (39-192)||(3654255-3654408)
chr8 (37-185)||(15243774-15243922)
chr8 (39-133)||(2349696-2349789)
chr8 (37-121)||(9201110-9201194)
chr8 (59-130)||(6142918-6142989)
chr8 (36-132)||(29894474-29894570)
chr8 (47-150)||(28968204-28968307)
chr8 (67-156)||(11202189-11202278)
chr8 (39-107)||(19293590-19293658)
chr8 (23-156)||(26098251-26098384)
chr8 (67-156)||(5927100-5927189)
chr8 (67-156)||(6266293-6266382)
chr8 (67-156)||(24101755-24101844)
chr8 (67-156)||(38231735-38231824)
[»] chr1 (25 HSPs)
chr1 (28-139)||(46237599-46237710)
chr1 (39-192)||(12745580-12745734)
chr1 (39-192)||(12756569-12756723)
chr1 (39-192)||(9660775-9660928)
chr1 (39-192)||(43781119-43781272)
chr1 (39-192)||(42763201-42763354)
chr1 (39-192)||(45757190-45757343)
chr1 (37-133)||(32057557-32057653)
chr1 (39-133)||(33189029-33189123)
chr1 (36-184)||(31489461-31489609)
chr1 (39-133)||(48470438-48470532)
chr1 (43-174)||(45038985-45039116)
chr1 (39-133)||(49229174-49229267)
chr1 (39-133)||(6501612-6501706)
chr1 (41-192)||(47188516-47188665)
chr1 (35-129)||(30533392-30533486)
chr1 (28-129)||(4220876-4220977)
chr1 (89-174)||(20722232-20722317)
chr1 (90-135)||(45565814-45565859)
chr1 (28-174)||(17331253-17331400)
chr1 (61-131)||(15699324-15699394)
chr1 (67-156)||(39995470-39995559)
chr1 (67-156)||(41310539-41310628)
chr1 (89-174)||(50511973-50512058)
chr1 (89-133)||(44922234-44922278)
[»] scaffold1449 (1 HSPs)
scaffold1449 (37-106)||(1581-1650)
[»] scaffold0219 (1 HSPs)
scaffold0219 (49-192)||(16587-16730)
[»] scaffold0295 (1 HSPs)
scaffold0295 (47-131)||(6177-6261)
[»] scaffold0007 (1 HSPs)
scaffold0007 (89-156)||(231673-231740)
[»] scaffold0124 (1 HSPs)
scaffold0124 (67-156)||(40058-40147)
[»] scaffold0019 (1 HSPs)
scaffold0019 (89-133)||(103136-103180)


Alignment Details
Target: chr6 (Bit Score: 118; Significance: 5e-60; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 30 - 195
Target Start/End: Complemental strand, 31472601 - 31472436
Alignment:
Q  30 tgtcaaaatgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaa 129  Q
    |||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||    
T  31472601 tgtcaaaacgggccggcccgaaagcccgaataaaacgtagggcttgggcctaataattgcagcccgaatttttctagggctttttagccaggcccgaaaa 31472502  T
Q  130 agcctggagctagttagggctagcccgttcgggccacgggcagcctggcagcccgcaaaaaattaa 195  Q
    |||| |||||  |||| |||||||||||||||||||||||||||| |||| |||||||||||||||    
T  31472501 agccaggagcccgttatggctagcccgttcgggccacgggcagcccggcatcccgcaaaaaattaa 31472436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 37 - 139
Target Start/End: Original strand, 20139215 - 20139317
Alignment:
Q  37 atgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctgg 136  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  20139215 atgggccggcccgaaagcccgaataaaacgtagggcttgggcctaataattgcagcccgaatttttccagggctttttagcccggcccgaaaaagcccgg 20139314  T
Q  137 agc 139  Q
    |||    
T  20139315 agc 20139317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 37 - 139
Target Start/End: Complemental strand, 22193654 - 22193552
Alignment:
Q  37 atgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctgg 136  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  22193654 atgggccggcccgaaagcccgaataaaacgtagggcttgggcctaataattgcagcccgaatttttccagggctttttagcccggcccgaaaaagcccgg 22193555  T
Q  137 agc 139  Q
    |||    
T  22193554 agc 22193552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 38 - 133
Target Start/End: Complemental strand, 27966858 - 27966763
Alignment:
Q  38 tgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcc 133  Q
    ||||||||||||||||||||  ||||| |||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||  |||||||    
T  27966858 tgggccggcccgaaagcccgagtaaaatgtagggcttgggcctaataattgcagcccaaatttttccagggctttttagcccggcccataaaagcc 27966763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 39 - 163
Target Start/End: Original strand, 15065930 - 15066054
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggag 138  Q
    ||||||||||||||||||| |||||| |||||| ||||||| ||||||||||||||||| ||    ||||||||||||||||||||| |||||||    |    
T  15065930 gggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaattgaagagggctttttagcccggcccgtaaaagcccttgg 15066029  T
Q  139 ctagttagggctagcccgttcgggc 163  Q
    |  |||||||||||||||| |||||    
T  15066030 cccgttagggctagcccgtccgggc 15066054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 45 - 192
Target Start/End: Complemental strand, 11369677 - 11369529
Alignment:
Q  45 gcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttcc-agggctttttagcccggcccgaaaaagcctggagctagt 143  Q
    ||||||||||||| |||||| |||| ||||||||| ||||||||||||||||| |||    ||||||||||||||||||||| |||||||    ||  ||    
T  11369677 gcccgaaagcccgaataaaatgtagagtttgggccgaataattggagcccgaaatttaaagagggctttttagcccggcccgtaaaagcccttggcccgt 11369578  T
Q  144 tagggctagcccgttcgggccacgggcagcctggcagcccgcaaaaaat 192  Q
    |||||||||||||| |||||  ||||| ||| |  ||||||||||||||    
T  11369577 tagggctagcccgtccgggctccgggctgcccgaaagcccgcaaaaaat 11369529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 39 - 192
Target Start/End: Original strand, 10997743 - 10997896
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggag 138  Q
    |||||| |||||||||||| |||||| | |||| ||||||| ||||||||||||||||| ||    ||||||||||||||||||||| |||||||    |    
T  10997743 gggccgacccgaaagcccgaataaaatggagggcttgggccgaataattggagcccgaaattgaagagggctttttagcccggcccgtaaaagcccttgg 10997842  T
Q  139 ctagttagggctagcccgttcgggccacgggcagcctggcagcccgcaaaaaat 192  Q
    |  |||| ||||||||||| |||||  || || ||| || ||||||||||||||    
T  10997843 cccgttatggctagcccgtccgggcttcgagctgcccggaagcccgcaaaaaat 10997896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 36 - 133
Target Start/End: Complemental strand, 31655637 - 31655540
Alignment:
Q  36 aatgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcc 133  Q
    |||||||| ||||||||||||| ||||||| |||||||||||||||| ||||  |||||||||   | | |||||||||||||||| |||||||||||    
T  31655637 aatgggccagcccgaaagcccgaataaaacatagggtttgggcctaaaaattacagcccgaataaattccgggctttttagcccggtccgaaaaagcc 31655540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 39 - 127
Target Start/End: Complemental strand, 12272312 - 12272224
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaa 127  Q
    ||||||||||||||||||| |||||| ||||||  |||||| |  ||| | ||||||||||||| ||||||||||||||||||||||||    
T  12272312 gggccggcccgaaagcccgaataaaatgtagggcctgggccgataaatagcagcccgaattttttcagggctttttagcccggcccgaa 12272224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 47 - 129
Target Start/End: Original strand, 3044290 - 3044372
Alignment:
Q  47 ccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaa 129  Q
    ||||||||||| |||||| | ||||  |||||| |||||| | ||||||||||||| ||||| ||||||||||||||||||||    
T  3044290 ccgaaagcccgaataaaatgcagggcctgggccgaataatagcagcccgaattttttcagggttttttagcccggcccgaaaa 3044372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 17869347 - 17869273
Alignment:
Q  59 ataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcc 133  Q
    ||||||| ||||| ||||||  || ||||  ||||||||||||| ||||| ||||||||||||||||||||||||    
T  17869347 ataaaacttagggcttgggctaaaaaattccagcccgaattttttcagggttttttagcccggcccgaaaaagcc 17869273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 39 - 156
Target Start/End: Complemental strand, 32465753 - 32465636
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttag-cccggcccgaaaaagcctgga 137  Q
    |||||| |||||||||||| | |||| |||||| |||||||||| ||| | | |||||||||   ||||||||||| | ||||||||| ||||||| | |    
T  32465753 gggccgacccgaaagcccgaa-aaaatgtagggcttgggcctaaaaatggcaacccgaatttaaacagggcttttttgacccggcccgtaaaagcccgaa 32465655  T
Q  138 gctagttagggctagcccg 156  Q
    ||| |||||||||||||||    
T  32465654 gctcgttagggctagcccg 32465636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 154
Target Start/End: Complemental strand, 4171063 - 4170937
Alignment:
Q  28 gctgtcaaaatgggccggcccgaa-agcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccga 126  Q
    ||||||||||||||||||||||   |||||| |||||   |||||||||||||||| |  | |||||||||||||   ||||||||||||||||||||      
T  4171063 gctgtcaaaatgggccggcccgtttagcccgaataaata-tagggtttgggcctaaaatattgagcccgaattttaatagggctttttagcccggccctt 4170965  T
Q  127 aaaagcctggagctagttagggctagcc 154  Q
    ||||||| ||  |  |||||||||||||    
T  4170964 aaaagcccggtacccgttagggctagcc 4170937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 12076755 - 12076652
Alignment:
Q  28 gctgtcaaaatgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaa 127  Q
    ||||| ||||||| ||| |||||||||||| |||||| ||||||  ||| || |  ||| | ||||| ||||||| |||||||||||| |||||||||||    
T  12076755 gctgttaaaatggaccg-cccgaaagcccgaataaaatgtagggcctgg-ccgataaatagcagcccaaattttttcagggctttttaacccggcccgaa 12076658  T
Q  128 aaagcc 133  Q
    ||||||    
T  12076657 aaagcc 12076652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 156
Target Start/End: Complemental strand, 12577391 - 12577324
Alignment:
Q  89 gagcccgaatttttccagggctttttagcccggcccgaaaaagcctggagctagttagggctagcccg 156  Q
    |||||||||||||   ||||||||||||||| |||| |||||||||||  |  |||||||||||||||    
T  12577391 gagcccgaattttaatagggctttttagcccagccctaaaaagcctggtacccgttagggctagcccg 12577324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 125
Target Start/End: Complemental strand, 17879099 - 17879033
Alignment:
Q  59 ataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccg 125  Q
    ||||||| ||||| ||||||  || ||||  ||||||||||||| ||||||||||||||| ||||||    
T  17879099 ataaaacttagggcttgggctaaaaaattccagcccgaattttttcagggctttttagcctggcccg 17879033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 156
Target Start/End: Original strand, 2067165 - 2067254
Alignment:
Q  67 tagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggagctagttagggctagcccg 156  Q
    ||||| |||||||||| |  | |||||||||||||   ||||||||||||||||||||  ||||||| ||  |  |||||||||||||||    
T  2067165 tagggcttgggcctaaaatattgagcccgaattttaatagggctttttagcccggcccttaaaagcccggtacccgttagggctagcccg 2067254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 174
Target Start/End: Complemental strand, 29034559 - 29034474
Alignment:
Q  89 gagcccgaatttttccagggctttttagcccggcccgaaaaagcctggagctagttagggctagcccgttcgggccacgggcagcc 174  Q
    |||||||||||||   |||||||||||||||||||| |||||||| ||  |   ||||||||||||||  |||||| |||| ||||    
T  29034559 gagcccgaattttaatagggctttttagcccggccctaaaaagcccggtacccattagggctagcccgaacgggccgcgggtagcc 29034474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 3e-55; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 28 - 197
Target Start/End: Complemental strand, 38976360 - 38976191
Alignment:
Q  28 gctgtcaaaatgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaa 127  Q
    |||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||| | | |||||||||||||||||||||    
T  38976360 gctgtcaaaacgggccggcccgaaagcccgaataaaacgtagggcttgggcctaataattgcagcccgaattttccaaaggctttttagcccggcccgaa 38976261  T
Q  128 aaagcctggagctagttagggctagcccgttcgggccacgggcagcctggcagcccgcaaaaaattaaga 197  Q
    |||||| | |||  |||||||||||||| || ||||||||||| ||| ||||||||||||||||||||||    
T  38976260 aaagcccgtagcccgttagggctagcccatttgggccacgggcggcccggcagcccgcaaaaaattaaga 38976191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 22 - 192
Target Start/End: Original strand, 9996226 - 9996396
Alignment:
Q  22 attagggctgtcaaaatgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccgg 121  Q
    ||||| |||||||||||||||||| ||||||||||| |||||| |||||| ||||||| ||||||||||||||||| ||    |||||||||||||||||    
T  9996226 attagagctgtcaaaatgggccgggccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaattgaagagggctttttagcccgg 9996325  T
Q  122 cccgaaaaagcctggagctagttagggctagcccgttcgggccacgggcagcctggcagcccgcaaaaaat 192  Q
    |||| |||||||    ||  |||||||||||||||| |||||  ||||| ||| || ||||||||||||||    
T  9996326 cccgtaaaagcccttggcccgttagggctagcccgtccgggctccgggctgcccggaagcccgcaaaaaat 9996396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 60 - 174
Target Start/End: Complemental strand, 4975876 - 4975762
Alignment:
Q  60 taaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggagctagttagggctagcccgttc 159  Q
    ||||||||||||||||||||||||||||| ||| |||||||||| | | ||||||||||||| ||||||||||| ||||   |||||||||||||| |||    
T  4975876 taaaacgtagggtttgggcctaataattgtagctcgaatttttctaagactttttagcccggtccgaaaaagcccggagtccgttagggctagcccattc 4975777  T
Q  160 gggccacgggcagcc 174  Q
    |||||||||||||||    
T  4975776 gggccacgggcagcc 4975762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 39 - 192
Target Start/End: Complemental strand, 6955892 - 6955739
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggag 138  Q
    ||||||||||||||||||| |||||| |||||| ||||||| ||||||||||||||||| ||    ||||||||||||||||||||| |||||||    |    
T  6955892 gggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaattgaagagggctttttagcccggcccgtaaaagcccttgg 6955793  T
Q  139 ctagttagggctagcccgttcgggccacgggcagcctggcagcccgcaaaaaat 192  Q
    |  |||||||||||||||| |||||  ||||| ||| || ||||||||||||||    
T  6955792 cccgttagggctagcccgtccgggctccgggctgcccggaagcccgcaaaaaat 6955739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 39 - 192
Target Start/End: Complemental strand, 35038853 - 35038700
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggag 138  Q
    ||||||||||||||||||| |||||| |||||| ||||||| ||||||||||||||||| ||    ||||||||||||||||||||| |||||||    |    
T  35038853 gggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaattgaagagggctttttagcccggcccgtaaaagcccttgg 35038754  T
Q  139 ctagttagggctagcccgttcgggccacgggcagcctggcagcccgcaaaaaat 192  Q
    |  ||||||||||||||||||||||  | ||| ||| || ||||||||||||||    
T  35038753 cccgttagggctagcccgttcgggctccaggctgcccggaagcccgcaaaaaat 35038700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 39 - 192
Target Start/End: Complemental strand, 38356126 - 38355973
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggag 138  Q
    ||||||||||||||||||| |||||| |||||| ||||||| ||||||||||||||||| ||    ||||||||||||||||||||| |||||||    |    
T  38356126 gggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaattgaagagggctttttagcccggcccgtaaaagcccttgg 38356027  T
Q  139 ctagttagggctagcccgttcgggccacgggcagcctggcagcccgcaaaaaat 192  Q
    |  |||||||||||||||| |||||  ||||| ||| || ||||||||||||||    
T  38356026 cccgttagggctagcccgtccgggctccgggctgcccggaagcccgcaaaaaat 38355973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 39 - 191
Target Start/End: Complemental strand, 20338609 - 20338457
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggag 138  Q
    ||||||||||||||| ||| |||||| ||||||  | |||| |  ||| | ||||||||||||| ||||| |||||||||||| ||||||||||| | ||    
T  20338609 gggccggcccgaaagtccgaataaaatgtagggcctaggccgataaatagcagcccgaattttttcagggatttttagcccggtccgaaaaagcccgaag 20338510  T
Q  139 ctagttagggctagcccgttcgggccacgggcagcctggcagcccgcaaaaaa 191  Q
    || |||||||||||||||||||| | | |||||||| |||| |||||||||||    
T  20338509 ctcgttagggctagcccgttcggactaagggcagcccggcaacccgcaaaaaa 20338457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 30 - 193
Target Start/End: Original strand, 31230247 - 31230410
Alignment:
Q  30 tgtcaaaatgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaa 129  Q
    ||||||||||| |||| | ||||||||| |||||||| ||||  |||||| || |  ||||||||||||||||||||||||||||||||||||||| |||    
T  31230247 tgtcaaaatggaccgggctgaaagcccgaataaaacgcagggcctgggccgaaaagctggagcccgaatttttccagggctttttagcccggcccgtaaa 31230346  T
Q  130 agcctggagctagttagggctagcccgttcgggccacgggcagcctggcagcccgcaaaaaatt 193  Q
    | || | | | |||| |||| ||||||||||||| ||| ||||||   |||||||| |||||||    
T  31230347 atcccgtaaccagttcgggccagcccgttcgggctacgcgcagcccaccagcccgccaaaaatt 31230410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 30 - 133
Target Start/End: Complemental strand, 33908238 - 33908135
Alignment:
Q  30 tgtcaaaatgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaa 129  Q
    |||||||||||||||| ||||||||||| |||||||  ||||  |||||| || |||||||||||||||||||| ||||||||||||||||||||| |||    
T  33908238 tgtcaaaatgggccggtccgaaagcccgaataaaacacagggcctgggccgaaaaattggagcccgaatttttctagggctttttagcccggcccgtaaa 33908139  T
Q  130 agcc 133  Q
    ||||    
T  33908138 agcc 33908135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 39 - 192
Target Start/End: Original strand, 6238185 - 6238339
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttcc-agggctttttagcccggcccgaaaaagcctgga 137  Q
    ||||||||||||||||||| |||||| |||||| ||||||| ||||||||||||||||| |||    ||||||||||||||||||||| |||||||        
T  6238185 gggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaatttgaagagggctttttagcccggcccgtaaaagcccttg 6238284  T
Q  138 gctagttagggctagcccgttcgggccacgggcagcctggcagcccgcaaaaaat 192  Q
    ||  |||||||||||||||| |||||  ||||| ||| || ||||||||||||||    
T  6238285 gcccgttagggctagcccgtccgggctccgggctgcccggaagcccgcaaaaaat 6238339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 39 - 192
Target Start/End: Original strand, 6899895 - 6900049
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttcc-agggctttttagcccggcccgaaaaagcctgga 137  Q
    ||||||||||||||||||| |||||| |||||| ||||||| ||||||||||||||||| |||    ||||||||||||||||||||| |||||||        
T  6899895 gggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaatttgaagagggctttttagcccggcccgtaaaagcccttg 6899994  T
Q  138 gctagttagggctagcccgttcgggccacgggcagcctggcagcccgcaaaaaat 192  Q
    ||  |||||||||||||||| |||||  ||||| ||| || ||||||||||||||    
T  6899995 gcccgttagggctagcccgtccgggctccgggctgcccggaagcccgcaaaaaat 6900049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 39 - 192
Target Start/End: Original strand, 35838110 - 35838264
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttcc-agggctttttagcccggcccgaaaaagcctgga 137  Q
    ||||||||||||||||||| |||||| |||||| ||||||| ||||||||||||||||| |||    ||||||||||||||||||||| |||||||        
T  35838110 gggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaatttgaatagggctttttagcccggcccgtaaaagcccttg 35838209  T
Q  138 gctagttagggctagcccgttcgggccacgggcagcctggcagcccgcaaaaaat 192  Q
    ||  |||||||||||||||| |||||  ||||| ||| || ||||||||||||||    
T  35838210 gcccgttagggctagcccgtccgggctccgggctgcccggaagcccgcaaaaaat 35838264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 39 - 192
Target Start/End: Complemental strand, 42860416 - 42860263
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggag 138  Q
    ||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||| ||    |||| |||||||||| ||||| |||||||    |    
T  42860416 gggccggcccgaaagcccgaataaaatgtagggtttgggccgaataattggagcccgaaattgaagagggttttttagcccagcccgtaaaagcccttgg 42860317  T
Q  139 ctagttagggctagcccgttcgggccacgggcagcctggcagcccgcaaaaaat 192  Q
    |  |||||||||||||||| |||||  ||||| ||| || ||||||||||||||    
T  42860316 cccgttagggctagcccgtccgggctccgggctgcccggaagcccgcaaaaaat 42860263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 39 - 192
Target Start/End: Complemental strand, 4700031 - 4699877
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttcc-agggctttttagcccggcccgaaaaagcctgga 137  Q
    ||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||| |||    ||||||||||||||||||||| |||||||        
T  4700031 gggccggcccgaaagcccgaataaaatgtagggtttgggccgaataattggagcccgaaatttgaatagggctttttagcccggcccgtaaaagcccttg 4699932  T
Q  138 gctagttagggctagcccgttcgggccacgggcagcctggcagcccgcaaaaaat 192  Q
    ||  |||||||||||||||| |||||  ||||| ||| |  |||||||| |||||    
T  4699931 gcccgttagggctagcccgtccgggctccgggctgcccgaaagcccgcacaaaat 4699877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 39 - 192
Target Start/End: Original strand, 24477286 - 24477440
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttcc-agggctttttagcccggcccgaaaaagcctgga 137  Q
    ||||||||||||||||||| |||||| |||||| ||| ||| ||||||||||||||||| |||    ||||||||||||||||||||| |||||||        
T  24477286 gggccggcccgaaagcccgaataaaatgtagggcttgagccgaataattggagcccgaaatttgaagagggctttttagcccggcccgtaaaagcccttg 24477385  T
Q  138 gctagttagggctagcccgttcgggccacgggcagcctggcagcccgcaaaaaat 192  Q
    ||  |||||||||||||||| |||||  ||||| ||| || ||||||||||||||    
T  24477386 gcccgttagggctagcccgtccgggctccgggctgcccggaagcccgcaaaaaat 24477440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 39 - 192
Target Start/End: Original strand, 21731717 - 21731870
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggag 138  Q
    ||||||| ||||||||||| |||||| |||||| ||||||| ||||||||||||||||| ||    ||||||||||||||||||||| |||||||    |    
T  21731717 gggccgggccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaattgaagagggctttttagcccggcccgtaaaagcccttgg 21731816  T
Q  139 ctagttagggctagcccgttcgggccacgggcagcctggcagcccgcaaaaaat 192  Q
    |  |||||||||||||||| |||||  | ||| ||| || ||||||||||||||    
T  21731817 cccgttagggctagcccgtccgggctccaggctgcccggaagcccgcaaaaaat 21731870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 40 - 185
Target Start/End: Complemental strand, 37206138 - 37205993
Alignment:
Q  40 ggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggagc 139  Q
    |||||||||||||||||| ||||||||||||| |||||||||| ||||| | ||||| |||||  ||||||||||||| ||||||| ||||||| | |||    
T  37206138 ggccggcccgaaagcccgaataaaacgtagggcttgggcctaaaaattgcaacccgattttttttagggctttttagctcggcccgtaaaagcccgtagc 37206039  T
Q  140 tagttagggctagcccgttcgggccacgggcagcctggcagcccgc 185  Q
      |   |||||  ||||| ||||||||||| |||| ||||||||||    
T  37206038 ccgaccgggcttacccgtacgggccacgggtagcccggcagcccgc 37205993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 39 - 132
Target Start/End: Complemental strand, 10642146 - 10642053
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagc 132  Q
    ||||||||||||||||||| |||||| |||||| ||||||| ||||||||||||||||| ||    ||||||||||||||||||||| ||||||    
T  10642146 gggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaattgaagagggctttttagcccggcccgtaaaagc 10642053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 84 - 174
Target Start/End: Original strand, 3296166 - 3296256
Alignment:
Q  84 aattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggagctagttagggctagcccgttcgggccacgggcagcc 174  Q
    ||||| |||||||||| || ||||||||||||||||||||| |||||||| |||||| ||||||||||||| | ||||||  |||||||||    
T  3296166 aattgcagcccgaattgtttcagggctttttagcccggcccaaaaaagcccggagctcgttagggctagcctggtcgggctgcgggcagcc 3296256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 28 - 156
Target Start/End: Complemental strand, 1398473 - 1398344
Alignment:
Q  28 gctgtcaaaatgggccggcccgaaagcccg-cataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccga 126  Q
    ||||||||||||||||||||||||||||||  | ||||||||||| |||||||||| ||| | |||||||||||    |||||||||| ||||||||||     
T  1398473 gctgtcaaaatgggccggcccgaaagcccgaaaaaaaacgtagggcttgggcctaaaaatggcagcccgaatttaaatagggctttttggcccggcccgt 1398374  T
Q  127 aaaagcctggagctagttagggctagcccg 156  Q
    ||||  | | |||  |||||||||||||||    
T  1398373 aaaaatccgaagcccgttagggctagcccg 1398344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 36866108 - 36866213
Alignment:
Q  28 gctgtcaaaatgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaa 127  Q
    |||||||||| ||||||   ||||||| || ||||||||||| ||||||| | ||||| || ||||||||||||| |||||||||||| |||| |||| |    
T  36866108 gctgtcaaaacgggccgaatcgaaagctcgaataaaacgtagagtttgggtcgaataagtgcagcccgaattttttcagggctttttatcccgacccgta 36866207  T
Q  128 aaagcc 133  Q
    ||||||    
T  36866208 aaagcc 36866213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 60 - 133
Target Start/End: Complemental strand, 38986685 - 38986612
Alignment:
Q  60 taaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcc 133  Q
    |||||| ||||| ||||||  || ||||  |||||||||||||| |||||||||||||||||||||||||||||    
T  38986685 taaaacttagggcttgggctcaaaaatttcagcccgaatttttctagggctttttagcccggcccgaaaaagcc 38986612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 133
Target Start/End: Original strand, 36016250 - 36016368
Alignment:
Q  21 aattagggctgtcaaaatgggccggcccgaaag------cccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggcttttt 114  Q
    |||||| |||||||||||||||||| ||| |||      |||| |||||| |||||| ||||||| |||||||||||||| || ||    ||||||||||    
T  36016250 aattagagctgtcaaaatgggccgggccgtaagggccggcccgaataaaatgtagggcttgggccgaataattggagcccaaaattgaagagggcttttt 36016349  T
Q  115 agcccggcccgaaaaagcc 133  Q
    ||||||||||| |||||||    
T  36016350 agcccggcccgtaaaagcc 36016368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 42 - 155
Target Start/End: Complemental strand, 40918004 - 40917891
Alignment:
Q  42 ccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggagcta 141  Q
    |||| ||||||||||| |||||| ||||||| || ||  |  ||| | ||||||||||||| ||| ||||||||||| |||| ||||||||  | ||||     
T  40918004 ccggtccgaaagcccgaataaaatgtagggtctgagctgataaatagcagcccgaattttttcagagctttttagcctggcctgaaaaagctcgaagctc 40917905  T
Q  142 gttagggctagccc 155  Q
    ||||||||||||||    
T  40917904 gttagggctagccc 40917891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 37 - 100
Target Start/End: Original strand, 74980 - 75043
Alignment:
Q  37 atgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaattt 100  Q
    ||||| ||| ||||||||||| ||||||||||||| |||||||||| ||||| |||||| ||||    
T  74980 atgggtcggtccgaaagcccgaataaaacgtagggcttgggcctaaaaattgcagcccgtattt 75043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 42092553 - 42092620
Alignment:
Q  28 gctgtcaaaatgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccg 95  Q
    |||||||||||||  |||| ||||| |||| ||||||||||| |||||||||||| ||||| ||||||    
T  42092553 gctgtcaaaatggatcggctcgaaaacccgaataaaacgtagagtttgggcctaaaaattgcagcccg 42092620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 101
Target Start/End: Original strand, 17085407 - 17085461
Alignment:
Q  47 ccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttt 101  Q
    ||||||||||| |||||| ||||||| |||||| |||||||| ||||||||||||    
T  17085407 ccgaaagcccgaataaaatgtagggtctgggccgaataattgaagcccgaatttt 17085461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 89 - 174
Target Start/End: Complemental strand, 8320564 - 8320479
Alignment:
Q  89 gagcccgaatttttccagggctttttagcccggcccgaaaaagcctggagctagttagggctagcccgttcgggccacgggcagcc 174  Q
    |||||||||||||   |||||||||||||||||||| |||||||  ||  || |||||||||||||||  |||||| |||| ||||    
T  8320564 gagcccgaattttaatagggctttttagcccggccctaaaaagctcggtactcgttagggctagcccgaacgggccgcgggtagcc 8320479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 191
Target Start/End: Original strand, 6453024 - 6453167
Alignment:
Q  49 gaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttt-tccagggctttttagcccggcccgaaaaagcctggagctagttagg 147  Q
    |||||| || |||||| |||||||||| ||| |||||||| ||||||||||||    |||||||||||||||| |||| |||| || | | |  ||||||    
T  6453024 gaaagctcgaataaaatgtagggtttgtgccgaataattgcagcccgaattttgaagagggctttttagcccgacccgtaaaaacccgtaacccgttagg 6453123  T
Q  148 gctagcccgttcgggccacgggcagcctggcagcccgcaaaaaa 191  Q
    |||| ||||| ||  |  ||||| ||| || |||||||||||||    
T  6453124 gctaacccgtccgaactccgggccgccaggaagcccgcaaaaaa 6453167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 133
Target Start/End: Complemental strand, 3436769 - 3436727
Alignment:
Q  91 gcccgaatttttccagggctttttagcccggcccgaaaaagcc 133  Q
    ||||||||||||  |||||||||||||||||| ||||||||||    
T  3436769 gcccgaatttttttagggctttttagcccggctcgaaaaagcc 3436727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 156
Target Start/End: Complemental strand, 28759505 - 28759372
Alignment:
Q  23 ttagggctgtcaaaatgggccggcccgaa-agcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccgg 121  Q
    |||| |||||||||| |||||||||||   |||||| |||||   ||||| |||||||||| |  | |||||||||||||   |||||||||||||||||    
T  28759505 ttagagctgtcaaaacgggccggcccgtttagcccgaataaata-tagggcttgggcctaaaatattgagcccgaattttaatagggctttttagcccgg 28759407  T
Q  122 cccgaaaaagcctggagctagttagggctagcccg 156  Q
    |||  ||||||| ||  |  |||||||||||||||    
T  28759406 cccttaaaagcccggtacccgttagggctagcccg 28759372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 17320426 - 17320495
Alignment:
Q  105 agggctttttagcccggcccgaaaaagcctggagctagttagggctagcccgttcgggccacgggcagcc 174  Q
    |||||||||||||||||||| |||||||| ||  |  |||||||||||||||  |||||| |||| ||||    
T  17320426 agggctttttagcccggccctaaaaagcccggtacccgttagggctagcccgaacgggccgcgggtagcc 17320495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 174
Target Start/End: Original strand, 39479386 - 39479471
Alignment:
Q  89 gagcccgaatttttccagggctttttagcccggcccgaaaaagcctggagctagttagggctagcccgttcgggccacgggcagcc 174  Q
    |||||||||||||   | |||||||||||||||||| |||||||| ||  |  |||||||||||||||  |||||| |||| ||||    
T  39479386 gagcccgaattttaatatggctttttagcccggccctaaaaagcccggtacccgttagggctagcccgaacgggccgcgggtagcc 39479471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 17016523 - 17016567
Alignment:
Q  89 gagcccgaatttttccagggctttttagcccggcccgaaaaagcc 133  Q
    |||||||||||||   |||||||||||||||||||| ||||||||    
T  17016523 gagcccgaattttaatagggctttttagcccggccctaaaaagcc 17016567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 4e-51; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 28 - 174
Target Start/End: Original strand, 32767574 - 32767720
Alignment:
Q  28 gctgtcaaaatgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaa 127  Q
    |||||||||| ||||||||||||||||||| ||||||  ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32767574 gctgtcaaaacgggccggcccgaaagcccgaataaaatatagggcttgggcctaataattgcagcccgaatttttccagggctttttagcccggcccgaa 32767673  T
Q  128 aaagcctggagctagttagggctagcccgttcgggccacgggcagcc 174  Q
    |||||| ||| |  |||| ||||||||||||||||||||||||||||    
T  32767674 aaagcccggaacccgttaaggctagcccgttcgggccacgggcagcc 32767720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 3415332 - 3415234
Alignment:
Q  23 ttagggctgtcaaaatgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccgg 121  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3415332 ttagagctgtcaaaatgggccggcccgaaagcccgaataaaacgtagggcttgggcctaataattggagcccgaatttttccagggctttttagcccgg 3415234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 28 - 149
Target Start/End: Complemental strand, 43286376 - 43286255
Alignment:
Q  28 gctgtcaaaatgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaa 127  Q
    |||||||||| |||| ||||||| |||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  43286376 gctgtcaaaacgggctggcccgagagcccgaataaaacgtagggcttgggcctaataattgcagcccgaatttttccagggctttttagcccggcccgaa 43286277  T
Q  128 aaagcctggagctagttagggc 149  Q
    |||||| |||||  ||||||||    
T  43286276 aaagcccggagcccgttagggc 43286255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 28 - 138
Target Start/End: Complemental strand, 52464210 - 52464100
Alignment:
Q  28 gctgtcaaaatgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaa 127  Q
    |||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||  |||||||||||||| || ||||||||||||||| ||||    
T  52464210 gctgtcaaaacgggccggcccgaaagcccgaataaaacgtagggcttgggcctaataattacagcccgaatttttcaagagctttttagcccggctcgaa 52464111  T
Q  128 aaagcctggag 138  Q
    |||||| ||||    
T  52464110 aaagcccggag 52464100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 39 - 192
Target Start/End: Complemental strand, 20034401 - 20034248
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggag 138  Q
    ||||||||||||||||||| |||||| |||||| ||||||| ||||||||||||||||| ||    ||||||||||||||||||||| |||||||    |    
T  20034401 gggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaattgaagagggctttttagcccggcccgtaaaagcccttgg 20034302  T
Q  139 ctagttagggctagcccgttcgggccacgggcagcctggcagcccgcaaaaaat 192  Q
    |  |||||||||||||||| |||||  ||||| ||| || ||||||||||||||    
T  20034301 cccgttagggctagcccgtccgggctccgggctgcccggaagcccgcaaaaaat 20034248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 39 - 192
Target Start/End: Original strand, 39345835 - 39345989
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttcc-agggctttttagcccggcccgaaaaagcctgga 137  Q
    ||||||||||||||||||| |||||| |||||| ||||||| ||||||||||||||||| |||    ||||||||||||||||||||| |||||||        
T  39345835 gggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaatttgaatagggctttttagcccggcccgtaaaagcccttg 39345934  T
Q  138 gctagttagggctagcccgttcgggccacgggcagcctggcagcccgcaaaaaat 192  Q
    ||  |||||||||||||||| |||||  ||||| ||| || ||||||||||||||    
T  39345935 gcccgttagggctagcccgtccgggctccgggctgcccggaagcccgcaaaaaat 39345989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 37 - 120
Target Start/End: Original strand, 19240771 - 19240854
Alignment:
Q  37 atgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccg 120  Q
    |||| |||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||    
T  19240771 atggaccggcccgaaagcccgaataaaatgtagggtttgggcctaataattgcagcccgaattttttcagggcattttagcccg 19240854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 39 - 186
Target Start/End: Original strand, 44341197 - 44341344
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggag 138  Q
    ||||||| ||||||||||| |||||| |||||| ||||||| |||||||| || ||| ||| ||||||||||||||||||||||||| ||||||| | |     
T  44341197 gggccggtccgaaagcccgaataaaatgtagggcttgggccgaataattgcagtccggattcttccagggctttttagcccggcccgtaaaagcccgtaa 44341296  T
Q  139 ctagttagggctagcccgttcgggccacgggcagcctggcagcccgca 186  Q
    |   || ||||||||||||| |||| | |||||||| |||| ||||||    
T  44341297 ccctttcgggctagcccgtttgggctaagggcagcccggcaacccgca 44341344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 39 - 192
Target Start/End: Original strand, 17543751 - 17543905
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttcc-agggctttttagcccggcccgaaaaagcctgga 137  Q
    ||||||||||||||||||| |||||| |||||| ||||||| ||||||||||||||||| |||    ||||||||||||||||||||| |||||||        
T  17543751 gggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaatttgaagagggctttttagcccggcccgtaaaagcccttg 17543850  T
Q  138 gctagttagggctagcccgttcgggccacgggcagcctggcagcccgcaaaaaat 192  Q
    ||   ||||||||||||||| |||||  ||||| ||| || ||||||||||||||    
T  17543851 gcccattagggctagcccgtccgggctccgggctgcccggaagcccgcaaaaaat 17543905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 39 - 132
Target Start/End: Complemental strand, 1705309 - 1705217
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagc 132  Q
    ||||||||||||||||||| |||||| | ||||| |||||| |||||| | ||||||||||||| |||||||||||||||||||||||||||||    
T  1705309 gggccggcccgaaagcccgaataaaatgcagggtctgggccaaataatagcagcccgaattttt-cagggctttttagcccggcccgaaaaagc 1705217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 39 - 192
Target Start/End: Original strand, 45522504 - 45522657
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggag 138  Q
    ||||||||||||||||||| |||||| |||||| ||||||| ||||||||||||||||| ||    || |||||||||||||||||| |||||||    |    
T  45522504 gggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaattgaagagagctttttagcccggcccgtaaaagcccttgg 45522603  T
Q  139 ctagttagggctagcccgttcgggccacgggcagcctggcagcccgcaaaaaat 192  Q
    |  |||||||||||||||| ||| |  ||||| ||| || ||||||||||||||    
T  45522604 cccgttagggctagcccgtccggacttcgggctgcccggaagcccgcaaaaaat 45522657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 39 - 192
Target Start/End: Original strand, 47295568 - 47295721
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggag 138  Q
    ||||||||||||||||||| |||||| |||||| |||| || ||||||||||||||||| ||    ||||||||||||||||||||| |||||||    |    
T  47295568 gggccggcccgaaagcccgaataaaatgtagggcttggaccgaataattggagcccgaaattgaagagggctttttagcccggcccgtaaaagcccttgg 47295667  T
Q  139 ctagttagggctagcccgttcgggccacgggcagcctggcagcccgcaaaaaat 192  Q
    |  |||||||||||||||| |||||  ||||| ||  || ||||||||||||||    
T  47295668 cccgttagggctagcccgtccgggctccgggctgctcggaagcccgcaaaaaat 47295721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 39 - 174
Target Start/End: Complemental strand, 9455440 - 9455305
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggag 138  Q
    ||||||| ||||||||||| |||||| ||||||  ||| |  |||||||| ||||||||||||| ||||||||||||||  |||||||||||| | | ||    
T  9455440 gggccggtccgaaagcccgaataaaatgtagggactggactgaataattgcagcccgaattttttcagggctttttagctgggcccgaaaaaggccgtag 9455341  T
Q  139 ctagttagggctagcccgttcgggccacgggcagcc 174  Q
    |  ||||||||| ||| |||||||| ||||||||||    
T  9455340 cccgttagggctggccagttcgggctacgggcagcc 9455305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 39 - 133
Target Start/End: Original strand, 27870026 - 27870120
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcc 133  Q
    ||||||||||||||||||| |||||| |||||| ||||||| ||||||||||||||||| ||    ||||||||||||||||||||| |||||||    
T  27870026 gggccggcccgaaagcccgaataaaatgtagggcttgggccaaataattggagcccgaaattgaagagggctttttagcccggcccgtaaaagcc 27870120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 39 - 133
Target Start/End: Original strand, 32594047 - 32594141
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcc 133  Q
    ||||||||||||||||||| |||||| |||||   ||| || |||||||| ||||||||||||| |||||||||||| |||| ||||||||||||    
T  32594047 gggccggcccgaaagcccgaataaaatgtaggacctggaccgaataattgcagcccgaattttttcagggctttttaacccgacccgaaaaagcc 32594141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 36 - 130
Target Start/End: Complemental strand, 51401448 - 51401354
Alignment:
Q  36 aatgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaa 130  Q
    ||||||||||||||  ||||||  |||||| ||||||||||||  || ||||  ||||||||||||||||| |||||||||||||||||||||||    
T  51401448 aatgggccggcccgttagcccgagtaaaacttagggtttgggctcaaaaattccagcccgaatttttccagagctttttagcccggcccgaaaaa 51401354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 43 - 163
Target Start/End: Complemental strand, 54134591 - 54134471
Alignment:
Q  43 cggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggagctag 142  Q
    ||||||||||||||| |||||| |||||| ||||||| |||||||||||||| || ||    ||||||||||||||||||||| |||||||    ||  |    
T  54134591 cggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccaaaattgaagagggctttttagcccggcccgtaaaagcccttggcccg 54134492  T
Q  143 ttagggctagcccgttcgggc 163  Q
    ||||||||||||||| |||||    
T  54134491 ttagggctagcccgtccgggc 54134471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 39 - 133
Target Start/End: Original strand, 951377 - 951471
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcc 133  Q
    ||||||||||||||||||| |||||| ||| || ||||||| ||||| ||||||||||| ||    ||||||||||||||||||||| |||||||    
T  951377 gggccggcccgaaagcccgaataaaatgtaaggcttgggccgaataagtggagcccgaaattgaagagggctttttagcccggcccgtaaaagcc 951471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 49 - 192
Target Start/End: Complemental strand, 2323889 - 2323745
Alignment:
Q  49 gaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaag--cctggagctagttag 146  Q
    ||||||||| |||||| |||||| ||||||| ||||||||||||||||| ||    ||||||||||||||||||||| |||||  ||| | ||  |||||    
T  2323889 gaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaattgaagagggctttttagcccggcccgtaaaagccccttg-gcccgttag 2323791  T
Q  147 ggctagcccgttcgggccacgggcagcctggcagcccgcaaaaaat 192  Q
    |||||||| || |||||  ||||| ||| || ||||||||||||||    
T  2323790 ggctagcctgtccgggctccgggctgcccggaagcccgcaaaaaat 2323745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 37 - 119
Target Start/End: Original strand, 41361259 - 41361341
Alignment:
Q  37 atgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagccc 119  Q
    ||||||||||||||||||||| |||||||| | || |||||||||| ||||| |||||| |||||  ||||||||||||||||    
T  41361259 atgggccggcccgaaagcccgaataaaacgcatggcttgggcctaaaaattgcagcccgtattttagcagggctttttagccc 41361341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 39 - 156
Target Start/End: Original strand, 34030301 - 34030417
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggag 138  Q
    |||||| |||||||||||| | ||||||||||| |||||||||| ||| | |||| ||||||   ||||||||||| |||||||||| ||||||| | ||    
T  34030301 gggccgacccgaaagcccgaa-aaaacgtagggcttgggcctaaaaatggcagcctgaatttaaacagggctttttggcccggcccgtaaaagcccgaag 34030399  T
Q  139 ctagttagggctagcccg 156  Q
    |   ||||||||||||||    
T  34030400 cccattagggctagcccg 34030417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 37 - 125
Target Start/End: Complemental strand, 1325033 - 1324945
Alignment:
Q  37 atgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccg 125  Q
    |||| |||| ||||||| ||| |||||| ||| || ||||||  || |||| ||||||||||||||||||||||||||||||| |||||    
T  1325033 atggaccggaccgaaagtccgaataaaatgtaaggcttgggctgaaaaattagagcccgaatttttccagggctttttagcccagcccg 1324945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 150
Target Start/End: Complemental strand, 34859155 - 34859052
Alignment:
Q  47 ccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggagctagttag 146  Q
    |||||| |||| |||||| | ||||  |||||| |||||| | |||| |||||||| ||||||||||||||||||||| |||||||| | |||  |||||    
T  34859155 ccgaaaacccgaataaaatgcagggcctgggccgaataatagaagcctgaattttttcagggctttttagcccggcccaaaaaagcccgtagcccgttag 34859056  T
Q  147 ggct 150  Q
    ||||    
T  34859055 ggct 34859052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 54787623 - 54787555
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagg 107  Q
    |||||||||||||| |||  |||||||||| ||||||| |||  |||||| ||||||||||||| ||||    
T  54787623 gggccggcccgaaaaccctaataaaacgtatggtttggaccttttaattgcagcccgaattttttcagg 54787555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 424
Target Start/End: Complemental strand, 3414999 - 3414964
Alignment:
Q  389 cgcgattccgattatggcagctgaaatcacacaggt 424  Q
    ||||||||||||| ||||||||||||||||||||||    
T  3414999 cgcgattccgattctggcagctgaaatcacacaggt 3414964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 133
Target Start/End: Original strand, 16029785 - 16029828
Alignment:
Q  90 agcccgaatttttccagggctttttagcccggcccgaaaaagcc 133  Q
    |||| |||||||| ||||||||||||||||||||| ||||||||    
T  16029785 agcctgaattttttcagggctttttagcccggcccaaaaaagcc 16029828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 156
Target Start/End: Complemental strand, 6643392 - 6643303
Alignment:
Q  67 tagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggagctagttagggctagcccg 156  Q
    |||||||||||||||| |  | |||||||||||||   |||| |||||||||||||||  ||||||| ||  |  |||||||||||||||    
T  6643392 tagggtttgggcctaaaatattgagcccgaattttaatagggttttttagcccggcccttaaaagcccggtacccgttagggctagcccg 6643303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 156
Target Start/End: Original strand, 15194500 - 15194589
Alignment:
Q  67 tagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggagctagttagggctagcccg 156  Q
    ||||| |||||||||| |  | |||||||||||||   ||||||||||||||||||||  ||||||| ||  |  |||||||||||||||    
T  15194500 tagggcttgggcctaaaatattgagcccgaattttaatagggctttttagcccggcccttaaaagcccggtacccgttagggctagcccg 15194589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 156
Target Start/End: Original strand, 50097416 - 50097505
Alignment:
Q  67 tagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggagctagttagggctagcccg 156  Q
    |||||||||||||||| |  | ||| |||||||||   ||||||||||||||||||||  ||||| ||||  |  |||||||||||||||    
T  50097416 tagggtttgggcctaaaatattgagtccgaattttaaaagggctttttagcccggcccttaaaagtctggtacccgttagggctagcccg 50097505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 56114254 - 56114185
Alignment:
Q  105 agggctttttagcccggcccgaaaaagcctggagctagttagggctagcccgttcgggccacgggcagcc 174  Q
    ||||||||||||||||| || |||||||| ||  |  |||||||||||||||  ||||||||||| ||||    
T  56114254 agggctttttagcccggtcctaaaaagcccggtacccgttagggctagcccgaacgggccacgggtagcc 56114185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 156
Target Start/End: Complemental strand, 56264502 - 56264413
Alignment:
Q  67 tagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggagctagttagggctagcccg 156  Q
    ||||| |||||||||| |  | |||||||||||||   ||||||||||||||||||||  ||||||| ||  |  |||||||||||||||    
T  56264502 tagggcttgggcctaaaatattgagcccgaattttaatagggctttttagcccggcccttaaaagcccggtacccgttagggctagcccg 56264413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 16623505 - 16623549
Alignment:
Q  89 gagcccgaatttttccagggctttttagcccggcccgaaaaagcc 133  Q
    |||||||||||||   |||||||||||||||||||| ||||||||    
T  16623505 gagcccgaattttaatagggctttttagcccggccctaaaaagcc 16623549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 129
Target Start/End: Original strand, 50004724 - 50004829
Alignment:
Q  23 ttagggctgtcaaaatgggccggcccgaaagcccgcataaaacgtagggtttgggcc-taataattggagcccgaatttttccagggctttttagcccgg 121  Q
    |||| ||||||||||| |||||||||| ||||| | || ||| ||||||  ||||||  || ||| | ||||||||||||  ||||||||||||||| |     
T  50004724 ttagagctgtcaaaataggccggcccggaagcctgaattaaatgtagggcctgggccgaaaaaatagcagcccgaatttt--cagggctttttagcctgc 50004821  T
Q  122 cccgaaaa 129  Q
    ||||||||    
T  50004822 cccgaaaa 50004829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 2e-50; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 37 - 174
Target Start/End: Complemental strand, 15614261 - 15614124
Alignment:
Q  37 atgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctgg 136  Q
    ||||||||||||||||||||| ||||||  ||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||    
T  15614261 atgggccggcccgaaagcccgaataaaatatagggcttgggcctaataattgcagcccgaatttttccagggctttttagcccgccccgaaaaagcccgg 15614162  T
Q  137 agctagttagggctagcccgttcgggccacgggcagcc 174  Q
    |||  |||||||||||||||||||||||||||||||||    
T  15614161 agcctgttagggctagcccgttcgggccacgggcagcc 15614124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 23 - 130
Target Start/End: Original strand, 5271059 - 5271166
Alignment:
Q  23 ttagggctgtcaaaatgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggc 122  Q
    |||| |||||||||| ||||||||||||||||||| |||||| | |||| ||||||| || |||||||||||||||||||||||| ||||||||||||||    
T  5271059 ttagagctgtcaaaacgggccggcccgaaagcccgaataaaatgcagggcttgggccgaaaaattggagcccgaatttttccaggactttttagcccggc 5271158  T
Q  123 ccgaaaaa 130  Q
    ||| ||||    
T  5271159 ccgcaaaa 5271166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 39 - 192
Target Start/End: Complemental strand, 15560676 - 15560523
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggag 138  Q
    ||||||||||||||||||| |||||| |||||| ||||||| ||||||||||||||||| ||    ||||||||||||||||||||| |||||||    |    
T  15560676 gggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaattgaagagggctttttagcccggcccgtaaaagcccttgg 15560577  T
Q  139 ctagttagggctagcccgttcgggccacgggcagcctggcagcccgcaaaaaat 192  Q
    |  |||||||||||||||| |||||  ||||| ||| || ||||||||||||||    
T  15560576 cccgttagggctagcccgtccgggctccgggctgcccggaagcccgcaaaaaat 15560523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 40 - 130
Target Start/End: Original strand, 9470828 - 9470918
Alignment:
Q  40 ggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaa 130  Q
    |||||||||||||||||| |||||| |||||||||||||| |  ||| | ||||||||||||| |||||||||||||||||||||||||||    
T  9470828 ggccggcccgaaagcccgaataaaatgtagggtttgggccgataaatagcagcccgaattttttcagggctttttagcccggcccgaaaaa 9470918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 39 - 192
Target Start/End: Complemental strand, 29201516 - 29201363
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggag 138  Q
    ||||||| ||||||||||| |||||| |||||| ||||||| ||||||||||||||||| ||    ||||||||||||||||||||| |||||||    |    
T  29201516 gggccgggccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaattgaagagggctttttagcccggcccgtaaaagcccttgg 29201417  T
Q  139 ctagttagggctagcccgttcgggccacgggcagcctggcagcccgcaaaaaat 192  Q
    |  ||||||||||| |||| |||||  ||||| ||| || ||||||||||||||    
T  29201416 cccgttagggctagaccgtccgggctccgggctgcccggaagcccgcaaaaaat 29201363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 39 - 192
Target Start/End: Complemental strand, 40000896 - 40000744
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggag 138  Q
    ||||||||||||||||||| |||||| |||||| ||||||| ||||||||| ||||||| ||    ||||||||||||||||||||| |||||||    |    
T  40000896 gggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattgg-gcccgaaattgaagagggctttttagcccggcccgtaaaagcccttgg 40000798  T
Q  139 ctagttagggctagcccgttcgggccacgggcagcctggcagcccgcaaaaaat 192  Q
    |  |||||||||||||||| |||||  ||||| ||| || ||||||||||||||    
T  40000797 cccgttagggctagcccgtccgggctccgggctgcccggaagcccgcaaaaaat 40000744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 28 - 184
Target Start/End: Complemental strand, 38838159 - 38838003
Alignment:
Q  28 gctgtcaaaatgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaa 127  Q
    |||||||||| ||||||||||||||||||| ||||||||||||| |||||||||| ||||| || ||||||||||  | ||||| |||||||| |||  |    
T  38838159 gctgtcaaaacgggccggcccgaaagcccgaataaaacgtagggcttgggcctaaaaattgcagtccgaatttttttaaggcttgttagcccgacccata 38838060  T
Q  128 aaagcctggagctagttagggctagcccgttcgggccacgggcagcctggcagcccg 184  Q
    |||||| | |||  |   |||||  ||||| ||||||||||| |||| |||||||||    
T  38838059 aaagcccgtagcccgaccgggcttacccgtacgggccacgggtagcccggcagcccg 38838003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 39 - 133
Target Start/End: Complemental strand, 20922870 - 20922776
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcc 133  Q
    ||||||| ||||||||||| |||||| | || || || ||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  20922870 gggccggtccgaaagcccgaataaaatgcagagtctgtgccgaataattgcagcccgaattttttcagggctttttagcccggcccgaaaaagcc 20922776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 39 - 133
Target Start/End: Original strand, 21747420 - 21747514
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcc 133  Q
    ||||||||||||||||||| |||||| |||||| ||||||| ||||||||||||||||| ||    ||||||||||||||||||||| |||||||    
T  21747420 gggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaattgaagagggctttttagcccggcccgtaaaagcc 21747514  T

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Target: chr2; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 39 - 133
Target Start/End: Original strand, 25096307 - 25096401
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcc 133  Q
    ||||||||||||||||||| |||||| |||||| ||||||| ||||||||||||||||| ||    ||||||||||||||||||||| |||||||    
T  25096307 gggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaattgaagagggctttttagcccggcccgtaaaagcc 25096401  T

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Target: chr2; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 39 - 129
Target Start/End: Complemental strand, 42730824 - 42730734
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaa 129  Q
    ||||||| ||||||||||| |||||| | |||| ||||||| |||||| | ||||||||||||| ||||||||||||||||| ||||||||    
T  42730824 gggccgggccgaaagcccgaataaaatgcagggcttgggccgaataatagcagcccgaattttttcagggctttttagcccgacccgaaaa 42730734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 17071325 - 17071256
Alignment:
Q  37 atgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccag 106  Q
    ||||||||||||||||||||| |||||| ||||||||||||| ||||||||  |||||||||||||||||    
T  17071325 atgggccggcccgaaagcccgaataaaatgtagggtttgggcttaataatttcagcccgaatttttccag 17071256  T

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Target: chr2; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 40 - 133
Target Start/End: Original strand, 17920791 - 17920884
Alignment:
Q  40 ggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcc 133  Q
    |||||||||||||||| | |||||| |||||||||||||| |  ||| | |||| ||||||||  |||||||||||||||||||||||||||||    
T  17920791 ggccggcccgaaagcctgaataaaatgtagggtttgggccgataaatagcagcctgaatttttttagggctttttagcccggcccgaaaaagcc 17920884  T

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Target: chr2; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 17088323 - 17088255
Alignment:
Q  38 tgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccag 106  Q
    |||||||||||||||||||| |||||| ||||||||||||| ||||||||  |||||||||||||||||    
T  17088323 tgggccggcccgaaagcccgaataaaatgtagggtttgggcttaataattttagcccgaatttttccag 17088255  T

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Target: chr2; HSP #15
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 48 - 192
Target Start/End: Complemental strand, 40861136 - 40860992
Alignment:
Q  48 cgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggagctagttagg 147  Q
    |||||||||| |||||| |||||| ||| ||| ||||||||||||||||| ||    |||||||||||||| |||||| |||||||    ||  ||||||    
T  40861136 cgaaagcccgaataaaatgtagggcttgagccgaataattggagcccgaaattgaagagggctttttagcctggcccgtaaaagcccttggcccgttagg 40861037  T
Q  148 gctagcccgttcgggccacgggcagcctggcagcccgcaaaaaat 192  Q
    |||||||||| |||||  ||||| ||| || ||||||||||||||    
T  40861036 gctagcccgtccgggctccgggctgcccggaagcccgcaaaaaat 40860992  T

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Target: chr2; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 17077395 - 17077328
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccag 106  Q
    ||||||||||||||||||| |||||| ||||||||||||| ||||||||  |||||||||||||||||    
T  17077395 gggccggcccgaaagcccgaataaaatgtagggtttgggcttaataatttcagcccgaatttttccag 17077328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 37 - 174
Target Start/End: Original strand, 4564919 - 4565055
Alignment:
Q  37 atgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctgg 136  Q
    |||| |||||| ||| || || |||||| |||||| ||| |||||| ||||| |||||||| |||||||| | |||||| |||  |||||||||||| |     
T  4564919 atggaccggcctgaacgctcgaataaaatgtagggcttgtgcctaaaaattgcagcccgaaattttccagag-tttttaacccaacccgaaaaagcccgt 4565017  T
Q  137 agctagttagggctagcccgttcgggccacgggcagcc 174  Q
    |||  || ||||||| |||||| |||||||||||||||    
T  4565018 agcccgtcagggctaacccgtttgggccacgggcagcc 4565055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 39 - 130
Target Start/End: Complemental strand, 26556593 - 26556501
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttt-tccagggctttttagcccggcccgaaaaa 130  Q
    ||||||||||||||| |||  ||||| |||||| ||||||| |||||||| ||| ||||||||    ||||||||||||||||||||| ||||    
T  26556593 gggccggcccgaaagtccgattaaaatgtagggcttgggccgaataattgcagctcgaattttgaagagggctttttagcccggcccgtaaaa 26556501  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 156
Target Start/End: Complemental strand, 1002596 - 1002507
Alignment:
Q  67 tagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggagctagttagggctagcccg 156  Q
    |||||||||||||||| |  | |||| ||||||||   ||||||||||||||||||||  ||||||| ||  |  |||||||||||||||    
T  1002596 tagggtttgggcctaaaatattgagctcgaattttaatagggctttttagcccggcccataaaagcccggtacccgttagggctagcccg 1002507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 186
Target Start/End: Complemental strand, 10822347 - 10822250
Alignment:
Q  89 gagcccgaatttttccagggctttttagcccggcccgaaaaagcctggagctagttagggctagcccgttcgggccacgggcagcctggcagcccgca 186  Q
    |||||||||||||   |||||||||||||||||||| ||||| || ||  |  |||||||||||||||  |||||| |||| ||| ||  ||||||||    
T  10822347 gagcccgaattttaatagggctttttagcccggccctaaaaaacccggtacccgttagggctagcccgaacgggccgcgggtagcttgttagcccgca 10822250  T

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Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 156
Target Start/End: Original strand, 27495903 - 27495992
Alignment:
Q  67 tagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggagctagttagggctagcccg 156  Q
    ||||| |||||||||| |  | |||||||||||||   ||||||||||||||||||||  ||||||| ||  |  |||||||||||||||    
T  27495903 tagggcttgggcctaaaatattgagcccgaattttaatagggctttttagcccggcccttaaaagcccggtacccgttagggctagcccg 27495992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 174
Target Start/End: Complemental strand, 25460008 - 25459928
Alignment:
Q  94 cgaatttttccagggctttttagcccggcccgaaaaagcctggagctagttagggctagcccgttcgggccacgggcagcc 174  Q
    ||||||||| ||| |||||||||||||  | ||||||||||| | |  ||| ||||||||||| |||||| | ||||||||    
T  25460008 cgaattttttcagagctttttagcccgatctgaaaaagcctgcaacccgtttgggctagcccgctcgggctaagggcagcc 25459928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 3e-49; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 37 - 276
Target Start/End: Complemental strand, 6888829 - 6888603
Alignment:
Q  37 atgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctgg 136  Q
    ||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||    
T  6888829 atgggccggcccgaaagcccgcataaaatatagggcttgggcctaataattggagcccgaatttttccagggctttttagcccggcccggaaaagcccgg 6888730  T
Q  137 agctagttagggctagcccgttcgggccacgggcagcctggcagcccgcaaaaaattaagatgggtca-nnnnnnnnnnnnnnggtgtggtgtctgctgg 235  Q
                  |||||||||||||||||||||||| | |||||||||||||||||| ||||||||                ||||||||||||||||    
T  6888729 --------------agcccgttcgggccacgggcagcccgacagcccgcaaaaaattaaaatgggtcatttttttttttttttcgtgtggtgtctgctgg 6888644  T
Q  236 gcctggatattagggatctggcccaaattaaaataacccta 276  Q
    |||||||||||||||||| |||||||||||||| |||||||    
T  6888643 gcctggatattagggatccggcccaaattaaaaaaacccta 6888603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 37 - 197
Target Start/End: Complemental strand, 42854398 - 42854244
Alignment:
Q  37 atgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctgg 136  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||  |||||||| ||    
T  42854398 atgggccagcccgaaagcccgcataaaacgtagggcttgggcctaataattggagcccgaattttttcaaggctttttagcccggcctaaaaaagcccgg 42854299  T
Q  137 agctagttagggctagcccgttcgggccacgggcagcctggcagcccgcaaaaaattaaga 197  Q
    ||   |||||| |||||||||||||||||||||      ||||||||||||||||||||||    
T  42854298 agtccgttaggactagcccgttcgggccacggg------ggcagcccgcaaaaaattaaga 42854244  T

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Target: chr3; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 28 - 139
Target Start/End: Original strand, 27969464 - 27969575
Alignment:
Q  28 gctgtcaaaatgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaa 127  Q
    ||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  27969464 gctgtcaaaatggaccgacccgaaagcccgcataaaacgtagggcttgggcctaataattggagcccgaatttttcccgggctttttagcccggaccgaa 27969563  T
Q  128 aaagcctggagc 139  Q
    |||||| |||||    
T  27969564 aaagcccggagc 27969575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 28 - 139
Target Start/End: Original strand, 33982983 - 33983094
Alignment:
Q  28 gctgtcaaaatgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaa 127  Q
    |||||||||||||||||||||||||||||  |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  33982983 gctgtcaaaatgggccggcccgaaagcccaaataaaatgtagggcttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgga 33983082  T
Q  128 aaagcctggagc 139  Q
    |||||| |||||    
T  33983083 aaagcccggagc 33983094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 39 - 192
Target Start/End: Complemental strand, 21075991 - 21075838
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggag 138  Q
    ||||||||||||||||||| |||||| |||||| ||||||| ||||||||||||||||| ||    ||||||||||||||||||||| |||||||    |    
T  21075991 gggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaattgaagagggctttttagcccggcccgtaaaagcccttgg 21075892  T
Q  139 ctagttagggctagcccgttcgggccacgggcagcctggcagcccgcaaaaaat 192  Q
    |  |||||||||||||||| |||||  ||||| ||| || ||||||||||||||    
T  21075891 cccgttagggctagcccgtccgggcttcgggctgcccggaagcccgcaaaaaat 21075838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 37 - 132
Target Start/End: Original strand, 19975781 - 19975876
Alignment:
Q  37 atgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagc 132  Q
    |||||||||||  |||||||| |||||| |||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  19975781 atgggccggccgaaaagcccgaataaaatgtagggcttgggtctaataattgcagcccgaatttttccagggctttttagcccggcccgtaaaagc 19975876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 39 - 192
Target Start/End: Complemental strand, 43746387 - 43746233
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttcc-agggctttttagcccggcccgaaaaagcctgga 137  Q
    ||||||||||||||||||| |||||| |||||| ||||||| ||||||||||||||||| |||    ||||||||||||||||||||| |||||||        
T  43746387 gggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaatttgaagagggctttttagcccggcccgtaaaagcccttg 43746288  T
Q  138 gctagttagggctagcccgttcgggccacgggcagcctggcagcccgcaaaaaat 192  Q
    ||  |||||||||||||||| |||||  ||||| ||| || ||||||||||||||    
T  43746287 gcccgttagggctagcccgtccgggctccgggctgcccggaagcccgcaaaaaat 43746233  T

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Target: chr3; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 39 - 192
Target Start/End: Original strand, 46311861 - 46312014
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggag 138  Q
    ||||||||||||||||||| |||||| |||||| ||||||| |||||||||||||| || ||    ||||||||||||||||||||| |||||||    |    
T  46311861 gggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccaaaattgaagagggctttttagcccggcccgtaaaagcccttgg 46311960  T
Q  139 ctagttagggctagcccgttcgggccacgggcagcctggcagcccgcaaaaaat 192  Q
    |  |||||||||||||||| |||||  ||||| ||| || ||||||||||||||    
T  46311961 cccgttagggctagcccgtccgggcttcgggctgcccggaagcccgcaaaaaat 46312014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 42 - 192
Target Start/End: Original strand, 27877532 - 27877682
Alignment:
Q  42 ccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggagcta 141  Q
    |||| ||||||||||| |||||| |||||| ||||||| ||||||||||||||||| ||    ||||||||||||||||||||| |||||||    ||      
T  27877532 ccggtccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaattgaagagggctttttagcccggcccgtaaaagcccttggccc 27877631  T
Q  142 gttagggctagcccgttcgggccacgggcagcctggcagcccgcaaaaaat 192  Q
    |||||||||||||||| |||||  ||||| ||| || ||||||||||||||    
T  27877632 gttagggctagcccgtccgggctccgggctgcccggaagcccgcaaaaaat 27877682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 39 - 192
Target Start/End: Original strand, 46219100 - 46219254
Alignment:
Q  39 gggccggcccgaaa-gcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctgga 137  Q
    |||||||||||||| ||||| |||||| |||||| ||||||| ||||||||||||||||| ||    |||||||||||||| |||||| |||||||        
T  46219100 gggccggcccgaaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaattgaagagggctttttagccgggcccgtaaaagcccttg 46219199  T
Q  138 gctagttagggctagcccgttcgggccacgggcagcctggcagcccgcaaaaaat 192  Q
    ||  |||||||||||||||| || ||  ||||| ||| || ||||||||||||||    
T  46219200 gcccgttagggctagcccgtccgagctccgggctgcccggaagcccgcaaaaaat 46219254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 23 - 120
Target Start/End: Original strand, 24310788 - 24310885
Alignment:
Q  23 ttagggctgtcaaaatgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccg 120  Q
    |||| |||||||||| |||||||||||||| |||| |||||||||||||||| | ||||| ||||| |||||||||||||  |||  |||||||||||    
T  24310788 ttagagctgtcaaaacgggccggcccgaaaacccgaataaaacgtagggtttagacctaaaaattgcagcccgaatttttttaggattttttagcccg 24310885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 37 - 133
Target Start/End: Original strand, 43735985 - 43736080
Alignment:
Q  37 atgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcc 133  Q
    ||||||| ||||||||||||| |||||||| ||||  |||||| || ||||||||||| || ||||| ||||||||||||||||||||| |||||||    
T  43735985 atgggccagcccgaaagcccgaataaaacgcagggcctgggccgaaaaattggagccc-aaattttctagggctttttagcccggcccgtaaaagcc 43736080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 23 - 184
Target Start/End: Original strand, 21389730 - 21389891
Alignment:
Q  23 ttagggctgtcaaaatgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggc 122  Q
    |||| |||||||||| |||||||| |||||||| | | |||| |||||| |||||||||| ||| | ||||| |||||    |||| ||||| |||| ||    
T  21389730 ttagagctgtcaaaacgggccggctcgaaagcctgaaaaaaatgtagggcttgggcctaaaaatggcagcccaaatttaaatagggttttttggcccagc 21389829  T
Q  123 ccgaaaaagcctggagctagttagggctagcccgttcgggccacgggcagcctggcagcccg 184  Q
    ||| ||||||| | |||  |||||||||||||||| ||||| ||||| |||| | |||||||    
T  21389830 ccgtaaaagcccgaagcccgttagggctagcccgtgcgggctacgggtagcccgccagcccg 21389891  T

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Target: chr3; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 345 - 426
Target Start/End: Original strand, 33983314 - 33983390
Alignment:
Q  345 cacgcgattccgattccgcgattccattcatcaagctcacgccgcgcgattccgattatggcagctgaaatcacacaggttc 426  Q
    ||||||||||||||||||||||||   |||||||||||||||     |||||||||||||| ||||||||||||||||||||    
T  33983314 cacgcgattccgattccgcgattcgtatcatcaagctcacgc-----gattccgattatggaagctgaaatcacacaggttc 33983390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 345 - 426
Target Start/End: Complemental strand, 42853969 - 42853893
Alignment:
Q  345 cacgcgattccgattccgcgattccattcatcaagctcacgccgcgcgattccgattatggcagctgaaatcacacaggttc 426  Q
    |||||||||||||||||||||||||  |||||||||||| ||     |||||||||| ||||||||||||||||||||||||    
T  42853969 cacgcgattccgattccgcgattccgatcatcaagctcaggc-----gattccgattctggcagctgaaatcacacaggttc 42853893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 37 - 125
Target Start/End: Original strand, 2869006 - 2869094
Alignment:
Q  37 atgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccg 125  Q
    |||||| |||||||||||||| ||||||||||| | |||||||| | ||||| ||||||||||| |  ||||||||||| |||||||||    
T  2869006 atgggctggcccgaaagcccgaataaaacgtagagcttgggcctgaaaattgcagcccgaatttctttagggctttttaacccggcccg 2869094  T

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Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 242 - 349
Target Start/End: Original strand, 27969661 - 27969760
Alignment:
Q  242 atattagggatctggcccaaattaaaataaccctaactcaactcacgtatgtgacatcagcggcctcactcacagtcacacaccgtcaaactcttttctt 341  Q
    |||||||||||| |||||||||| ||||||||||     ||||||||||||||||||||   ||||||||| |  ||||||||  ||| |||||||||||    
T  27969661 atattagggatccggcccaaattgaaataaccct-----aactcacgtatgtgacatca---gcctcactctcgctcacacacgatcacactcttttctt 27969752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 345 - 426
Target Start/End: Original strand, 27969809 - 27969885
Alignment:
Q  345 cacgcgattccgattccgcgattccattcatcaagctcacgccgcgcgattccgattatggcagctgaaatcacacaggttc 426  Q
    |||||||||||||||| ||||||||  ||||||||||||     |||||||| |||| ||||||||||||||||||||||||    
T  27969809 cacgcgattccgattctgcgattccgatcatcaagctca-----cgcgattctgattctggcagctgaaatcacacaggttc 27969885  T

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Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 151
Target Start/End: Complemental strand, 50738046 - 50737934
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggag 138  Q
    ||||| ||||||| | ||| |||||| ||||||  |||||| |  ||| | || |||||||||| ||||| |||||||||||||||||||||||| | ||    
T  50738046 gggccagcccgaatgtccgaataaaatgtagggcctgggccgataaatagcagtccgaattttttcagggttttttagcccggcccgaaaaagcccgaag 50737947  T
Q  139 ctagttagggcta 151  Q
    || ||||||||||    
T  50737946 ctcgttagggcta 50737934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 151
Target Start/End: Original strand, 50774808 - 50774920
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggag 138  Q
    ||||| ||||||| | ||| |||||| ||||||  |||||| |  ||| | || |||||||||| ||||| |||||||||||||||||||||||| | ||    
T  50774808 gggccagcccgaatgtccgaataaaatgtagggcctgggccgataaatagcagtccgaattttttcagggttttttagcccggcccgaaaaagcccgaag 50774907  T
Q  139 ctagttagggcta 151  Q
    || ||||||||||    
T  50774908 ctcgttagggcta 50774920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Complemental strand, 6888400 - 6888349
Alignment:
Q  375 tcaagctcacgccgcgcgattccgattatggcagctgaaatcacacaggttc 426  Q
    |||||||||| ||| |||||||||||| ||||||||||||||||||||||||    
T  6888400 tcaagctcacaccgtgcgattccgattctggcagctgaaatcacacaggttc 6888349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 20510582 - 20510639
Alignment:
Q  37 atgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagccc 94  Q
    |||||||||| |||||||||  |||||||| ||||||||||||||| ||||| |||||    
T  20510582 atgggccggctcgaaagcccaaataaaacgcagggtttgggcctaaaaattgcagccc 20510639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 324 - 391
Target Start/End: Complemental strand, 6888492 - 6888425
Alignment:
Q  324 ccgtcaaactcttttcttctccacgc-----gattccgattccgcgattccattcatcaagctcacgccgcgc 391  Q
    ||||||||||||||||||||||||||     |||||||||||     ||||||||||||||||||||||||||    
T  6888492 ccgtcaaactcttttcttctccacgccacgcgattccgattc-----ttccattcatcaagctcacgccgcgc 6888425  T

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Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 302
Target Start/End: Complemental strand, 42854194 - 42854139
Alignment:
Q  242 atattagggatctggcccaaattaaaataaccctaactcaactcacgtatgtgacatcagc 302  Q
    |||||||||||| |||||||||| ||||||||||||     ||||||||||||||||||||    
T  42854194 atattagggatccggcccaaattgaaataaccctaa-----ctcacgtatgtgacatcagc 42854139  T

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Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 156
Target Start/End: Complemental strand, 32774515 - 32774448
Alignment:
Q  89 gagcccgaatttttccagggctttttagcccggcccgaaaaagcctggagctagttagggctagcccg 156  Q
    |||||||||||||   |||||||||||||||||||| |||||||| ||  |  |||||||||||||||    
T  32774515 gagcccgaattttaatagggctttttagcccggccctaaaaagcccggtacccgttagggctagcccg 32774448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 368
Target Start/End: Original strand, 33983237 - 33983288
Alignment:
Q  317 tcacacaccgtcaaactcttttcttctccacgcgattccgattccgcgattc 368  Q
    |||||||| |||| ||||||||||||||||||||||||  ||||| ||||||    
T  33983237 tcacacacggtcacactcttttcttctccacgcgattcacattccacgattc 33983288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 156
Target Start/End: Complemental strand, 54313419 - 54313352
Alignment:
Q  89 gagcccgaatttttccagggctttttagcccggcccgaaaaagcctggagctagttagggctagcccg 156  Q
    |||||||||||||   |||||||||||||||||||| |||||||| ||  |  |||||||||||||||    
T  54313419 gagcccgaattttaatagggctttttagcccggccctaaaaagcccggtacccgttagggctagcccg 54313352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 156
Target Start/End: Complemental strand, 7910254 - 7910165
Alignment:
Q  67 tagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggagctagttagggctagcccg 156  Q
    ||||| |||||||||| |  | |||||||||||||   ||||||||||||||||||||  ||||||| ||  |  |||||||||||||||    
T  7910254 tagggcttgggcctaaaatattgagcccgaattttaatagggctttttagcccggcccttaaaagcccggtacccgttagggctagcccg 7910165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 156
Target Start/End: Original strand, 26823039 - 26823128
Alignment:
Q  67 tagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggagctagttagggctagcccg 156  Q
    ||||||||||| |||| |  | |||||||||||||   ||||||||||||||||||||  ||||||| ||  |  |||||||||||||||    
T  26823039 tagggtttgggtctaaaatattgagcccgaattttaatagggctttttagcccggcccttaaaagcccggtacccgttagggctagcccg 26823128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 156
Target Start/End: Original strand, 43087990 - 43088079
Alignment:
Q  67 tagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggagctagttagggctagcccg 156  Q
    |||||||||||||||| |  | |||||| ||||||   ||||||||||||||||||||  ||||||| ||  |  |||||||||||||||    
T  43087990 tagggtttgggcctaaaatattgagcccaaattttaatagggctttttagcccggcccttaaaagcccggtacccgttagggctagcccg 43088079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 3995071 - 3995115
Alignment:
Q  89 gagcccgaatttttccagggctttttagcccggcccgaaaaagcc 133  Q
    |||||||||||||   |||||||||||||||||||| ||||||||    
T  3995071 gagcccgaattttaatagggctttttagcccggccctaaaaagcc 3995115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 2e-44; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 28 - 139
Target Start/End: Complemental strand, 47381594 - 47381483
Alignment:
Q  28 gctgtcaaaatgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaa 127  Q
    |||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  47381594 gctgtcaaaatgggccggcccgaaaatccgcataaaacgtagggcttgggcctaataattggagcccgaatttttccagggctttttagcccggcccaaa 47381495  T
Q  128 aaagcctggagc 139  Q
    |||||| |||||    
T  47381494 aaagcccggagc 47381483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 33604547 - 33604652
Alignment:
Q  28 gctgtcaaaatgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaa 127  Q
    ||||||||||  |||||||||||||| |||  |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  33604547 gctgtcaaaacaggccggcccgaaagtccgagtaaaacgtagggcttgggcctaataattgtagcccgaatttttccagggctttttagcccgacccgaa 33604646  T
Q  128 aaagcc 133  Q
    ||||||    
T  33604647 aaagcc 33604652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 37 - 133
Target Start/End: Original strand, 7505238 - 7505334
Alignment:
Q  37 atgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcc 133  Q
    ||||||||||||||||||| | |||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  7505238 atgggccggcccgaaagcctgaataaaatgtagggcttgggcctaataattgcagcccgaatttttccagggctttttagcccggcccgtaaaagcc 7505334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 39 - 192
Target Start/End: Original strand, 23025165 - 23025318
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggag 138  Q
    ||||||||||||||||||| |||||| |||||| ||||||| ||||||||||||||||| ||    ||||||||||||||||||||| |||||||   ||    
T  23025165 gggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaattgaagagggctttttagcccggcccgtaaaagcccttag 23025264  T
Q  139 ctagttagggctagcccgttcgggccacgggcagcctggcagcccgcaaaaaat 192  Q
    |  |||||||||||||||| |||||  ||||| ||| || ||||||||||||||    
T  23025265 cccgttagggctagcccgtccgggctccgggctgcccggaagcccgcaaaaaat 23025318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 22 - 192
Target Start/End: Original strand, 10993172 - 10993343
Alignment:
Q  22 attagggctgtcaaaatgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttcc-agggctttttagcccg 120  Q
    ||||| |||||||||||||||||||||||||||||| |||||| |||||| ||||||| |||||||||||| |||| |||    ||||||||||||||||    
T  10993172 attagagctgtcaaaatgggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagctcgaaatttgaagagggctttttagcccg 10993271  T
Q  121 gcccgaaaaagcctggagctagttagggctagcccgttcgggccacgggcagcctggcagcccgcaaaaaat 192  Q
    ||||| |||||||    ||   ||||||||||||||| |||||  ||||| ||| || ||||||||||||||    
T  10993272 gcccgtaaaagcccttggcccattagggctagcccgtccgggctccgggctgcccggaagcccgcaaaaaat 10993343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 37 - 132
Target Start/End: Complemental strand, 31272224 - 31272129
Alignment:
Q  37 atgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagc 132  Q
    |||||||| ||| |||||||| |||||| |||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||    
T  31272224 atgggccgacccaaaagcccgaataaaatgtagggcttgggcctaataattgcagcacgaatttttccagggctttttagcccggcccgtaaaagc 31272129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 39 - 190
Target Start/End: Original strand, 1873639 - 1873790
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggag 138  Q
    ||||||||||||||||||| |||||| |||||| ||||||| ||||||||||||||||| ||    ||||||||||||||||||||| |||||||    |    
T  1873639 gggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaattgaagagggctttttagcccggcccgtaaaagcccttgg 1873738  T
Q  139 ctagttagggctagcccgttcgggccacgggcagcctggcagcccgcaaaaa 190  Q
    |  |||||||||||||||| | |||  ||||| ||| || ||||||||||||    
T  1873739 cccgttagggctagcccgtcctggctccgggctgcccggaagcccgcaaaaa 1873790  T

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Target: chr7; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 39 - 192
Target Start/End: Complemental strand, 39494150 - 39493996
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttcc-agggctttttagcccggcccgaaaaagcctgga 137  Q
    ||||||||||||||||||| |||||| |||||| ||||||| ||||||||||||||||| |||    ||||||||||||||||||| | |||||||        
T  39494150 gggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaatttgaatagggctttttagcccggcctgtaaaagcccttg 39494051  T
Q  138 gctagttagggctagcccgttcgggccacgggcagcctggcagcccgcaaaaaat 192  Q
    ||  |||||||||||||||| |||||  ||||| ||| || ||||||||||||||    
T  39494050 gcccgttagggctagcccgtccgggctccgggctgcccggaagcccgcaaaaaat 39493996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 37 - 133
Target Start/End: Original strand, 35709894 - 35709990
Alignment:
Q  37 atgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcc 133  Q
    ||||||| ||||||||||||| |||||||| |||| |||||||||| ||||| |||||  |||||  ||||||||||||||||||||||||||||||    
T  35709894 atgggccagcccgaaagcccgaataaaacgcagggcttgggcctaaaaattgcagcccatattttatcagggctttttagcccggcccgaaaaagcc 35709990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 90 - 191
Target Start/End: Complemental strand, 17475791 - 17475690
Alignment:
Q  90 agcccgaatttttccagggctttttagcccggcccgaaaaagcctggagctagttagggctagcccgttcgggccacgggcagcctggcagcccgcaaaa 189  Q
    ||||||||||||| ||||| ||||||||||| |||||||||||| | |||| |||||||||||||||||||||| | || |||||   ||||||||||||    
T  17475791 agcccgaattttttcagggttttttagcccgacccgaaaaagcccgaagctcgttagggctagcccgttcgggctaaggccagcccaacagcccgcaaaa 17475692  T
Q  190 aa 191  Q
    ||    
T  17475691 aa 17475690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 90 - 191
Target Start/End: Original strand, 17577423 - 17577524
Alignment:
Q  90 agcccgaatttttccagggctttttagcccggcccgaaaaagcctggagctagttagggctagcccgttcgggccacgggcagcctggcagcccgcaaaa 189  Q
    ||||||||||||| ||||| ||||||||||| |||||||||||| | |||| |||||||||||||||||||||| | || |||||   ||||||||||||    
T  17577423 agcccgaattttttcagggttttttagcccgacccgaaaaagcccgaagctcgttagggctagcccgttcgggctaaggccagcccaacagcccgcaaaa 17577522  T
Q  190 aa 191  Q
    ||    
T  17577523 aa 17577524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 2621554 - 2621449
Alignment:
Q  28 gctgtcaaaatgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaa 127  Q
    |||||||||| ||| | ||  ||||||||| ||||||||||||||||| |||||||||||| ||||||||||||  || ||| |||||  ||||||| ||    
T  2621554 gctgtcaaaacgggtcagcttgaaagcccgaataaaacgtagggtttgagcctaataattgcagcccgaattttctcaaggccttttaatccggcccaaa 2621455  T
Q  128 aaagcc 133  Q
    ||||||    
T  2621454 aaagcc 2621449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 39 - 163
Target Start/End: Original strand, 16526191 - 16526315
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggag 138  Q
    ||||||||||||||| ||| |||||| |||||| ||| ||| ||||||||||||||||| ||    |||||||||||| |||||||| |||||||    |    
T  16526191 gggccggcccgaaagtccgaataaaatgtagggcttgagccgaataattggagcccgaaattgaagagggctttttagtccggcccgtaaaagcccttgg 16526290  T
Q  139 ctagttagggctagcccgttcgggc 163  Q
    |  |||||||||||||||| |||||    
T  16526291 cccgttagggctagcccgtccgggc 16526315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 42 - 151
Target Start/End: Complemental strand, 17511404 - 17511295
Alignment:
Q  42 ccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggagcta 141  Q
    |||||||||||||| | |||||| |||||   |||||| |  ||| | ||||||||||||| ||||| |||||||||||||||||||||||| | ||||     
T  17511404 ccggcccgaaagcctgaataaaatgtaggtcctgggccgataaatagtagcccgaattttttcagggttttttagcccggcccgaaaaagcccgaagctc 17511305  T
Q  142 gttagggcta 151  Q
    ||| ||||||    
T  17511304 gttcgggcta 17511295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 42 - 151
Target Start/End: Original strand, 17541810 - 17541919
Alignment:
Q  42 ccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggagcta 141  Q
    |||||||||||||| | |||||| |||||   |||||| |  ||| | ||||||||||||| ||||| |||||||||||||||||||||||| | ||||     
T  17541810 ccggcccgaaagcctgaataaaatgtaggtcctgggccgataaatagtagcccgaattttttcagggttttttagcccggcccgaaaaagcccgaagctc 17541909  T
Q  142 gttagggcta 151  Q
    ||| ||||||    
T  17541910 gttcgggcta 17541919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 39 - 133
Target Start/End: Original strand, 41200226 - 41200320
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcc 133  Q
    ||||||||||||||||||  |||||| ||||||  || ||| |  ||| | ||||||||||||| ||||| |||||||||||| |||||||||||    
T  41200226 gggccggcccgaaagcccaaataaaatgtagggcctgagccgataaatagcagcccgaattttttcagggttttttagcccggtccgaaaaagcc 41200320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 39 - 133
Target Start/End: Original strand, 49112541 - 49112635
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcc 133  Q
    ||||||||||||||||||| ||| ||  |||||  || ||| |  ||| | ||||||||||||| ||||||||||||||||| ||||||||||||    
T  49112541 gggccggcccgaaagcccgaatataatatagggcctgagccgataaatagcagcccgaattttttcagggctttttagcccgacccgaaaaagcc 49112635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 89 - 174
Target Start/End: Original strand, 47099197 - 47099282
Alignment:
Q  89 gagcccgaatttttccagggctttttagcccggcccgaaaaagcctggagctagttagggctagcccgttcgggccacgggcagcc 174  Q
    |||||||||||||  |||||||||||||||||||||  |||  |||||  |  |||||||||||||||  ||||||||||| ||||    
T  47099197 gagcccgaattttaacagggctttttagcccggcccttaaatacctggtacccgttagggctagcccgaacgggccacgggtagcc 47099282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 151
Target Start/End: Original strand, 4266913 - 4266974
Alignment:
Q  90 agcccgaatttttccagggctttttagcccggcccgaaaaagcctggagctagttagggcta 151  Q
    ||||||||||||| |||||||||||||||| || |||||| ||| | |||| ||| ||||||    
T  4266913 agcccgaattttttcagggctttttagcccagcacgaaaatgcccgaagctcgttcgggcta 4266974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 156
Target Start/End: Complemental strand, 47761779 - 47761690
Alignment:
Q  67 tagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggagctagttagggctagcccg 156  Q
    ||||| |||||||||| |  | |||||||||||||   ||||||||||||||||||||  ||||||| ||  |  |||||||||||||||    
T  47761779 tagggcttgggcctaaaatattgagcccgaattttaatagggctttttagcccggcccttaaaagcccggtacccgttagggctagcccg 47761690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 4e-42; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 28 - 139
Target Start/End: Complemental strand, 42739476 - 42739365
Alignment:
Q  28 gctgtcaaaatgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaa 127  Q
    |||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  42739476 gctgtcaaaacgggccggcccgaaagcccgaataaaacgtagggcttgggcctaataattgcagcccgaatttttccagggctttttagcccggcccaaa 42739377  T
Q  128 aaagcctggagc 139  Q
    |||||| |||||    
T  42739376 aaagcccggagc 42739365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 39 - 192
Target Start/End: Complemental strand, 30436568 - 30436414
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttcc-agggctttttagcccggcccgaaaaagcctgga 137  Q
    ||||||||||||||||||| |||||| |||||| ||||||| ||||||||||||||||| |||    ||||||||||||||||||||| |||||||        
T  30436568 gggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaatttgaagagggctttttagcccggcccgtaaaagcccttg 30436469  T
Q  138 gctagttagggctagcccgttcgggccacgggcagcctggcagcccgcaaaaaat 192  Q
    ||  |||||||||||||||| |||||  ||||| ||| || ||||||||||||||    
T  30436468 gcccgttagggctagcccgtccgggctccgggctgcccggaagcccgcaaaaaat 30436414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 39 - 192
Target Start/End: Complemental strand, 35813537 - 35813383
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttcc-agggctttttagcccggcccgaaaaagcctgga 137  Q
    ||||||||||||||||||| |||||| |||||| ||||||| ||||||||||||||||| |||    ||||||||||||||||||||| |||||||        
T  35813537 gggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaatttgaagagggctttttagcccggcccgtaaaagcccttg 35813438  T
Q  138 gctagttagggctagcccgttcgggccacgggcagcctggcagcccgcaaaaaat 192  Q
    ||  |||||||||||||||| |||||  ||||| ||| || ||||||||||||||    
T  35813437 gcccgttagggctagcccgtccgggctccgggctgcccggaagcccgcaaaaaat 35813383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 23 - 163
Target Start/End: Original strand, 3940656 - 3940797
Alignment:
Q  23 ttagggctgtcaaaatgggccggccc-gaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccgg 121  Q
    |||| ||||||||||||||||||||| ||||||||| |||||| |||||| ||||||| ||||||||||||||||| ||    |||||||||||||||||    
T  3940656 ttagagctgtcaaaatgggccggccccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaattgaagagggctttttagcccgg 3940755  T
Q  122 cccgaaaaagcctggagctagttagggctagcccgttcgggc 163  Q
    |||| |||||||    ||  |||||||||||||||| |||||    
T  3940756 cccgtaaaagccgttggcccgttagggctagcccgtccgggc 3940797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 39 - 192
Target Start/End: Complemental strand, 3654408 - 3654255
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggag 138  Q
    ||||||| || |||||||| |||||| |||||| ||||||| ||||||||||||||||| ||    ||||||||||||| ||||||| |||||||    |    
T  3654408 gggccggtccaaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaattgaagagggctttttagctcggcccgtaaaagcccttgg 3654309  T
Q  139 ctagttagggctagcccgttcgggccacgggcagcctggcagcccgcaaaaaat 192  Q
    || |||||||||||||||| |||||  ||||| ||| || ||||||||||||||    
T  3654308 ctcgttagggctagcccgtccgggcttcgggctgcccggaagcccgcaaaaaat 3654255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 37 - 185
Target Start/End: Original strand, 15243774 - 15243922
Alignment:
Q  37 atgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctgg 136  Q
    ||||||||||||||||||| |  ||||| ||||||  |||||| |||||||| |||||||||| || |||||||||||||||||| |||  |||||| |     
T  15243774 atgggccggcccgaaagcctgagtaaaatgtagggcctgggccgaataattgcagcccgaattctttcagggctttttagcccggaccgttaaagcccgt 15243873  T
Q  137 agctagttagggctagcccgttcgggccacgggcagcctggcagcccgc 185  Q
    |||  ||| |||||||||||  ||||| | |||||||| | ||||||||    
T  15243874 agcccgtttgggctagcccgcacgggctaagggcagcccgccagcccgc 15243922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 39 - 133
Target Start/End: Original strand, 2349696 - 2349789
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcc 133  Q
    ||||| ||||||||||||| |||||| ||||||  |||||| |||||||| ||| ||||||||| ||||||||||||||||||||| ||||||||    
T  2349696 gggccagcccgaaagcccgaataaaatgtagggcctgggccgaataattgcagctcgaattttt-cagggctttttagcccggcccaaaaaagcc 2349789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 37 - 121
Target Start/End: Original strand, 9201110 - 9201194
Alignment:
Q  37 atgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccgg 121  Q
    |||| |||||||||||| ||| ||||||||||||||||||||| |||||||| |||| ||||| || ||| ||||||||||||||    
T  9201110 atggaccggcccgaaagtccgaataaaacgtagggtttgggccgaataattgcagcctgaattctttcagagctttttagcccgg 9201194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 59 - 130
Target Start/End: Original strand, 6142918 - 6142989
Alignment:
Q  59 ataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaa 130  Q
    |||||||||||| ||| |||| |||||||| |||||| ||| ||||||||||||||||||||||||| ||||    
T  6142918 ataaaacgtaggatttaggccgaataattgcagcccggattcttccagggctttttagcccggcccgtaaaa 6142989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 36 - 132
Target Start/End: Complemental strand, 29894570 - 29894474
Alignment:
Q  36 aatgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagc 132  Q
    ||||||||||||| |||||||| ||||||||||||  |||| ||||| ||||| |||||||||   | ||||  |||||||||||| ||||||||||    
T  29894570 aatgggccggcccaaaagcccgaataaaacgtaggacttggacctaaaaattgcagcccgaataaattcaggattttttagcccggtccgaaaaagc 29894474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 150
Target Start/End: Original strand, 28968204 - 28968307
Alignment:
Q  47 ccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggagctagttag 146  Q
    |||||| |||| |||||| | ||||  |||||| |||||| | |||| |||||||| ||||||||||||||||||||| |||||||| | |||  |||||    
T  28968204 ccgaaaacccgaataaaatgcagggcctgggccgaataatagaagcctgaattttttcagggctttttagcccggcccaaaaaagcccgtagcccgttag 28968303  T
Q  147 ggct 150  Q
    ||||    
T  28968304 ggct 28968307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 156
Target Start/End: Complemental strand, 11202278 - 11202189
Alignment:
Q  67 tagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggagctagttagggctagcccg 156  Q
    |||||||||||||||| |  | |||||||||||||   ||||||||||||||||||||  ||||||| ||  |  |||||||||||||||    
T  11202278 tagggtttgggcctaaaatattgagcccgaattttaatagggctttttagcccggcccttaaaagcccggtacccgttagggctagcccg 11202189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 19293658 - 19293590
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagg 107  Q
    |||||||||||||| |||  |||||||||| ||||||| |||  |||||| ||||||||||||| ||||    
T  19293658 gggccggcccgaaaaccctaataaaacgtatggtttggaccttttaattgcagcccgaattttttcagg 19293590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 156
Target Start/End: Original strand, 26098251 - 26098384
Alignment:
Q  23 ttagggctgtcaaaatgggccggcccgaa-agcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccgg 121  Q
    |||| |||||||||| |||||||||||   |||||| |||||   ||||| |||||||||| |  | |||||||||||||   |||||||||||||||||    
T  26098251 ttagagctgtcaaaacgggccggcccgtttagcccgaataaata-tagggcttgggcctaaaatattgagcccgaattttaatagggctttttagcccgg 26098349  T
Q  122 cccgaaaaagcctggagctagttagggctagcccg 156  Q
    |||  ||||||| ||  |  |||||||||||||||    
T  26098350 cccttaaaagcccggtacccgttagggctagcccg 26098384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 156
Target Start/End: Original strand, 5927100 - 5927189
Alignment:
Q  67 tagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggagctagttagggctagcccg 156  Q
    ||||| |||||||||| |  | |||||||||||||   ||||||||||||||||||||  ||||||| ||  |  |||||||||||||||    
T  5927100 tagggcttgggcctaaaatattgagcccgaattttaatagggctttttagcccggcccttaaaagcccggtacccgttagggctagcccg 5927189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 156
Target Start/End: Original strand, 6266293 - 6266382
Alignment:
Q  67 tagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggagctagttagggctagcccg 156  Q
    ||||| |||||||||| |  | |||||||||||||   ||||||||||||||||||||  ||||||| ||  |  |||||||||||||||    
T  6266293 tagggcttgggcctaaaatattgagcccgaattttaatagggctttttagcccggcccttaaaagcccggtacccgttagggctagcccg 6266382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 156
Target Start/End: Complemental strand, 24101844 - 24101755
Alignment:
Q  67 tagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggagctagttagggctagcccg 156  Q
    ||||| |||||||||| |  | |||||||||||||   ||||||||||||||||||||  ||||||| ||  |  |||||||||||||||    
T  24101844 tagggcttgggcctaaaatattgagcccgaattttaatagggctttttagcccggcccttaaaagcccggtacccgttagggctagcccg 24101755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 156
Target Start/End: Complemental strand, 38231824 - 38231735
Alignment:
Q  67 tagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggagctagttagggctagcccg 156  Q
    ||||| |||||||||| |  | |||||||||||||   ||||||||||||||||||||  ||||||| ||  |  |||||||||||||||    
T  38231824 tagggcttgggcctaaaatattgagcccgaattttaatagggctttttagcccggcccttaaaagcccggtacccgttagggctagcccg 38231735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 28 - 139
Target Start/End: Complemental strand, 46237710 - 46237599
Alignment:
Q  28 gctgtcaaaatgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaa 127  Q
    |||||||||| |||||| || ||||||||| ||||||  ||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  46237710 gctgtcaaaacgggccgacctgaaagcccgaataaaatatagggcttgggcctaataattgcagcccgaatttttccagggctttttagctcggcccgaa 46237611  T
Q  128 aaagcctggagc 139  Q
    |||||| |||||    
T  46237610 aaagcccggagc 46237599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 39 - 192
Target Start/End: Original strand, 12745580 - 12745734
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttcc-agggctttttagcccggcccgaaaaagcctgga 137  Q
    ||||||||||||||||||| |||||| |||||| ||||||| ||||||||||||||||| |||    ||||||||||||||||||||| |||||||        
T  12745580 gggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaatttgaatagggctttttagcccggcccgtaaaagcccttg 12745679  T
Q  138 gctagttagggctagcccgttcgggccacgggcagcctggcagcccgcaaaaaat 192  Q
    ||  |||||||||||||||| |||||  ||||| ||| || ||||||||||||||    
T  12745680 gcccgttagggctagcccgtccgggctccgggctgcccggaagcccgcaaaaaat 12745734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 39 - 192
Target Start/End: Original strand, 12756569 - 12756723
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttcc-agggctttttagcccggcccgaaaaagcctgga 137  Q
    ||||||||||||||||||| |||||| |||||| ||||||| ||||||||||||||||| |||    ||||||||||||||||||||| |||||||        
T  12756569 gggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaatttgaatagggctttttagcccggcccgtaaaagcccttg 12756668  T
Q  138 gctagttagggctagcccgttcgggccacgggcagcctggcagcccgcaaaaaat 192  Q
    ||  |||||||||||||||| |||||  ||||| ||| || ||||||||||||||    
T  12756669 gcccgttagggctagcccgtccgggctccgggctgcccggaagcccgcaaaaaat 12756723  T

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Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 39 - 192
Target Start/End: Complemental strand, 9660928 - 9660775
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggag 138  Q
    |||||||||||||| |||| |||||| |||||| ||||||| ||||||||||||||||| ||    ||||||||||||||||||||| |||||||    |    
T  9660928 gggccggcccgaaatcccgaataaaatgtagggcttgggccgaataattggagcccgaaattgaagagggctttttagcccggcccgtaaaagcccttgg 9660829  T
Q  139 ctagttagggctagcccgttcgggccacgggcagcctggcagcccgcaaaaaat 192  Q
    |  |||||||||||||||| |||||  ||||| ||| || ||||||||||||||    
T  9660828 cccgttagggctagcccgtccgggctccgggctgcccggaagcccgcaaaaaat 9660775  T

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Target: chr1; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 39 - 192
Target Start/End: Complemental strand, 43781272 - 43781119
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggag 138  Q
    ||||||||||||||||||| |||||| |||||| ||||||| ||||||||||||||||| ||    |||| |||||||||||||||| |||||||    |    
T  43781272 gggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaattgaagagggttttttagcccggcccgtaaaagcccttgg 43781173  T
Q  139 ctagttagggctagcccgttcgggccacgggcagcctggcagcccgcaaaaaat 192  Q
    |  |||||||||||||||| |||||  ||||| ||| || ||||||||||||||    
T  43781172 cccgttagggctagcccgtccgggctccgggctgcccggaagcccgcaaaaaat 43781119  T

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Target: chr1; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 39 - 192
Target Start/End: Complemental strand, 42763354 - 42763201
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggag 138  Q
    ||||||||||||||||||| |||||| |||||| ||||||| |||||||| |||||||| ||    ||||||||||||||||| ||| |||||||    |    
T  42763354 gggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattgaagcccgaaattgaagagggctttttagcccggtccgtaaaagcccttgg 42763255  T
Q  139 ctagttagggctagcccgttcgggccacgggcagcctggcagcccgcaaaaaat 192  Q
    |  |||||||||||||||| |||||  ||||| ||| || ||||||||||||||    
T  42763254 cccgttagggctagcccgtccgggctccgggctgcccggaagcccgcaaaaaat 42763201  T

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Target: chr1; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 39 - 192
Target Start/End: Complemental strand, 45757343 - 45757190
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggag 138  Q
    ||||||||||||||||||| |||||| |||||| ||||||| ||||||||||||||||| ||    ||||||||||||||||||||  |||||||    |    
T  45757343 gggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaattgaagagggctttttagcccggcccataaaagcccttgg 45757244  T
Q  139 ctagttagggctagcccgttcgggccacgggcagcctggcagcccgcaaaaaat 192  Q
    |  |||||||||||||||| |||||  ||||| ||| |  ||||||||||||||    
T  45757243 cccgttagggctagcccgtccgggctccgggctgcccgaaagcccgcaaaaaat 45757190  T

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Target: chr1; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 37 - 133
Target Start/End: Original strand, 32057557 - 32057653
Alignment:
Q  37 atgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcc 133  Q
    |||||||||||||||| |||| |||||||| ||||  |||||| || |||||||||||||||||||| ||||||||||||||||| ||| |||||||    
T  32057557 atgggccggcccgaaatcccgaataaaacgcagggcctgggccgaaaaattggagcccgaatttttctagggctttttagcccggtccgtaaaagcc 32057653  T

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Target: chr1; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 39 - 133
Target Start/End: Original strand, 33189029 - 33189123
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcc 133  Q
    ||||||||||||||||||| |||||| |||||| ||||||| ||||||||||||||||| ||    ||||||||||||||||||||| |||||||    
T  33189029 gggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaattgaagagggctttttagcccggcccgtaaaagcc 33189123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 36 - 184
Target Start/End: Complemental strand, 31489609 - 31489461
Alignment:
Q  36 aatgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctg 135  Q
    |||||||| ||||||||||||| ||||||| ||||| |||||||||| ||||  |||||||||   | | |||||||||| ||||||||||||| ||| |    
T  31489609 aatgggccagcccgaaagcccgaataaaacatagggcttgggcctaaaaattacagcccgaataaattccgggctttttaacccggcccgaaaaggcccg 31489510  T
Q  136 gagctagttagggctagcccgttcgggccacgggcagcctggcagcccg 184  Q
       |  ||||||||||||||||||||||  |||| |||| |||||||||    
T  31489509 ttacccgttagggctagcccgttcgggcttcgggtagcccggcagcccg 31489461  T

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Target: chr1; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 39 - 133
Target Start/End: Complemental strand, 48470532 - 48470438
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcc 133  Q
    |||||||||| |||||||| |||||| ||||||| |||||| |  ||| | ||||||||||||| |||| |||||||||||||||||||||||||    
T  48470532 gggccggcccaaaagcccgaataaaatgtagggtctgggccgataaatagcagcccgaattttttcaggactttttagcccggcccgaaaaagcc 48470438  T

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Target: chr1; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 43 - 174
Target Start/End: Original strand, 45038985 - 45039116
Alignment:
Q  43 cggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggagctag 142  Q
    |||||||  ||||||  |||||| ||||||||||||  || ||||  ||||||||||||||||||| ||||||||||| |||||||||||| | | |  |    
T  45038985 cggcccgttagcccgagtaaaacttagggtttgggcacaaaaattctagcccgaatttttccagggttttttagcccgacccgaaaaagcccgcaacccg 45039084  T
Q  143 ttagggctagcccgttcgggccacgggcagcc 174  Q
    || ||||| ||||| |||||| | ||||||||    
T  45039085 tttgggctggcccgctcgggctaagggcagcc 45039116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 39 - 133
Target Start/End: Complemental strand, 49229267 - 49229174
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcc 133  Q
    ||||| ||||||||||||| |||||| | |||||||||||| |  ||| | |||||| |||||| |||||||||||||||| |||||||||||||    
T  49229267 gggccagcccgaaagcccgaataaaatgcagggtttgggccgataaatagcagcccggattttttcagggctttttagccc-gcccgaaaaagcc 49229174  T

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Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 39 - 133
Target Start/End: Original strand, 6501612 - 6501706
Alignment:
Q  39 gggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcc 133  Q
    |||||| |||||||||||| |||||| | ||||  |||||| |  ||| | ||||| ||||||| ||| ||||||||||||||||||||||||||    
T  6501612 gggccgacccgaaagcccgaataaaatgcagggcctgggccgataaatagaagcccaaattttttcagagctttttagcccggcccgaaaaagcc 6501706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 41 - 192
Target Start/End: Complemental strand, 47188665 - 47188516
Alignment:
Q  41 gccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggagct 140  Q
    ||||||| ||||||||| |||||| |||||| ||||||  ||||||||||||| ||| ||    ||| ||||||||||||||||| |||||||    ||     
T  47188665 gccggcctgaaagcccgaataaaatgtagggcttgggc--aataattggagcctgaaattgaagaggactttttagcccggcccgtaaaagcccttggcc 47188568  T
Q  141 agttagggctagcccgttcgggccacgggcagcctggcagcccgcaaaaaat 192  Q
     |||| ||||||||||| ||| |  ||||| ||| || ||||||||||||||    
T  47188567 cgttaaggctagcccgtccggactccgggctgcccggaagcccgcaaaaaat 47188516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 129
Target Start/End: Original strand, 30533392 - 30533486
Alignment:
Q  35 aaatgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaa 129  Q
    ||||||| ||||||||||||||| |||||| |||||  |||||||||| ||||  |||||| ||   |   ||||||||||||||||||||||||    
T  30533392 aaatgggtcggcccgaaagcccgaataaaatgtaggtcttgggcctaaaaattacagcccggatagattatgggctttttagcccggcccgaaaa 30533486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 129
Target Start/End: Original strand, 4220876 - 4220977
Alignment:
Q  28 gctgtcaaaatgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaa 127  Q
    |||| ||||||||||||| ||||||||||| | |||| | ||||  |||||| || ||| |  |||| |||||||  |||||||||||||| ||||||||    
T  4220876 gctgccaaaatgggccggtccgaaagcccgaaaaaaatgcagggcctgggccgaaaaatggccgcccaaatttttttagggctttttagcctggcccgaa 4220975  T
Q  128 aa 129  Q
    ||    
T  4220976 aa 4220977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 89 - 174
Target Start/End: Original strand, 20722232 - 20722317
Alignment:
Q  89 gagcccgaatttttccagggctttttagcccggcccgaaaaagcctggagctagttagggctagcccgttcgggccacgggcagcc 174  Q
    |||||||||||||   |||||||||||||||||||  |||||||||||  |  |||||||||||||||  |||||| |||| ||||    
T  20722232 gagcccgaattttaatagggctttttagcccggccttaaaaagcctggtacccgttagggctagcccgaacgggccgcgggtagcc 20722317  T

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Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 45565814 - 45565859
Alignment:
Q  90 agcccgaatttttccagggctttttagcccggcccgaaaaagcctg 135  Q
    |||||||| |||| ||||||||||||||||||||||||||| ||||    
T  45565814 agcccgaaatttttcagggctttttagcccggcccgaaaaaacctg 45565859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 174
Target Start/End: Original strand, 17331253 - 17331400
Alignment:
Q  28 gctgtcaaaatgggccggcccgaa-agcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccga 126  Q
    ||||||||||||||||||||  || |||||| |||||| ||||||  ||| || |  ||| | ||| | | ||||| ||||||||||||| | || ||||    
T  17331253 gctgtcaaaatgggccggccgtaagagcccgaataaaatgtagggcctggaccgataaatagcagctcaagttttttcagggctttttaggctggtccga 17331352  T
Q  127 aaaagcctggagctagttagggctagcccgttcgggccacgggcagcc 174  Q
    ||||||| | |||  |||||||||||| ||||| ||| | ||||||||    
T  17331353 aaaagcccgaagcccgttagggctagctcgttcaggctaagggcagcc 17331400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 131
Target Start/End: Complemental strand, 15699394 - 15699324
Alignment:
Q  61 aaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaag 131  Q
    |||| |||||| |||||||||| ||| | |||||||||||   ||||||||||| ||||||||||| ||||    
T  15699394 aaaaggtagggcttgggcctaaaaatggcagcccgaatttaaacagggctttttggcccggcccgataaag 15699324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 156
Target Start/End: Complemental strand, 39995559 - 39995470
Alignment:
Q  67 tagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggagctagttagggctagcccg 156  Q
    |||||||||||||||| |  | |||| ||||||||   ||||||||||||||||||||  ||||||| ||  |  |||||||||||||||    
T  39995559 tagggtttgggcctaaaatattgagctcgaattttaatagggctttttagcccggcccttaaaagcccggtacccgttagggctagcccg 39995470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 156
Target Start/End: Complemental strand, 41310628 - 41310539
Alignment:
Q  67 tagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggagctagttagggctagcccg 156  Q
    ||||| |||||||||| |  | |||||||||||||   ||||||||||||||||||||  ||||||| ||  |  |||||||||||||||    
T  41310628 tagggcttgggcctaaaatattgagcccgaattttaatagggctttttagcccggcccttaaaagcccggcacccgttagggctagcccg 41310539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 174
Target Start/End: Complemental strand, 50512058 - 50511973
Alignment:
Q  89 gagcccgaatttttccagggctttttagcccggcccgaaaaagcctggagctagttagggctagcccgttcgggccacgggcagcc 174  Q
    |||||||||||||   |||||||||||||||||||| |||||||| |   |  |||||||||||||||  ||||||| ||| ||||    
T  50512058 gagcccgaattttaatagggctttttagcccggccctaaaaagcccgctacccgttagggctagcccgaacgggccaagggtagcc 50511973  T

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Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 44922234 - 44922278
Alignment:
Q  89 gagcccgaatttttccagggctttttagcccggcccgaaaaagcc 133  Q
    |||||||||||||   |||||||||||||||||||| ||||||||    
T  44922234 gagcccgaattttaatagggctttttagcccggccctaaaaagcc 44922278  T

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Target: scaffold1449 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold1449
Description:

Target: scaffold1449; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 1650 - 1581
Alignment:
Q  37 atgggccggcccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccag 106  Q
    ||||||||||||||||||||| |||||| ||||||||||||| ||||||||  |||||||||||||||||    
T  1650 atgggccggcccgaaagcccgaataaaatgtagggtttgggcttaataattttagcccgaatttttccag 1581  T

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Target: scaffold0219 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 49 - 192
Target Start/End: Complemental strand, 16730 - 16587
Alignment:
Q  49 gaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggagctagttaggg 148  Q
    ||||||||| |||||| |||||| ||||||| |||||||| |||||||| ||    ||||||||||||||||||||| |||||||    ||  |||||||    
T  16730 gaaagcccgaataaaatgtagggcttgggccgaataattgtagcccgaaattgaagagggctttttagcccggcccgtaaaagcccttggcccgttaggg 16631  T
Q  149 ctagcccgttcgggccacgggcagcctggcagcccgcaaaaaat 192  Q
    ||||||||| |||||  ||||| ||  || ||||||||||||||    
T  16630 ctagcccgtccgggctccgggctgctcggaagcccgcaaaaaat 16587  T

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Target: scaffold0295 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 47 - 131
Target Start/End: Original strand, 6177 - 6261
Alignment:
Q  47 ccgaaagcccgcataaaacgtagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaag 131  Q
    |||| |||||| |||||| ||||||  |||||  |||||||| || |||||||||| |||||||||||||||||||||| |||||    
T  6177 ccgatagcccgaataaaatgtagggcctgggcggaataattgcagtccgaattttttcagggctttttagcccggcccgcaaaag 6261  T

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Target: scaffold0007 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 156
Target Start/End: Complemental strand, 231740 - 231673
Alignment:
Q  89 gagcccgaatttttccagggctttttagcccggcccgaaaaagcctggagctagttagggctagcccg 156  Q
    |||||||||||||   |||||||||||||||||||| ||||||||||   |  |||||||||||||||    
T  231740 gagcccgaattttaatagggctttttagcccggccctaaaaagcctgctacccgttagggctagcccg 231673  T

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Target: scaffold0124 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 156
Target Start/End: Complemental strand, 40147 - 40058
Alignment:
Q  67 tagggtttgggcctaataattggagcccgaatttttccagggctttttagcccggcccgaaaaagcctggagctagttagggctagcccg 156  Q
    ||||| |||||||||| |  | ||||||| |||||   ||||||||||||||||||||  ||||||||||  |  |||||||||||||||    
T  40147 tagggcttgggcctaaaatattgagcccgtattttaatagggctttttagcccggcccttaaaagcctggtacccgttagggctagcccg 40058  T

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Target: scaffold0019 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 103180 - 103136
Alignment:
Q  89 gagcccgaatttttccagggctttttagcccggcccgaaaaagcc 133  Q
    |||||||||||||   |||||||||||||||||||| ||||||||    
T  103180 gagcccgaattttaatagggctttttagcccggccctaaaaagcc 103136  T

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