View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20127_low_8 (Length: 377)
Name: NF20127_low_8
Description: NF20127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20127_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 47293040 - 47293374
Alignment:
| Q |
1 |
tgcacgagagttcattaacaaaatccgtgaagtcagtgagtcaaaaaattgcaaggctgttattatcggaattgacagttcgggggcaatattgagtact |
100 |
Q |
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| T |
47293040 |
tgcacaagagttcattaacaaaatccgtgaagtcagtgagtcaaaaaattgcaaggctgttattatccgaattgacagttcgggggcaatattgagtact |
47293139 |
T |
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| Q |
101 |
ctgattcaatgtggacagaaattaaatcaggtctcttgctgaaaaaataccaattattgcttcgctgatcgagcaatgggcgcaggatactacgtggcaa |
200 |
Q |
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| T |
47293140 |
ctgattcaatgtggacagaaattaaatcaggtctcttgctgaaaaaataccaattattgcttcgctgatcgagcaatgggcgcaggatactacgtggcaa |
47293239 |
T |
|
| Q |
201 |
tgggcgcgcgcaggagttattgttgcagaaaatcttaccttaactggttcaattggagtggacctgggaatctttagtcttgagaatatgtataaattga |
300 |
Q |
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| T |
47293240 |
tgg----gcgcaggagttattgttgcagaaaatcttaccttaactggttcaattggagtggacctgggaatctttagtcttgagaatatgtataaattga |
47293335 |
T |
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| Q |
301 |
ttgagtgggaagaatttacaagttggggtacttacaagt |
339 |
Q |
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| T |
47293336 |
ttgagtgggaagaatttacaagttggggtacttacaagt |
47293374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 184 - 261
Target Start/End: Complemental strand, 45878736 - 45878663
Alignment:
| Q |
184 |
aggatactacgtggcaatgggcgcgcgcaggagttattgttgcagaaaatcttaccttaactggttcaattggagtgg |
261 |
Q |
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| T |
45878736 |
aggatactacatggcaatgggagc----aggagctattgttgcagaaagtctaaccttaactggttcaattggagtgg |
45878663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 210 - 248
Target Start/End: Complemental strand, 56208915 - 56208877
Alignment:
| Q |
210 |
gcaggagttattgttgcagaaaatcttaccttaactggt |
248 |
Q |
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| T |
56208915 |
gcaggagttattgttgcagaaaatcttaccttaactggt |
56208877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 11 - 270
Target Start/End: Complemental strand, 7972654 - 7972399
Alignment:
| Q |
11 |
ttcattaacaaaatccgtgaagtcagtgagtcaaaaaattgcaaggctgttattatcggaattgacagttcggggg-caatattgagtactctgattcaa |
109 |
Q |
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||||||||||| |||||||||| | ||||||||||||| | |||||||||||||||| ||||||| |||| ||||| | ||||| || | | || || |
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| T |
7972654 |
ttcattaacaagatccgtgaagccggtgagtcaaaaaaattcaaggctgttattatccgaattgatagtttggggggcgatattttgttttattctttaa |
7972555 |
T |
|
| Q |
110 |
tgtggacagaaattaaatcaggtctcttgctgaaaaaataccaattattgcttcg----ctgatcgagcaatgggcgcaggatactacgtggcaatgggc |
205 |
Q |
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| T |
7972554 |
tgtggacaaaaat-----caggtctcttgcttccaaaaaaccagttattgctttgatgtctgatctggcaatgagcgcaggatactacatggcaatgggc |
7972460 |
T |
|
| Q |
206 |
gcgcgcaggagttattgttgcagaaaatcttaccttaactggttcaattggagtggacctgggaa |
270 |
Q |
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| T |
7972459 |
gc----aggagttattgttgcagaaaaccttaccttaactggttcaattggagtggacttgggaa |
7972399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 7962096 - 7962048
Alignment:
| Q |
215 |
agttattgttgcagaaaatcttaccttaactggttcaattggagtggac |
263 |
Q |
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| T |
7962096 |
agttattgttgcggaaaatcttaccttaactggttcaattggggtggac |
7962048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 7962276 - 7962197
Alignment:
| Q |
7 |
agagttcattaacaaaatccgtgaagtcagtgagtcaaaaaattgcaaggctgttattatcggaattgacagttcggggg |
86 |
Q |
| |
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|||||||||| |||| |||||||||||| |||| |||| ||| | ||||||||||| |||| |||| ||||||| ||||| |
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| T |
7962276 |
agagttcattgacaagatccgtgaagtcggtgactcaacaaaattcaaggctgttaatatccgaatcgacagtttggggg |
7962197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 259
Target Start/End: Original strand, 24354076 - 24354117
Alignment:
| Q |
218 |
tattgttgcagaaaatcttaccttaactggttcaattggagt |
259 |
Q |
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| T |
24354076 |
tattgttgcagaaagtcttaccttaactggttcaattggagt |
24354117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 182 - 254
Target Start/End: Complemental strand, 35802767 - 35802699
Alignment:
| Q |
182 |
gcaggatactacgtggcaatgggcgcgcgcaggagttattgttgcagaaaatcttaccttaactggttcaatt |
254 |
Q |
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|||||||||||| |||||||||| || ||||| ||| || |||||||||||||| ||||||||||||||| |
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| T |
35802767 |
gcaggatactacatggcaatgggagc----aggagctatcgtagcagaaaatcttactttaactggttcaatt |
35802699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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