View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20128_high_2 (Length: 551)

Name: NF20128_high_2
Description: NF20128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20128_high_2
NF20128_high_2
[»] chr7 (21 HSPs)
chr7 (1-91)||(5811161-5811252)
chr7 (1-90)||(13108249-13108339)
chr7 (4-94)||(46475129-46475221)
chr7 (1-91)||(23980233-23980324)
chr7 (4-87)||(21807324-21807408)
chr7 (8-89)||(36346564-36346647)
chr7 (13-91)||(42950034-42950113)
chr7 (8-67)||(15020388-15020447)
chr7 (8-90)||(42220962-42221045)
chr7 (32-92)||(384573-384635)
chr7 (8-92)||(34828174-34828259)
chr7 (8-90)||(45782658-45782742)
chr7 (5-90)||(36957535-36957620)
chr7 (8-90)||(28307493-28307577)
chr7 (8-91)||(31148399-31148483)
chr7 (312-355)||(10612389-10612432)
chr7 (15-89)||(7699882-7699958)
chr7 (15-89)||(7700080-7700156)
chr7 (15-89)||(7700278-7700354)
chr7 (15-89)||(7700476-7700552)
chr7 (8-90)||(26972201-26972285)
[»] chr6 (4 HSPs)
chr6 (4-88)||(14023039-14023124)
chr6 (1-90)||(24208546-24208636)
chr6 (431-476)||(126868-126913)
chr6 (8-90)||(3118045-3118129)
[»] chr2 (9 HSPs)
chr2 (1-91)||(6376236-6376327)
chr2 (8-96)||(16089930-16090019)
chr2 (5-94)||(36315667-36315758)
chr2 (8-92)||(37498859-37498945)
chr2 (8-91)||(44958222-44958307)
chr2 (8-86)||(3830900-3830979)
chr2 (8-90)||(33732678-33732761)
chr2 (4-89)||(41188874-41188961)
chr2 (1-29)||(24137153-24137181)
[»] chr8 (9 HSPs)
chr8 (4-89)||(33726117-33726203)
chr8 (15-90)||(18184669-18184745)
chr8 (8-91)||(12665454-12665539)
chr8 (193-250)||(26295843-26295900)
chr8 (193-250)||(26309100-26309157)
chr8 (193-250)||(26343161-26343218)
chr8 (4-88)||(38845023-38845109)
chr8 (15-91)||(36189332-36189408)
chr8 (15-89)||(10203780-10203856)
[»] chr3 (7 HSPs)
chr3 (1-92)||(39467098-39467190)
chr3 (8-91)||(51339781-51339865)
chr3 (8-92)||(29472918-29473003)
chr3 (8-89)||(21559670-21559753)
chr3 (5-89)||(38231398-38231484)
chr3 (8-90)||(30735494-30735578)
chr3 (8-89)||(39072278-39072360)
[»] chr1 (5 HSPs)
chr1 (4-87)||(19258674-19258758)
chr1 (4-90)||(28647458-28647545)
chr1 (8-90)||(34307136-34307220)
chr1 (8-90)||(2509133-2509217)
chr1 (10-87)||(39249864-39249943)
[»] chr4 (8 HSPs)
chr4 (8-89)||(21390955-21391037)
chr4 (8-90)||(44275815-44275898)
chr4 (4-70)||(52191220-52191286)
chr4 (8-89)||(49243924-49244006)
chr4 (8-92)||(6112739-6112824)
chr4 (8-90)||(7217874-7217958)
chr4 (5-89)||(46192465-46192551)
chr4 (8-87)||(35545021-35545102)
[»] scaffold0043 (1 HSPs)
scaffold0043 (15-91)||(87160-87237)
[»] chr5 (6 HSPs)
chr5 (4-88)||(4300544-4300629)
chr5 (8-91)||(27553372-27553455)
chr5 (8-90)||(31800667-31800750)
chr5 (8-87)||(19124474-19124554)
chr5 (43-90)||(40887940-40887988)
chr5 (8-90)||(42683708-42683792)
[»] scaffold0438 (1 HSPs)
scaffold0438 (193-250)||(13322-13379)
[»] scaffold0250 (1 HSPs)
scaffold0250 (272-325)||(4513-4568)


Alignment Details
Target: chr7 (Bit Score: 76; Significance: 7e-35; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 5811252 - 5811161
Alignment:
Q  1 gaggatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaaa-ggtgtctacctatctttttccta 91  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  5811252 gaggatgtgatgtgaaattactaaaatacccctaacacatgaggtgtacatgggaggtgtataaaaaagggtgtctacctatctttttccta 5811161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 13108249 - 13108339
Alignment:
Q  1 gaggatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaaa-ggtgtctacctatctttttcct 90  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||  |||||||||||||| ||||||||||||||||||||||    
T  13108249 gaggatgtgatgtgaaattactaaaatacccctaacacatgaggtgtacatgaaaggtgtataaaaaagggtgtctacctatctttttcct 13108339  T

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Target: chr7; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 46475129 - 46475221
Alignment:
Q  4 gatgtgatgtgaaattactaaaatactcc-taacacgtgaggtgtacatgggaggtgtataaaaaagg-tgtctacctatctttttcctatat 94  Q
    |||||||||||||||||||||||||| || |||||| |||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  46475129 gatgtgatgtgaaattactaaaataccccataacacatgagatgtacatgagaggtgtataaaaaagggtgtctacctatctttttcctatat 46475221  T

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Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 23980233 - 23980324
Alignment:
Q  1 gaggatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaaagg-tgtctacctatctttttccta 91  Q
    |||||||||||||||||||||||||||||  ||||||  |||| ||||||||| |  ||||||||||||| |||||||||||||||||||||    
T  23980233 gaggatgtgatgtgaaattactaaaatacctctaacatatgagatgtacatggaaaatgtataaaaaaggatgtctacctatctttttccta 23980324  T

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Target: chr7; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 21807408 - 21807324
Alignment:
Q  4 gatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaaagg-tgtctacctatcttttt 87  Q
    ||||| |||||||||||||||||||| ||||||||||| |||||| ||| || |||||||||||||| |||| ||||||||||||    
T  21807408 gatgttatgtgaaattactaaaatacccctaacacgtggggtgtatatgagaagtgtataaaaaaggttgtcaacctatcttttt 21807324  T

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Target: chr7; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 36346647 - 36346564
Alignment:
Q  8 tgatgtgaaattactaaaatactcctaacacgtga-ggtgtacatgggaggtgtat-aaaaaaggtgtctacctatctttttcc 89  Q
    |||||| ||||||||||||||| |||||||| ||| |||||||||  ||||||||| ||||| |||||||||||||||||||||    
T  36346647 tgatgtaaaattactaaaatacccctaacacatgagggtgtacataagaggtgtatgaaaaagggtgtctacctatctttttcc 36346564  T

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Target: chr7; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 42950113 - 42950034
Alignment:
Q  13 tgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaaa-ggtgtctacctatctttttccta 91  Q
    ||||||||||||||||| ||| | || || ||||||||||  |||||||||||||| |||||||||||||||||||||||    
T  42950113 tgaaattactaaaatacccctgaaacatggggtgtacatgctaggtgtataaaaaagggtgtctacctatctttttccta 42950034  T

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Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 15020388 - 15020447
Alignment:
Q  8 tgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaa 67  Q
    |||||||||||||||||||||  |||||||| |||| |||| ||||||||||||||||||    
T  15020388 tgatgtgaaattactaaaatatccctaacacatgagatgtatatgggaggtgtataaaaa 15020447  T

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Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 42221045 - 42220962
Alignment:
Q  8 tgatgtgaaattactaaaa-tactcctaacacgtgaggtgtacatgggaggtgtataaaaaaggtgtctacctatctttttcct 90  Q
    |||||| |||||||||||| ||| |||||||| ||  ||||||||  | ||||||| |||||||||||||||||||||||||||    
T  42221045 tgatgttaaattactaaaaatacccctaacacatggagtgtacataagtggtgtatgaaaaaggtgtctacctatctttttcct 42220962  T

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Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 384573 - 384635
Alignment:
Q  32 ctaacacgtgaggtgtacatgggaggtgtata-aaaaagg-tgtctacctatctttttcctat 92  Q
    ||||||| |||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  384573 ctaacacatgagatgtacatgggaggtgtatagaaaaaggatgtctacctatctttttcctat 384635  T

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Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 34828174 - 34828259
Alignment:
Q  8 tgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaaagg-tgtctacctatctttttcctat 92  Q
    |||||| ||||||||||||||| |||||||  || ||||| |||  | ||||||| ||||||| ||||||||||||||||||||||    
T  34828174 tgatgtaaaattactaaaatacccctaacatatggggtgtgcataagtggtgtatgaaaaaggatgtctacctatctttttcctat 34828259  T

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Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 45782742 - 45782658
Alignment:
Q  8 tgatgtgaaattactaaaatactcctaacacgtgag-gtgtacatgggaggtgtataaaaaagg-tgtctacctatctttttcct 90  Q
    |||||| ||||||||||||||| |||||||| || | ||||||||   | |||||||||||||| ||||||||||||||||||||    
T  45782742 tgatgtaaaattactaaaatacccctaacacatgggagtgtacataaaaagtgtataaaaaagggtgtctacctatctttttcct 45782658  T

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Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 36957535 - 36957620
Alignment:
Q  5 atgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaaag-gtgtctacctatctttttcct 90  Q
    |||| |||| ||||||||||||||| || ||||| || |||||| |||  ||||||||||||||  |||||||||||||||||||||    
T  36957535 atgtaatgtaaaattactaaaatacccccaacacatg-ggtgtatatgaaaggtgtataaaaaattgtgtctacctatctttttcct 36957620  T

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Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 28307577 - 28307493
Alignment:
Q  8 tgatgtgaaattactaaaatactcctaacacgtgagg-tgtacatgggaggtgtat-aaaaaaggtgtctacctatctttttcct 90  Q
    |||||| ||||||||||||||| | |||||  || || |||||||  ||||||||| ||||||| ||||||||||||||||||||    
T  28307577 tgatgtaaaattactaaaatacccttaacatatgggggtgtacataagaggtgtatgaaaaaagatgtctacctatctttttcct 28307493  T

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Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 31148399 - 31148483
Alignment:
Q  8 tgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaaag-gtgtctacctatctttttccta 91  Q
    |||||| ||||||||||||||  |||||||  || |||||  ||  ||||||||| |||||| ||||||||||||||||||||||    
T  31148399 tgatgtaaaattactaaaataagcctaacatatggggtgtgtataagaggtgtatgaaaaagagtgtctacctatctttttccta 31148483  T

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Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 355
Target Start/End: Complemental strand, 10612432 - 10612389
Alignment:
Q  312 gtccatctccggagaatatatcgactgtaatttccttgattaat 355  Q
    ||||||||||||||||||| |||| |||||||||||||| ||||    
T  10612432 gtccatctccggagaatatttcgagtgtaatttccttgactaat 10612389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 7699958 - 7699882
Alignment:
Q  15 aaattactaaaatactcctaacacgtga-ggtgtacatgggaggtgtataaaaaagg-tgtctacctatctttttcc 89  Q
    ||||||||||||||| | |||||| ||| |||||| ||  ||||||||| ||||||| ||| |||||||||||||||    
T  7699958 aaattactaaaatacccataacacatgaaggtgtatataagaggtgtatgaaaaagggtgtttacctatctttttcc 7699882  T

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Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 7700156 - 7700080
Alignment:
Q  15 aaattactaaaatactcctaacacgtga-ggtgtacatgggaggtgtataaaaaagg-tgtctacctatctttttcc 89  Q
    ||||||||||||||| | |||||| ||| |||||| ||  ||||||||| ||||||| ||| |||||||||||||||    
T  7700156 aaattactaaaatacccataacacatgaaggtgtatataagaggtgtatgaaaaagggtgtttacctatctttttcc 7700080  T

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Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 7700354 - 7700278
Alignment:
Q  15 aaattactaaaatactcctaacacgtga-ggtgtacatgggaggtgtataaaaaagg-tgtctacctatctttttcc 89  Q
    ||||||||||||||| | |||||| ||| |||||| ||  ||||||||| ||||||| ||| |||||||||||||||    
T  7700354 aaattactaaaatacccataacacatgaaggtgtatataagaggtgtatgaaaaagggtgtttacctatctttttcc 7700278  T

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Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 7700552 - 7700476
Alignment:
Q  15 aaattactaaaatactcctaacacgtga-ggtgtacatgggaggtgtataaaaaagg-tgtctacctatctttttcc 89  Q
    ||||||||||||||| | |||||| ||| |||||| ||  ||||||||| ||||||| ||| |||||||||||||||    
T  7700552 aaattactaaaatacccataacacatgaaggtgtatataagaggtgtatgaaaaagggtgtttacctatctttttcc 7700476  T

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Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 26972285 - 26972201
Alignment:
Q  8 tgatgtgaaattactaaaatactcctaacacgtgagg-tgtacatgggaggtgtataaaaaagg-tgtctacctatctttttcct 90  Q
    |||||| |||||||| |||||| ||||| || || || |||||||  || |||||| ||||||| ||||||||||||||||||||    
T  26972285 tgatgtaaaattactcaaatacccctaatacatgggggtgtacataagaagtgtatgaaaaagggtgtctacctatctttttcct 26972201  T

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Target: chr6 (Bit Score: 70; Significance: 3e-31; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 4 - 88
Target Start/End: Original strand, 14023039 - 14023124
Alignment:
Q  4 gatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaaa-ggtgtctacctatctttttc 88  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  14023039 gatgtgatgtgaaattactaaaatacccctaacacatgaggtgtacatgggaggtgtataaaaaagggtgtctacctatctttttc 14023124  T

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Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 24208546 - 24208636
Alignment:
Q  1 gaggatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaaagg-tgtctacctatctttttcct 90  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||| ||| ||||||||||||||||| ||||||||||||||||||||    
T  24208546 gaggatgtgatgtgaaattactaaaatacccctaacacatgaggtgtaaatgagaggtgtataaaaaaggatgtctacctatctttttcct 24208636  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 431 - 476
Target Start/End: Original strand, 126868 - 126913
Alignment:
Q  431 aggaattcaagctaaaatatgggatattgacactaggtccatgcac 476  Q
    ||||||||||| ||||||||||||||||||||| | ||||||||||    
T  126868 aggaattcaagttaaaatatgggatattgacaccaagtccatgcac 126913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 3118129 - 3118045
Alignment:
Q  8 tgatgtgaaattactaaaatactcctaacacgtgag-gtgtacatgggaggtgtataaaaaagg-tgtctacctatctttttcct 90  Q
    |||||| ||||||||||||||| ||||| || || | ||||||||  ||| ||||| ||||||| ||||||||||||||||||||    
T  3118129 tgatgtaaaattactaaaatacccctaatacatgggagtgtacataagagatgtatgaaaaaggatgtctacctatctttttcct 3118045  T

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Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 6376327 - 6376236
Alignment:
Q  1 gaggatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaaagg-tgtctacctatctttttccta 91  Q
    |||||||||||||||||||||||||||||  ||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  6376327 gaggatgtgatgtgaaattactaaaatacctctaacacatgagatgtacatgggaggtgtataaaaaaggatgtctacctatctttttccta 6376236  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 16089930 - 16090019
Alignment:
Q  8 tgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtat-aaaaaaggtgtctacctatctttttcctatatga 96  Q
    |||||| ||||||||||||||| |||||||| || |||||||||  ||||||||| ||||||||||||||||||||||||||||| ||||    
T  16089930 tgatgtaaaattactaaaatacccctaacacatggggtgtacataagaggtgtatgaaaaaaggtgtctacctatctttttcctaaatga 16090019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 5 - 94
Target Start/End: Original strand, 36315667 - 36315758
Alignment:
Q  5 atgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtat-aaaaaagg-tgtctacctatctttttcctatat 94  Q
    |||||||||||||| | |||||||| ||| |||| ||||||||||||  ||||||||| |||||||| ||||||||||||||||||||||||    
T  36315667 atgtgatgtgaaatgattaaaatacccctgacacatgaggtgtacataagaggtgtatcaaaaaaggatgtctacctatctttttcctatat 36315758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 37498945 - 37498859
Alignment:
Q  8 tgatgtgaaattactaaaatactcctaacacgtgagg-tgtacatgggaggtgtataaaaaagg-tgtctacctatctttttcctat 92  Q
    |||||| ||||||||||||||| |||||||| || || |||||||  ||||||||||||||||| ||||||||||||||||||||||    
T  37498945 tgatgtaaaattactaaaatacccctaacacatggggatgtacataagaggtgtataaaaaagggtgtctacctatctttttcctat 37498859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 44958222 - 44958307
Alignment:
Q  8 tgatgtgaaattactaaaatactcctaacacgtga-ggtgtacatgggaggtgtataaaaaagg-tgtctacctatctttttccta 91  Q
    |||||| ||||||||||||||| |||||||| ||| ||| |||||  ||||||||| ||||||| |||||||||||||||||||||    
T  44958222 tgatgtaaaattactaaaatacccctaacacatgagggtatacataagaggtgtatgaaaaaggatgtctacctatctttttccta 44958307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 3830979 - 3830900
Alignment:
Q  8 tgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaaagg-tgtctacctatctttt 86  Q
    |||||| |||||||||| |||| |||||||| || |||||||||  ||||||||| ||||||| ||||||||||||||||    
T  3830979 tgatgtaaaattactaatatacccctaacacatggggtgtacataagaggtgtatgaaaaagggtgtctacctatctttt 3830900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 33732678 - 33732761
Alignment:
Q  8 tgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtat-aaaaaaggtgtctacctatctttttcct 90  Q
    |||||| ||||||||||||||| ||||| |  || |||||||||  ||||||||| ||||| ||||||||||||||||||||||    
T  33732678 tgatgtaaaattactaaaatacccctaatatatggggtgtacataagaggtgtatgaaaaagggtgtctacctatctttttcct 33732761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 89
Target Start/End: Original strand, 41188874 - 41188961
Alignment:
Q  4 gatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtata--aaaaaggtgtctacctatctttttcc 89  Q
    |||||||||| ||||||||||||||   || |||| || | |||||||| ||||||||||  |||| ||||||| |||||||||||||    
T  41188874 gatgtgatgtaaaattactaaaatatctctgacacatgtgatgtacatgagaggtgtataacaaaagggtgtctgcctatctttttcc 41188961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 24137181 - 24137153
Alignment:
Q  1 gaggatgtgatgtgaaattactaaaatac 29  Q
    |||||||||||||||||||||||||||||    
T  24137181 gaggatgtgatgtgaaattactaaaatac 24137153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 4 - 89
Target Start/End: Original strand, 33726117 - 33726203
Alignment:
Q  4 gatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaaa-ggtgtctacctatctttttcc 89  Q
    |||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  33726117 gatgtgatgtgaaattactaaaatacccctaacacatgaagtgtacatgggaggtgtataaaaaagggtgtctacctatctttttcc 33726203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 18184669 - 18184745
Alignment:
Q  15 aaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaaagg-tgtctacctatctttttcct 90  Q
    ||||||||||||||| |||||||| ||||||||||||   |||||||| ||||||| ||||||||||||||||||||    
T  18184669 aaattactaaaatacccctaacacatgaggtgtacataaaaggtgtatgaaaaaggatgtctacctatctttttcct 18184745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 12665454 - 12665539
Alignment:
Q  8 tgatgtgaaattactaaaatactcctaacacgtga-ggtgtacatgggaggtgtataaaaaagg-tgtctacctatctttttccta 91  Q
    |||||| ||||||||||||||| |||||||| ||| ||| |||||  ||||||||  ||||||| |||||||||||||||||||||    
T  12665454 tgatgtaaaattactaaaatacccctaacacatgagggtatacataagaggtgtacgaaaaaggatgtctacctatctttttccta 12665539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 26295843 - 26295900
Alignment:
Q  193 catgactacaactatgatctttcaacaatctgtttctttattcattcatgtgttgcat 250  Q
    ||||||||||| ||||||| |||  |||||||||||| ||||||||||| ||||||||    
T  26295843 catgactacaagtatgatcattcttcaatctgtttctctattcattcatatgttgcat 26295900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 26309100 - 26309157
Alignment:
Q  193 catgactacaactatgatctttcaacaatctgtttctttattcattcatgtgttgcat 250  Q
    ||||||||||| ||||||| |||  |||||||||||| ||||||||||| ||||||||    
T  26309100 catgactacaagtatgatcattcttcaatctgtttctctattcattcatatgttgcat 26309157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 26343161 - 26343218
Alignment:
Q  193 catgactacaactatgatctttcaacaatctgtttctttattcattcatgtgttgcat 250  Q
    ||||||||||| ||||||| |||  |||||||||||| ||||||||||| ||||||||    
T  26343161 catgactacaagtatgatcattcttcaatctgtttctctattcattcatatgttgcat 26343218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 88
Target Start/End: Complemental strand, 38845109 - 38845023
Alignment:
Q  4 gatgtgatgtgaaattactaaaatactcctaacacgtga-ggtgtacatgggaggtgtataaaaaa-ggtgtctacctatctttttc 88  Q
    ||||||||| |||||||||||||||  |||||||| | | ||||||||||   ||||||||||||| ||||| || |||||||||||    
T  38845109 gatgtgatgagaaattactaaaataaccctaacacataagggtgtacatgaagggtgtataaaaaatggtgtttatctatctttttc 38845023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 36189332 - 36189408
Alignment:
Q  15 aaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaaagg-tgtctacctatctttttccta 91  Q
    |||||| |||||||| |||||||  || |||||||||  | ||||||| ||||||| |||||||||||||||||||||    
T  36189332 aaattattaaaatacccctaacatatg-ggtgtacataagtggtgtatgaaaaagggtgtctacctatctttttccta 36189408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 10203780 - 10203856
Alignment:
Q  15 aaattactaaaatactcctaacacgtgagg-tgtacatgggaggtgtataaaaaagg-tgtctacctatctttttcc 89  Q
    ||||||||||||||  ||||| || ||||| |||||||  ||| ||||| ||||||| |||||||||||||||||||    
T  10203780 aaattactaaaatatccctaatacatgagggtgtacataagagatgtatgaaaaagggtgtctacctatctttttcc 10203856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 6e-26; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 39467190 - 39467098
Alignment:
Q  1 gaggatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaaa-ggtgtctacctatctttttcctat 92  Q
    ||||||||||| ||||||||||||||||  | |||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  39467190 gaggatgtgatatgaaattactaaaatatccataacacatgaggtgtacatgggaggtgtataaaaaagggtgtgtacctatctttttcctat 39467098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 51339865 - 51339781
Alignment:
Q  8 tgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtat-aaaaaaggtgtctacctatctttttccta 91  Q
    |||||| |||||||||||||||  ||||||| ||| ||||||||  ||||||||| ||||| |||||||||||||||||||||||    
T  51339865 tgatgtaaaattactaaaatacctctaacacatgatgtgtacataagaggtgtatgaaaaagggtgtctacctatctttttccta 51339781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 29472918 - 29473003
Alignment:
Q  8 tgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaaagg-tgtctacctatctttttcctat 92  Q
    |||||| ||||||||||||||| |||||||| || ||||| |||  | ||||||| ||||||| ||||||||||||||||||||||    
T  29472918 tgatgtaaaattactaaaatacccctaacacatggggtgtgcataagtggtgtatgaaaaaggatgtctacctatctttttcctat 29473003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 21559670 - 21559753
Alignment:
Q  8 tgatgtgaaattactaaaatactcctaacacgt-gaggtgtacatgggaggtgtat-aaaaaaggtgtctacctatctttttcc 89  Q
    |||||| ||||||||||||||| |||||||| | | |||||||||  ||||||||| ||||| |||||||| ||||||||||||    
T  21559670 tgatgtaaaattactaaaatacccctaacacatgggggtgtacataagaggtgtatgaaaaatggtgtctatctatctttttcc 21559753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 89
Target Start/End: Original strand, 38231398 - 38231484
Alignment:
Q  5 atgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtat-aaaaaagg-tgtctacctatctttttcc 89  Q
    |||| ||||||||| |||||| ||| ||| |||| || |||||||||  ||||||||| |||||||| |||||||||||||||||||    
T  38231398 atgtaatgtgaaatgactaaactacccctgacacatggggtgtacataagaggtgtatcaaaaaaggatgtctacctatctttttcc 38231484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 30735578 - 30735494
Alignment:
Q  8 tgatgtgaaattactaaaa-tactcctaacacgtgaggtgtacatgggaggtgtataaaaaagg-tgtctacctatctttttcct 90  Q
    |||||| |||||||||||| ||| |||||||| ||  ||||||||  | ||||||| ||||||| ||||||||||||||||||||    
T  30735578 tgatgttaaattactaaaaatacccctaacacatggagtgtacataagtggtgtatgaaaaagggtgtctacctatctttttcct 30735494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 39072360 - 39072278
Alignment:
Q  8 tgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaaag-gtgtctacctatctttttcc 89  Q
    ||||||||  |||||||||||| | | |||| || |||||||||   || |||||||||||| ||||||||||||||||||||    
T  39072360 tgatgtgatgttactaaaatacccttgacacatggggtgtacatcaaagatgtataaaaaagtgtgtctacctatctttttcc 39072278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 19258758 - 19258674
Alignment:
Q  4 gatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaaa-ggtgtctacctatcttttt 87  Q
    ||||||||||||||||| ||||||| ||||||||| || |||||||||| ||| ||||||||||| |||||||||||||||||||    
T  19258758 gatgtgatgtgaaattattaaaatattcctaacacatggggtgtacatgagagatgtataaaaaagggtgtctacctatcttttt 19258674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 28647458 - 28647545
Alignment:
Q  4 gatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaaa-ggtgtctacctatctttttcct 90  Q
    ||||||||||||||||| ||||||| ||||||||| || | |||||||| ||| ||||||||||| ||||||||||||||||||||||    
T  28647458 gatgtgatgtgaaattattaaaatattcctaacacatgggatgtacatgagagatgtataaaaaagggtgtctacctatctttttcct 28647545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 34307220 - 34307136
Alignment:
Q  8 tgatgtgaaattactaaaatactcctaacacgtgag-gtgtacatgggaggtgtat-aaaaaaggtgtctacctatctttttcct 90  Q
    |||||| ||||||||||||||| |||||||| || | ||||||||  ||||||||| ||||||||||||||||||||||||||||    
T  34307220 tgatgtaaaattactaaaatacccctaacacatgggagtgtacataagaggtgtatgaaaaaaggtgtctacctatctttttcct 34307136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 2509133 - 2509217
Alignment:
Q  8 tgatgtgaaattactaaaatactcctaacacgtgagg-tgtacatgggaggtgtat-aaaaaaggtgtctacctatctttttcct 90  Q
    |||||| ||||||||||||||  ||||| || ||||| |||||||  ||||||||| |||||| |||||||||||||||||||||    
T  2509133 tgatgtaaaattactaaaatatccctaatacatgagggtgtacataagaggtgtatgaaaaaaagtgtctacctatctttttcct 2509217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 39249943 - 39249864
Alignment:
Q  10 atgtgaaattactaaaatactcctaacacgtgagg-tgtacatgggaggtgtat-aaaaaaggtgtctacctatcttttt 87  Q
    |||| ||||||||||||||| ||||| || || || |||||||  ||||||||| |||||||||||||||||||||||||    
T  39249943 atgtaaaattactaaaatacccctaatacatgggggtgtacataagaggtgtatgaaaaaaggtgtctacctatcttttt 39249864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 21391037 - 21390955
Alignment:
Q  8 tgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtat-aaaaaaggtgtctacctatctttttcc 89  Q
    |||||| ||||||||||||||| |||||||| ||||||||||||   |||||||| ||||| |||||||||||||||||||||    
T  21391037 tgatgtaaaattactaaaatacccctaacacatgaggtgtacataaaaggtgtatgaaaaagggtgtctacctatctttttcc 21390955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 44275815 - 44275898
Alignment:
Q  8 tgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtat-aaaaaaggtgtctacctatctttttcct 90  Q
    |||||| ||||||||||||||| |||||||| || |||||||||  ||||||||| ||||| |||||||| |||||||||||||    
T  44275815 tgatgtaaaattactaaaatacccctaacacatggggtgtacataagaggtgtatgaaaaagggtgtctatctatctttttcct 44275898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 52191286 - 52191220
Alignment:
Q  4 gatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaaagg 70  Q
    ||||||||| ||||||||||||||||||||||||  || |||||||| | |||||||||||||||||    
T  52191286 gatgtgatgcgaaattactaaaatactcctaacatatggggtgtacacgagaggtgtataaaaaagg 52191220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 49243924 - 49244006
Alignment:
Q  8 tgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaaagg-tgtctacctatctttttcc 89  Q
    |||||| ||||||||||||||| ||||| || ||  ||||||||  ||||||||| ||||||| ||||||| |||||||||||    
T  49243924 tgatgtaaaattactaaaatacccctaatacatggagtgtacataagaggtgtatgaaaaaggatgtctacatatctttttcc 49244006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 6112739 - 6112824
Alignment:
Q  8 tgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaaag-gtgtctacctatctttttcctat 92  Q
    |||||| |||||||| |||||| ||||| || ||  ||||||||  || |||||| |||||| |||||||||||||||||||||||    
T  6112739 tgatgtaaaattactcaaatacccctaatacatggagtgtacataagaagtgtatgaaaaagagtgtctacctatctttttcctat 6112824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 7217874 - 7217958
Alignment:
Q  8 tgatgtgaaattactaaaatactcctaacacgtgagg-tgtacatgggaggtgtataaaaaagg-tgtctacctatctttttcct 90  Q
    |||||| |||||||||||||||   |||||| ||||| |||||||  ||||||||| ||||||| ||| ||||||||||||||||    
T  7217874 tgatgtaaaattactaaaatacctataacacatgagggtgtacataagaggtgtatgaaaaagggtgtttacctatctttttcct 7217958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 89
Target Start/End: Original strand, 46192465 - 46192551
Alignment:
Q  5 atgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaaa--ggtgtctacctatctttttcc 89  Q
    |||||||||||||| | |||||||| |||   || || |||||||||  ||||||||| |||||  |||||||||||||||||||||    
T  46192465 atgtgatgtgaaatgattaaaatacccctggtacatggggtgtacataagaggtgtatcaaaaaagggtgtctacctatctttttcc 46192551  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 35545021 - 35545102
Alignment:
Q  8 tgatgtgaaattactaaaa-tactcctaacacgtgaggtgtacatgggaggtgtataaaaaagg-tgtctacctatcttttt 87  Q
    |||||| |||||||||||| ||| |||||||| ||  ||||||||  | ||||||| ||||||| |||||||||||||||||    
T  35545021 tgatgtaaaattactaaaaatacccctaacacatggagtgtacataagtggtgtatgaaaaagggtgtctacctatcttttt 35545102  T

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Target: scaffold0043 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 87237 - 87160
Alignment:
Q  15 aaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtat-aaaaaaggtgtctacctatctttttccta 91  Q
    ||||||||||||||| |||||||| || |||||||||   |||||||| |||||||||||||||||||||||||||||    
T  87237 aaattactaaaatacccctaacacatggggtgtacataaaaggtgtatgaaaaaaggtgtctacctatctttttccta 87160  T

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Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 4 - 88
Target Start/End: Complemental strand, 4300629 - 4300544
Alignment:
Q  4 gatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaaagg-tgtctacctatctttttc 88  Q
    ||||||||||||||||| |||||||  |||||||| ||||||||||||| ||| ||||||||||||| |||||| | |||||||||    
T  4300629 gatgtgatgtgaaattattaaaatatccctaacacatgaggtgtacatgagagatgtataaaaaaggatgtctatcaatctttttc 4300544  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 27553455 - 27553372
Alignment:
Q  8 tgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtat-aaaaaaggtgtctacctatctttttccta 91  Q
    |||||| |||||||||||||||||||||||| |  |||||||||  ||||||||| ||||| |||||||| |||| |||||||||    
T  27553455 tgatgtaaaattactaaaatactcctaacacatagggtgtacataagaggtgtatgaaaaagggtgtctatctat-tttttccta 27553372  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 31800667 - 31800750
Alignment:
Q  8 tgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtat-aaaaaaggtgtctacctatctttttcct 90  Q
    |||||| ||||||||||||||| |||||||  || ||||||||   ||||||||| ||||| ||||||| ||||||||||||||    
T  31800667 tgatgtaaaattactaaaatacccctaacatatggggtgtacacaagaggtgtatgaaaaagggtgtctgcctatctttttcct 31800750  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 19124554 - 19124474
Alignment:
Q  8 tgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaa-aggtgtctacctatcttttt 87  Q
    |||||| |||||||||||||||   | ||||||||  |||| ||| ||||||||||||||  |||||||||||||||||||    
T  19124554 tgatgtaaaattactaaaatacctttgacacgtgaactgtatatgagaggtgtataaaaattggtgtctacctatcttttt 19124474  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 43 - 90
Target Start/End: Complemental strand, 40887988 - 40887940
Alignment:
Q  43 ggtgtacatgggaggtgtataaaaaagg-tgtctacctatctttttcct 90  Q
    |||||||||  ||||||||| ||||||| ||||||||||||||||||||    
T  40887988 ggtgtacataagaggtgtatgaaaaagggtgtctacctatctttttcct 40887940  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 42683708 - 42683792
Alignment:
Q  8 tgatgtgaaattactaaaatactcctaacacgt-gaggtgtacatgggaggtgtataaaaaagg-tgtctacctatctttttcct 90  Q
    |||||| ||||||||||||||| ||||| |  | | |||||||||  ||||||||| ||||||| |||||| |||||||||||||    
T  42683708 tgatgtaaaattactaaaatacccctaatatatgggggtgtacataagaggtgtatgaaaaaggatgtctatctatctttttcct 42683792  T

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Target: scaffold0438 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 13322 - 13379
Alignment:
Q  193 catgactacaactatgatctttcaacaatctgtttctttattcattcatgtgttgcat 250  Q
    ||||||||||| ||||||| |||  |||||||||||| ||||||||||| ||||||||    
T  13322 catgactacaagtatgatcattcttcaatctgtttctctattcattcatatgttgcat 13379  T

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Target: scaffold0250 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 325
Target Start/End: Complemental strand, 4568 - 4513
Alignment:
Q  272 gtcttctgttcttttaacctctgctaaatcttggtttgcag--tccatctccggag 325  Q
    ||||| || |||||||| || ||||||||||||||||||||  |||||||||||||    
T  4568 gtcttatgctcttttaagctttgctaaatcttggtttgcagtctccatctccggag 4513  T

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