View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20128_high_9 (Length: 286)
Name: NF20128_high_9
Description: NF20128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20128_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 41007087 - 41006813
Alignment:
| Q |
1 |
taaattacgtataccatgtacatacatacattaaggaaaaaggtaggcatgaacatattgactaattaaggtttgaaaaagtttgtttactaattaaatt |
100 |
Q |
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| T |
41007087 |
taaattacgtataccatgtacatacatacattaaggaaaaagctaggcatgaacatattgactaattaaggtttgaaaaagtttgtttactaattaaatt |
41006988 |
T |
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| Q |
101 |
aatta----ccaaaatgtgagttggtattgtgattggtctgctaaggttggtgaagaaataatagtaatattgagtgggaagaggatttgaaatgggtat |
196 |
Q |
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| T |
41006987 |
agttagttaccaaaatgtgagttggtattgtgattggtctgctaaggttggtgaagaaataatagtaatattgagtgggaagaggatttgaaatgggtat |
41006888 |
T |
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| Q |
197 |
atgtgccgaaataagtgaaggcatgaattatggcaatgacagagaggaattgggtcaagaaggcaacaaaagaac |
271 |
Q |
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| T |
41006887 |
atgtgccgaaataagtgaaggcatgaattatggcaatgacagagaggaattgggtcaagaaggcaacaaaagaac |
41006813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 48 - 234
Target Start/End: Original strand, 55004866 - 55005053
Alignment:
| Q |
48 |
catgaacatattgactaattaaggtttgaaaaagtttgtttactaattaaatt----aattaccaaaatgtgagttggtattgtgattggtctgctaagg |
143 |
Q |
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| T |
55004866 |
catgaacatattgactaattaaggtttgaaaaagtgtgtttactaattaaatttgttagttaccaaaatgttagttagtattgtgatttgtctgctaagg |
55004965 |
T |
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| Q |
144 |
ttggtgaagaaataatagtaatattgagtgggaagaggatttgaaatgggtatatgtgccgaaataagtgaaggcatgaattatggcaatg |
234 |
Q |
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| T |
55004966 |
taggtgaagaaacaatg---atattgagtgggaagatgatttgaaatgaggatatgtgcctaaataagtgaaggcataaattatggcaatg |
55005053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 55004798 - 55004839
Alignment:
| Q |
1 |
taaattacgtataccatgtacatacatacattaaggaaaaag |
42 |
Q |
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| T |
55004798 |
taaattacgtataccatgcacgtacatacattaaggaaaaag |
55004839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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