View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20128_low_1 (Length: 727)
Name: NF20128_low_1
Description: NF20128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20128_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 489; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 2 - 542
Target Start/End: Complemental strand, 36084438 - 36083898
Alignment:
| Q |
2 |
ggcaacaccaaaaagatcatatgatcagcaacaacaactacagattgtgcaacatgtgaagaattcaggaatgattaacaacatccagagtccaagaaga |
101 |
Q |
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| T |
36084438 |
ggcaacaccaaaaagatcatatgatcagcaacaacaactacagattgtgcaacatgtgaagaattcaggaatgattaacaacatccagagtccaagaaga |
36084339 |
T |
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| Q |
102 |
gatgaaaaggaagaggaaatgtcaagatcagttctagcaatgtttagagaaaaggaagaagaaattgagagaagaaagttggaggttagagataaggttc |
201 |
Q |
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| T |
36084338 |
gatgaaaaggaagaggaaatgtcaagatcagttctagcaatgtttagagaaaaggaagaagaaattgagagaagaaagttggaggttagagataaggttc |
36084239 |
T |
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| Q |
202 |
atgctcatctcggtcgagtcgaaaaggaaacaaagcgattggctgagataagagaagtaagtccaataaacaaacactgaatttgagctagattgtttat |
301 |
Q |
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| T |
36084238 |
atgctcatctcggtcgagtcgaaaaggaaacaaagcgattggctgagataagagaagtaagtccaataaacaaacactgaatttgagctagattgtttat |
36084139 |
T |
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| Q |
302 |
aatgttccattgtttgtttggtttttatgcatttataaatctttgtgcaaagtttcaaaatcatggtcgcggccacgcagtaatctttgatattgtagaa |
401 |
Q |
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| T |
36084138 |
aatgttccattgtttgtttggtttttatgcatttataaatctttgtgcaaagtttcaaaatcatggtcgcggccacgcattaatatttgatattgtagaa |
36084039 |
T |
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| Q |
402 |
aatcacggataaatacaacttgtgtttccgcaatagcgatcacaatttgatgtccgtgacaatataacgttgaaaacgctgctatattttccgttgcaga |
501 |
Q |
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| T |
36084038 |
aattgcggataaatacaacttgtgtttccgcgatagcgatcacaatttgatgttggtgacaatataacgttgaaatcacggctatatttgccgttgcaga |
36083939 |
T |
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| Q |
502 |
ccgttttttaaaaccttgaccaagatttaaggattagcttt |
542 |
Q |
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| T |
36083938 |
ccattttttaaaaccttgaccaagatttaaggactagcttt |
36083898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 636 - 727
Target Start/End: Complemental strand, 36083809 - 36083718
Alignment:
| Q |
636 |
aaaattattcacatttattatattcaagattttttcatccattataaataatgtttgtttgagaaattgcataggagattgagggtttcaca |
727 |
Q |
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| T |
36083809 |
aaaattattcacatttgttatattcaagattttttcatccattataaataatctttgtttgagaaattgcataggagattgagggtttcaca |
36083718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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