View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20128_low_3 (Length: 488)

Name: NF20128_low_3
Description: NF20128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20128_low_3
NF20128_low_3
[»] chr3 (2 HSPs)
chr3 (50-273)||(42431530-42431753)
chr3 (394-470)||(42431938-42432014)
[»] chr8 (4 HSPs)
chr8 (4-50)||(24519473-24519519)
chr8 (4-48)||(21268508-21268552)
chr8 (4-47)||(4876814-4876857)
chr8 (4-47)||(4879142-4879185)
[»] scaffold0008 (1 HSPs)
scaffold0008 (4-47)||(73069-73112)
[»] chr4 (5 HSPs)
chr4 (4-47)||(42468758-42468801)
chr4 (4-47)||(42471087-42471130)
chr4 (4-47)||(45161971-45162014)
chr4 (4-47)||(45166863-45166906)
chr4 (17-47)||(50856063-50856093)
[»] chr7 (7 HSPs)
chr7 (4-47)||(3932507-3932550)
chr7 (4-47)||(3934746-3934789)
chr7 (4-47)||(16497157-16497200)
chr7 (4-47)||(16497187-16497230)
chr7 (18-47)||(3932537-3932566)
chr7 (18-47)||(3934776-3934805)
chr7 (18-47)||(8733827-8733856)
[»] chr5 (1 HSPs)
chr5 (4-47)||(37207634-37207677)
[»] chr6 (1 HSPs)
chr6 (17-47)||(21199141-21199171)


Alignment Details
Target: chr3 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 50 - 273
Target Start/End: Original strand, 42431530 - 42431753
Alignment:
Q  50 tcagaatcagcgtactcgtccacctcagaagagcaaaaatcaccctccggcaaaccctcaaccgtagcataaaaagtgtggaaaacgtagaaaccgggca 149  Q
    ||||||||| | ||||||||||||||| | | ||||||||||||||||||||||||||| || ||||||   ||| | || ||||| ||  |||| || |    
T  42431530 tcagaatcatcatactcgtccacctcatacgtgcaaaaatcaccctccggcaaaccctccactgtagcactcaaaatatgcaaaacataacaaccaggta 42431629  T
Q  150 aaccaggataagtctccgaattccgctcctacaccctcatttcatacgaattgcgatcaatcgtcaccatatcacaaacctcccttttcgcgtcgattac 249  Q
    |||||||||||| | | ||||||| ||||| ||| ||||| |||||||||||  |||||||| |||| |||||||||| |||  ||| | |||  || ||    
T  42431630 aaccaggataagaccctgaattcctctcctccactctcatctcatacgaattcggatcaatcatcacaatatcacaaatctctgtttccccgttaatcac 42431729  T
Q  250 ggagccaagctcttccttaatccc 273  Q
     || ||||||||||||||||||||    
T  42431730 agacccaagctcttccttaatccc 42431753  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 394 - 470
Target Start/End: Original strand, 42431938 - 42432014
Alignment:
Q  394 gaggtttctccctcggaaagttcgagccagagattgtgaacgttcttggttccaggcttaacgccccacgtggcgaa 470  Q
    |||||||||||||  || ||||| ||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||    
T  42431938 gaggtttctccctgagatagttcaagccaaagattgtgaacgttcttcgttccgggcttaacaccccacgtggcgaa 42432014  T

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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 24519473 - 24519519
Alignment:
Q  4 attattcttcaccattctagagacttccatattattcttcatcaggt 50  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  24519473 attattcttcaccattctagagacttccatattattcttcatcaggt 24519519  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 21268508 - 21268552
Alignment:
Q  4 attattcttcaccattctagagacttccatattattcttcatcag 48  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  21268508 attattcttcaccattctagagacttccatattattcttcatcag 21268552  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 4876857 - 4876814
Alignment:
Q  4 attattcttcaccattctagagacttccatattattcttcatca 47  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  4876857 attattcttcaccattctagagacttccatattattcttcatca 4876814  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 4879185 - 4879142
Alignment:
Q  4 attattcttcaccattctagagacttccatattattcttcatca 47  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  4879185 attattcttcaccattctagagacttccatattattcttcatca 4879142  T

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Target: scaffold0008 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 73112 - 73069
Alignment:
Q  4 attattcttcaccattctagagacttccatattattcttcatca 47  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  73112 attattcttcaccattctagagacttccatattattcttcatca 73069  T

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Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 42468758 - 42468801
Alignment:
Q  4 attattcttcaccattctagagacttccatattattcttcatca 47  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  42468758 attattcttcaccattctagagacttccatattattcttcatca 42468801  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 42471087 - 42471130
Alignment:
Q  4 attattcttcaccattctagagacttccatattattcttcatca 47  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  42471087 attattcttcaccattctagagacttccatattattcttcatca 42471130  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 45162014 - 45161971
Alignment:
Q  4 attattcttcaccattctagagacttccatattattcttcatca 47  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  45162014 attattcttcaccattctagagacttccatattattcttcatca 45161971  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 45166906 - 45166863
Alignment:
Q  4 attattcttcaccattctagagacttccatattattcttcatca 47  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  45166906 attattcttcaccattctagagacttccatattattcttcatca 45166863  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 47
Target Start/End: Original strand, 50856063 - 50856093
Alignment:
Q  17 attctagagacttccatattattcttcatca 47  Q
    |||||||||||||||||||||||||||||||    
T  50856063 attctagagacttccatattattcttcatca 50856093  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 3932550 - 3932507
Alignment:
Q  4 attattcttcaccattctagagacttccatattattcttcatca 47  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  3932550 attattcttcatcattctagagacttccatattattcttcatca 3932507  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 3934789 - 3934746
Alignment:
Q  4 attattcttcaccattctagagacttccatattattcttcatca 47  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  3934789 attattcttcatcattctagagacttccatattattcttcatca 3934746  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 16497157 - 16497200
Alignment:
Q  4 attattcttcaccattctagagacttccatattattcttcatca 47  Q
    ||||||||| | ||||||||||||||||||||||||||| ||||    
T  16497157 attattcttgatcattctagagacttccatattattcttgatca 16497200  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 16497187 - 16497230
Alignment:
Q  4 attattcttcaccattctagagacttccatattattcttcatca 47  Q
    ||||||||| | ||||||||||||||||||||||||||| ||||    
T  16497187 attattcttgatcattctagagacttccatattattcttgatca 16497230  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 3932566 - 3932537
Alignment:
Q  18 ttctagagacttccatattattcttcatca 47  Q
    ||||||||||||||||||||||||||||||    
T  3932566 ttctagagacttccatattattcttcatca 3932537  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 3934805 - 3934776
Alignment:
Q  18 ttctagagacttccatattattcttcatca 47  Q
    ||||||||||||||||||||||||||||||    
T  3934805 ttctagagacttccatattattcttcatca 3934776  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 8733827 - 8733856
Alignment:
Q  18 ttctagagacttccatattattcttcatca 47  Q
    ||||||||||||||||||||||||||||||    
T  8733827 ttctagagacttccatattattcttcatca 8733856  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 37207677 - 37207634
Alignment:
Q  4 attattcttcaccattctagagacttccatattattcttcatca 47  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  37207677 attattcttcatcattctagagacttccatattattcttcatca 37207634  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 47
Target Start/End: Complemental strand, 21199171 - 21199141
Alignment:
Q  17 attctagagacttccatattattcttcatca 47  Q
    |||||||||||||||||||||||||||||||    
T  21199171 attctagagacttccatattattcttcatca 21199141  T

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