View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20128_low_4 (Length: 482)
Name: NF20128_low_4
Description: NF20128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20128_low_4 |
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| [»] chr1 (7 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Complemental strand, 4872662 - 4872199
Alignment:
| Q |
1 |
tttaaattgaccgaggatgcaatagccatagattagatagattacgatatatagtagaaccaaagctgatattcttagcagtcatttcagaataaaaatc |
100 |
Q |
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| T |
4872662 |
tttaaattgaccgaggatgcaatagccatagattagatagattacgatatatagtagaaccacagctgatattcttagcagtcatttcagaataaaaatc |
4872563 |
T |
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| Q |
101 |
ataggcttgatgtacgtacaagtctatctttgcacagcctgcatattatgtacctgtagaacatattcgtgaaggctgttaagatccatctctatctttc |
200 |
Q |
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| T |
4872562 |
ataggcttgatgtacgtacaagtctatctttgcacagcctgcgtattatgtacctgtagaacatattcgtgaaggctgttaagatcca------------ |
4872475 |
T |
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| Q |
201 |
tgaacaagtggatggctcttttagtttcacctatctcacataagctaccgactagatgatgataagtttacagctcaaccgaaaaccaccctttaggaag |
300 |
Q |
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| T |
4872474 |
------agtggatggctcttttagtttcacctatctcacataagctaccgactagatgatgataagtttacagctcaaccgaaaaccaccctttaggaag |
4872381 |
T |
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| Q |
301 |
atgtaattgtgtaagagcattgctttgtaaatgtggcctggggctaaaagacaacagaaaagatcatacatattggaagaactgggacgaagaccagcgt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
4872380 |
atgtaattgtgtaagagcattgctttgtaaatgtggcctggggctaaaagacaacagaaaagatcatacatatcggaagaactgggacgatgaccagcgt |
4872281 |
T |
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| Q |
401 |
tgatgattttgcggaaaagagagaaagctgaagagatgtgaccgtttttagcgtgacaagagatgaagattaaccaagtatt |
482 |
Q |
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| T |
4872280 |
tgatgattttgcggaaaagagagaaagctgaagagatgtgaccgtttttagcgtgacaagagatgaggattaaccaagtatt |
4872199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 38
Target Start/End: Original strand, 6326711 - 6326745
Alignment:
| Q |
4 |
aaattgaccgaggatgcaatagccatagattagat |
38 |
Q |
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| T |
6326711 |
aaattgaccgaggatgcaatagccatagattagat |
6326745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 28231626 - 28231589
Alignment:
| Q |
1 |
tttaaattgaccgaggatgcaatagccatagattagat |
38 |
Q |
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| T |
28231626 |
tttaaattgaccgaggatgcaataaccatagattagat |
28231589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 677263 - 677215
Alignment:
| Q |
82 |
tcatttcagaataaaaatcataggcttgatgtacgtacaagtctatctttgca |
134 |
Q |
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| T |
677263 |
tcatttcagaatataaatcataggcttgat----gtacaagtctatctttgca |
677215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 14508769 - 14508806
Alignment:
| Q |
1 |
tttaaattgaccgaggatgcaatagccatagattagat |
38 |
Q |
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| T |
14508769 |
tttaaattgaccgacgatgcaataaccatagattagat |
14508806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 28239199 - 28239162
Alignment:
| Q |
1 |
tttaaattgaccgaggatgcaatagccatagattagat |
38 |
Q |
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| T |
28239199 |
tttaaattgaccgaggatgcaataaccatagactagat |
28239162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 12535431 - 12535467
Alignment:
| Q |
1 |
tttaaattgaccgaggatgcaatagccatagattaga |
37 |
Q |
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| T |
12535431 |
tttaaattgaccggtgatgcaatagccatagattaga |
12535467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 9068598 - 9068561
Alignment:
| Q |
1 |
tttaaattgaccgaggatgcaatagccatagattagat |
38 |
Q |
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|||||||||||| | ||||||||||||||||||||||| |
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| T |
9068598 |
tttaaattgaccaacgatgcaatagccatagattagat |
9068561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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