View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20128_low_5 (Length: 477)
Name: NF20128_low_5
Description: NF20128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20128_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 14 - 461
Target Start/End: Original strand, 22364730 - 22365177
Alignment:
| Q |
14 |
tactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttggtgttctctgctaatctgctttcaaggttcatgcattca |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
22364730 |
tactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttcaaggttcatgcattca |
22364829 |
T |
|
| Q |
114 |
ccaagtgtaacacacttaggtgtgggcaaaagagcgttgaggtacatatgatgtactattgattttggtatttggtacaacaaaggtgatggtaagattg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22364830 |
ccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtgatggtaagattg |
22364929 |
T |
|
| Q |
214 |
aaggctttgttgatagtgattgggctggatctgttgatgattctaaaagcacaagtggttatgttttttcactttttagtggcgtattttcatggaattc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
22364930 |
aaggctttgttgatagtgattgggctggatctgttgatgattctaaaagcacaagtggttatgttttttcacttggtagtggtgtattttcatggaattc |
22365029 |
T |
|
| Q |
314 |
caaaaaataagatgtggttgctcaatcctcagctgaagctgagtatattggtactgcagctgcatcaaatcaagctatttggatcaaaaaggtattgagt |
413 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
22365030 |
caaaaaacaagatgtggttgctcaatcctcagctgaagctgagtatattgctgctgcagctgcatcaaatcaagctatttggataaaaaaggtattgagt |
22365129 |
T |
|
| Q |
414 |
gttctgaatcatgtacaagaggaaccaattgtgctatggtgtgacaac |
461 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22365130 |
gatctgaatcatgtacaagaggaaccaattgtgctatggtgtgacaac |
22365177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 284
Target Start/End: Original strand, 22134942 - 22135001
Alignment:
| Q |
225 |
gatagtgattgggctggatctgttgatgattctaaaagcacaagtggttatgttttttca |
284 |
Q |
| |
|
|||||||||||||||||| |||||||||||| || ||||| |||||||||||||||| |
|
|
| T |
22134942 |
gatagtgattgggctggaagtgttgatgattccaagagcacttctggttatgttttttca |
22135001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 384; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 14 - 461
Target Start/End: Original strand, 30048848 - 30049295
Alignment:
| Q |
14 |
tactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttggtgttctctgctaatctgctttcaaggttcatgcattca |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||| ||||||||||||||| |
|
|
| T |
30048848 |
tactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggttcatgcattca |
30048947 |
T |
|
| Q |
114 |
ccaagtgtaacacacttaggtgtgggcaaaagagcgttgaggtacatatgatgtactattgattttggtatttggtacaacaaaggtgatggtaagattg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30048948 |
ccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtgatggtaagattg |
30049047 |
T |
|
| Q |
214 |
aaggctttgttgatagtgattgggctggatctgttgatgattctaaaagcacaagtggttatgttttttcactttttagtggcgtattttcatggaattc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
30049048 |
aaggctttgttgatagtgattgggctggatctattgatgattctaaaagcacaagtggttatgttttttcacttggtagtggtgtattttcatggaattc |
30049147 |
T |
|
| Q |
314 |
caaaaaataagatgtggttgctcaatcctcagctgaagctgagtatattggtactgcagctgcatcaaatcaagctatttggatcaaaaaggtattgagt |
413 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30049148 |
caaaaaacaagatgtggttgctcaatcctcagctgaagctgagtatattgctgctgcagctgcatcaaatcaagctatttggatcaaaaaggtattgagt |
30049247 |
T |
|
| Q |
414 |
gttctgaatcatgtacaagaggaaccaattgtgctatggtgtgacaac |
461 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30049248 |
gatctgaatcatgtacaagaggaaccaattgtgctatggtgtgacaac |
30049295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 14 - 374
Target Start/End: Original strand, 7161205 - 7161549
Alignment:
| Q |
14 |
tactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttggtgttctctgctaatctgctttcaaggttcatgcattca |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||| | ||||||||||||||||||||||| |
|
|
| T |
7161205 |
tactcaatataggagtttgattggttgtcttctttacttgactgcaactagactagatttgatgttctctactagtttgctttcaaggttcatgcattca |
7161304 |
T |
|
| Q |
114 |
ccaagtgtaacacacttaggtgtgggcaaaagagcgttgaggtacatatgatgtactattgattttggtatttggtacaacaaaggtgatggtaagattg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7161305 |
ccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtgatggtaagattg |
7161404 |
T |
|
| Q |
214 |
aaggctttgttgatagtgattgggctggatctgttgatgattctaaaagcacaagtggttatgttttttcactttttagtggcgtattttcatggaattc |
313 |
Q |
| |
|
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
7161405 |
aa----------------attgggctggatcggttgatgattctaaaagcacaagtggttatgttttttcacttggtagtggtgtattttcatggaattc |
7161488 |
T |
|
| Q |
314 |
caaaaaataagatgtggttgctcaatcctcagctgaagctgagtatattggtactgcagct |
374 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
7161489 |
caaaaaacaagacgtggttgctcaatcctcagctgaagctgagtatattgctgctgcagct |
7161549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 370 - 461
Target Start/End: Original strand, 7162157 - 7162248
Alignment:
| Q |
370 |
cagctgcatcaaatcaagctatttggatcaaaaaggtattgagtgttctgaatcatgtacaagaggaaccaattgtgctatggtgtgacaac |
461 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7162157 |
cagctgcatcaaatcaagctatttggatcaaaatggtattgagtgatctgaatcatatacaagaggaaccaattgtgctatggtgtgacaac |
7162248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 14 - 461
Target Start/End: Complemental strand, 197167 - 196720
Alignment:
| Q |
14 |
tactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttggtgttctctgctaatctgctttcaaggttcatgcattca |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||| ||||||||||||||| |
|
|
| T |
197167 |
tactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggttcatgcattca |
197068 |
T |
|
| Q |
114 |
ccaagtgtaacacacttaggtgtgggcaaaagagcgttgaggtacatatgatgtactattgattttggtatttggtacaacaaaggtgatggtaagattg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
197067 |
ccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtgatggtaagattg |
196968 |
T |
|
| Q |
214 |
aaggctttgttgatagtgattgggctggatctgttgatgattctaaaagcacaagtggttatgttttttcactttttagtggcgtattttcatggaattc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
196967 |
aaggctttgttgatagtgattgggctggatctattgatgattctaaaagcacaagtggttatgttttttcacttggtagtggtgtattttcatggaattc |
196868 |
T |
|
| Q |
314 |
caaaaaataagatgtggttgctcaatcctcagctgaagctgagtatattggtactgcagctgcatcaaatcaagctatttggatcaaaaaggtattgagt |
413 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
196867 |
caaaaaacaagatgtggttgctcaatcctcagctgaagctgagtatattgctgctgcagctgcatcaaatcaagctatttggatcaaaaaggtattgagt |
196768 |
T |
|
| Q |
414 |
gttctgaatcatgtacaagaggaaccaattgtgctatggtgtgacaac |
461 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
196767 |
gatctgaatcatgtacaagaggaaccaattgtgctatggtgtgacaac |
196720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 380; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 14 - 461
Target Start/End: Complemental strand, 39950328 - 39949881
Alignment:
| Q |
14 |
tactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttggtgttctctgctaatctgctttcaaggttcatgcattca |
113 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||| ||||||||||||||| |
|
|
| T |
39950328 |
tactcaatataggagtttgataggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggttcatgcattca |
39950229 |
T |
|
| Q |
114 |
ccaagtgtaacacacttaggtgtgggcaaaagagcgttgaggtacatatgatgtactattgattttggtatttggtacaacaaaggtgatggtaagattg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39950228 |
ccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtgatggtaagattg |
39950129 |
T |
|
| Q |
214 |
aaggctttgttgatagtgattgggctggatctgttgatgattctaaaagcacaagtggttatgttttttcactttttagtggcgtattttcatggaattc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
39950128 |
aaggctttgttgatagtgattgggctggatctgttgatgattctaaaagcacaagtggttatgttttttcacttggtagtggtgtattttcatggaattc |
39950029 |
T |
|
| Q |
314 |
caaaaaataagatgtggttgctcaatcctcagctgaagctgagtatattggtactgcagctgcatcaaatcaagctatttggatcaaaaaggtattgagt |
413 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39950028 |
caaaaaacaagatgtggttgctcaatcctcagctgaagctgagtatattgctgctgcagctgcatcaaatcaagctatttggatcaaaaaggtattgagc |
39949929 |
T |
|
| Q |
414 |
gttctgaatcatgtacaagaggaaccaattgtgctatggtgtgacaac |
461 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39949928 |
gatctgaatcatgtacaagaggaaccaattgtgctatggtgtgacaac |
39949881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 253
Target Start/End: Complemental strand, 35966481 - 35966452
Alignment:
| Q |
224 |
tgatagtgattgggctggatctgttgatga |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
35966481 |
tgatagtgattgggctggatctgttgatga |
35966452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 253
Target Start/End: Complemental strand, 35987893 - 35987864
Alignment:
| Q |
224 |
tgatagtgattgggctggatctgttgatga |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
35987893 |
tgatagtgattgggctggatctgttgatga |
35987864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 253
Target Start/End: Original strand, 43586298 - 43586327
Alignment:
| Q |
224 |
tgatagtgattgggctggatctgttgatga |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
43586298 |
tgatagtgattgggctggatctgttgatga |
43586327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 14 - 461
Target Start/End: Original strand, 3945102 - 3945549
Alignment:
| Q |
14 |
tactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttggtgttctctgctaatctgctttcaaggttcatgcattca |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||| ||||||||||||||| |
|
|
| T |
3945102 |
tactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggttcatgcattca |
3945201 |
T |
|
| Q |
114 |
ccaagtgtaacacacttaggtgtgggcaaaagagcgttgaggtacatatgatgtactattgattttggtatttggtacaacaaaggtgatggtaagattg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||| || |||||| ||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3945202 |
ccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtgatagtaagattg |
3945301 |
T |
|
| Q |
214 |
aaggctttgttgatagtgattgggctggatctgttgatgattctaaaagcacaagtggttatgttttttcactttttagtggcgtattttcatggaattc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
3945302 |
aaggctttgttgatagtgattgggctggatctattgatgattctaaaagcacaagtggttatgttttttcacttggtagtggtgtattttcatggaattc |
3945401 |
T |
|
| Q |
314 |
caaaaaataagatgtggttgctcaatcctcagctgaagctgagtatattggtactgcagctgcatcaaatcaagctatttggatcaaaaaggtattgagt |
413 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945402 |
caaaaaacaagatgtggttgctcaatcctcagctgaagctgagtatattgctgctgcagctgcatcaaatcaagctatttggatcaaaaaggtattgagt |
3945501 |
T |
|
| Q |
414 |
gttctgaatcatgtacaagaggaaccaattgtgctatggtgtgacaac |
461 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945502 |
gatctgaatcatgtacaagaggaaccaattgtgctatggtgtgacaac |
3945549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 253
Target Start/End: Original strand, 26257436 - 26257465
Alignment:
| Q |
224 |
tgatagtgattgggctggatctgttgatga |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
26257436 |
tgatagtgattgggctggatctgttgatga |
26257465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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