View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20128_low_6 (Length: 442)
Name: NF20128_low_6
Description: NF20128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20128_low_6 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 19 - 442
Target Start/End: Complemental strand, 41702585 - 41702164
Alignment:
| Q |
19 |
gattaatggtctaaatcgccttttggtttccgaaaatgcaacaccaatgcctcattctcaatgtatcaaagtattattgacactgtgtttaaggaatgag |
118 |
Q |
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| T |
41702585 |
gattaatggtctaaatcgccttttggtttccgaaaatgcaacaccaatgcctcattctcaatgtatcaaagtattattgacactgtgtttaaggaatgag |
41702486 |
T |
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| Q |
119 |
agcgctttcatagctgtcaaaaattctttgttgctcacctcggttaactattcatgaaggggaagctgttggtctatatcaagcttgtttgtggatgatg |
218 |
Q |
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| T |
41702485 |
agcgctttcatagctgtcaaacattctttgttgctcacctcggttaactattcatgaaggggaagctgttggtctatatcaagcttgtttgtggatgatg |
41702386 |
T |
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| Q |
219 |
gatctaaatatcaagaatgttatttttgagttggataccaaatttgtgcttgatagtttcattcatcgccagcgtttatgtacgaattccatgttatttt |
318 |
Q |
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| T |
41702385 |
gatctaaatatcaag--tgttatttttgagttggataccaaatttgttcttgatagtttcattcatcgccagcgtttatgtacgaattccgtgttatttt |
41702288 |
T |
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| Q |
319 |
agagaatcttagaggtttaaattatttctattttaaaaacttgcatgttattctttaagaggaaaacaaatgcggtcgctcatattttaaaaatgtacca |
418 |
Q |
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| T |
41702287 |
agagaatcttagaggtttaaattatttctattttaaaaacctccatgttgttctttaagaggaaaacaaatacggtcgctcatattttaaaaatgtacca |
41702188 |
T |
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| Q |
419 |
catatgcactaaatcctctgtgct |
442 |
Q |
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| T |
41702187 |
catatacactaaatcctctgtgct |
41702164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 263
Target Start/End: Complemental strand, 32674390 - 32674314
Alignment:
| Q |
187 |
ttggtctatatcaagcttgtttgtggatgatggatctaaatatcaagaatgttatttttgagttggataccaaattt |
263 |
Q |
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| T |
32674390 |
ttggtcaatatcaagcttgattgtgaatgatagagctaaatgtcaataatgtaatgcttgagttggatgtcaaattt |
32674314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 277
Target Start/End: Complemental strand, 4664622 - 4664567
Alignment:
| Q |
222 |
ctaaatatcaagaatgttatttttgagttggataccaaatttgtgcttgatagttt |
277 |
Q |
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| T |
4664622 |
ctaaatatcaagaaagtcttgtttgagttggatgccaaatttgtgctagatagttt |
4664567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 245
Target Start/End: Complemental strand, 8803640 - 8803567
Alignment:
| Q |
169 |
ttcatgaaggggaagctgttggtctatatcaagcttgtttgtggatgatggatctaaatatcaagaatgttattttt |
245 |
Q |
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| T |
8803640 |
ttcatgaaggggaagtttttgg---atatgaagcttgtttgtggatgatgaaggtaaatgtccagaatgttattttt |
8803567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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