View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20128_low_7 (Length: 331)
Name: NF20128_low_7
Description: NF20128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20128_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 11 - 315
Target Start/End: Original strand, 22866944 - 22867248
Alignment:
| Q |
11 |
taatactaatcaccatcaatacacatacacatttcttatgattcttaaaatttactgtgcgaatcacgttcattgagaagctatacttttggagaagtgt |
110 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||| |||||||||||||||||||||||| |
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| T |
22866944 |
taatactaatcatcatcaatacacatacacatttcttatgattcttaaaatttactgcgtgaatcacgttccttgggaagctatacttttggagaagtgt |
22867043 |
T |
|
| Q |
111 |
atggctgcacggttgagataaacgactaagtttgtttgaatgaacgatgagtttgacaaaattatagtgacattgtaattttgttaaaatctatattgta |
210 |
Q |
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|||| |||| ||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
22867044 |
atggttgcatggttgaggtgaacgattaagtttgtttgaatgaacgatgagtttgacaaaattatagtgacattgtaattttgttaaaatctatattata |
22867143 |
T |
|
| Q |
211 |
gttttatcaaaatcattatagttcaccgttattattacaatttcaccccacacatgtagtaggttttcaactgtttacaaagagtcaacatatatactat |
310 |
Q |
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|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
22867144 |
gttttatcaaaatcattatagttcgccgttattattaaaatttcaccccacacatgtagtaggttttcaactatttacaaagagtcaacatatatactat |
22867243 |
T |
|
| Q |
311 |
aaata |
315 |
Q |
| |
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||||| |
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| T |
22867244 |
aaata |
22867248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 5e-44; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 43925300 - 43925186
Alignment:
| Q |
11 |
taatactaatcaccatcaatacacatacacatttcttatgattcttaaaatttactgtgcgaatcacgttcattgagaagctatacttttggagaagtgt |
110 |
Q |
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|||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
43925300 |
taatactaatcatcatcaatacacatacatatttcttacgattcttaaaatttactgtctgaatcacgttctttgagaagctatacttttggagaagtgt |
43925201 |
T |
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| Q |
111 |
atggctgcacggttg |
125 |
Q |
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||||||||||||||| |
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| T |
43925200 |
atggctgcacggttg |
43925186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 172 - 281
Target Start/End: Complemental strand, 43925180 - 43925067
Alignment:
| Q |
172 |
ttatagtgacattgtaattttgttaaaatctatattgtagttttatcaaaatcat----tatagttcaccgttattattacaatttcaccccacacatgt |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||| ||||||||||||||||| ||||||||| |
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| T |
43925180 |
ttatagtgacattgtaattttgttaaaatctatattgtagttttatcaaaatcattatatatagttgatcgtaattattacaatttcacctcacacatgt |
43925081 |
T |
|
| Q |
268 |
agtaggttttcaac |
281 |
Q |
| |
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| |||||||||||| |
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| T |
43925080 |
attaggttttcaac |
43925067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 315
Target Start/End: Complemental strand, 43924489 - 43924447
Alignment:
| Q |
273 |
gttttcaactgtttacaaagagtcaacatatatactataaata |
315 |
Q |
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||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
43924489 |
gttttcaactgtttataaaatgtcaacatatatactataaata |
43924447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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