View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20129_high_5 (Length: 282)
Name: NF20129_high_5
Description: NF20129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20129_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 15 - 263
Target Start/End: Original strand, 11611865 - 11612113
Alignment:
| Q |
15 |
cagagaacttgaaatggtttgttcaagccgagcttgtgaatggacgttgggctatgttaggtgttgcagggatgttactccctgaagtcttcaccaacat |
114 |
Q |
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| T |
11611865 |
cagagaacttgaaatggtttgttcaagccgagcttgtgaatggacgttgggctatgttaggtgttgcagggatgttactccctgaagtcttcaccaacat |
11611964 |
T |
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| Q |
115 |
tggaatcatcaacgttccaaaatggtatgatgcagggaaagaagaatactttgcttcatcttcaacactctttgtgatcgagttcattttgttccattac |
214 |
Q |
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| T |
11611965 |
tggaatcatcaacgttccaaaatggtatgatgcagggaaagaagaatactttgcttcatcttcaacactctttgtgatcgagttcattttgttccattac |
11612064 |
T |
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| Q |
215 |
gtcgagattagaagatggcaagacattaagaaccctggtagcgttaacc |
263 |
Q |
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| T |
11612065 |
gtcgagattagaagatggcaagacattaagaaccctggtagcgttaacc |
11612113 |
T |
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