View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20129_high_6 (Length: 273)
Name: NF20129_high_6
Description: NF20129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20129_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 4130530 - 4130282
Alignment:
| Q |
1 |
ttggtttagctagaattgttaaaggtggagaaggtgatgaagctaacacaaaaagggttgttggaacttagtaagtattcctatatcatttgacaatata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4130530 |
ttggtttagctagaattgttaaaggtggagaaggtgatgaagctaacacaaaaagggttgttggaacttagtaagtattcctatatcatttgacaatata |
4130431 |
T |
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| Q |
101 |
atgttaaaataattaatcttacaaattagtgagttagttattacatatgtacttgttataatatatatgctctaaatgtagtggttatatgccgcctgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4130430 |
atgttaaaataattaatcttacaaattagtgagttagttattacatatgtacttattataatatatatgctctaaatgtagtggttatatgccgcctgaa |
4130331 |
T |
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| Q |
201 |
tatgcaatggggggacttttctcagagaaatcagatgtatatagctttg |
249 |
Q |
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| T |
4130330 |
tatgcaatggggggacttttctcagagaaatcagatgtatatagctttg |
4130282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 4120446 - 4120201
Alignment:
| Q |
1 |
ttggtttagctagaattgttaaaggtggagaaggtgatgaagctaacacaaaaagggttgttggaacttagtaagtattcctatatcatttgacaatata |
100 |
Q |
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|||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||| |||||| ||||| ||| |||| |
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| T |
4120446 |
ttgggttagctagaattgttaaaggtggagaagatgatgaagctaacacgaaaagggttgtcggaacttagtaagtaatcctatctcattgaacattata |
4120347 |
T |
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| Q |
101 |
atgttaaaataattaatcttacaaattagtgagttagttattacatatgtacttgttataatatatatgctctaaatgtagtggttatatgccgcctgaa |
200 |
Q |
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| T |
4120346 |
ttgttgggattattaatgctacaaatgaattgtttaatcattactcctgt---tattataacatatatgctttaaatgcagtggttatatgccgccagaa |
4120250 |
T |
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| Q |
201 |
tatgcaatggggggacttttctcagagaaatcagatgtatatagctttg |
249 |
Q |
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| T |
4120249 |
tatgcaatggaggggcttttctctgagaaatcagatgtatatagctttg |
4120201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 3 - 249
Target Start/End: Complemental strand, 4150892 - 4150645
Alignment:
| Q |
3 |
ggtttagctagaattgttaaaggtggagaaggtgatgaagctaacacaaaaagggttgttggaacttagtaagtattcctatatcatttgacaatataat |
102 |
Q |
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|||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||| | |||||| |
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| T |
4150892 |
ggtttagcaagaattgttaaatttggagaagatgatgaagctaacacaaaaagggttgttggaacttagtaagtagtactatctcatttgatattataat |
4150793 |
T |
|
| Q |
103 |
gttaaaataattaatcttacaaattagtgagttagttattacatatgtactt---gttataat-atatatgctctaaatgtagtggttatatgccgcctg |
198 |
Q |
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| T |
4150792 |
gtt---ggaattagtgttacaaatgagtggtttaattttattttttttacttggggttatagtaacatatgttctaaatgcagtggttatatgccgcctg |
4150696 |
T |
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| Q |
199 |
aatatgcaatggggggacttttctcagagaaatcagatgtatatagctttg |
249 |
Q |
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|||||||||||| ||| |||||||| || ||||||||||| |||||||||| |
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| T |
4150695 |
aatatgcaatggaggggcttttctctgaaaaatcagatgtctatagctttg |
4150645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 4142882 - 4142806
Alignment:
| Q |
1 |
ttggtttagctagaattgttaaaggtggagaaggtgatgaagctaacacaaaaagggttgttggaacttagtaagta |
77 |
Q |
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||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4142882 |
ttggtttagctagaattgttaaatttggagaagatgatgaagctaacacaaaaagggttgttggaacttagtaagta |
4142806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 166 - 249
Target Start/End: Complemental strand, 4159729 - 4159646
Alignment:
| Q |
166 |
tatgctctaaatgtagtggttatatgccgcctgaatatgcaatggggggacttttctcagagaaatcagatgtatatagctttg |
249 |
Q |
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| T |
4159729 |
tatgctctaaatgcagtggttatatgccgcctgaatatgcaatggaaggacttttttctgagaaatcagatgtttatagctttg |
4159646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 4159911 - 4159837
Alignment:
| Q |
1 |
ttggtttagctagaattgttaaaggtggagaaggtgatgaagctaacacaaaaagggttgttggaacttagtaag |
75 |
Q |
| |
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||||||||||||||||||||||||| ||||||| ||||||| | |||||||| |||||||||||||||||||||| |
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| T |
4159911 |
ttggtttagctagaattgttaaaggaggagaagatgatgaaacaaacacaaatagggttgttggaacttagtaag |
4159837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 172 - 244
Target Start/End: Complemental strand, 4142704 - 4142632
Alignment:
| Q |
172 |
ctaaatgtagtggttatatgccgcctgaatatgcaatggggggacttttctcagagaaatcagatgtatatag |
244 |
Q |
| |
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||||||| |||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||| ||||| |
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| T |
4142704 |
ctaaatgcagtggttatatgccacctgaatatgcaatggaggggcttttctcagagaaatcagatgtctatag |
4142632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 249
Target Start/End: Original strand, 20303863 - 20303939
Alignment:
| Q |
173 |
taaatgtagtggttatatgccgcctgaatatgcaatggggggacttttctcagagaaatcagatgtatatagctttg |
249 |
Q |
| |
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|||||| ||||| |||||| | |||||||| |||||| | |||||||| ||||||||||||||||| | |||||||| |
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| T |
20303863 |
taaatgcagtggctatatgtctcctgaatacgcaatgcgaggacttttttcagagaaatcagatgtttttagctttg |
20303939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 249
Target Start/End: Complemental strand, 20062461 - 20062387
Alignment:
| Q |
175 |
aatgtagtggttatatgccgcctgaatatgcaatggggggacttttctcagagaaatcagatgtatatagctttg |
249 |
Q |
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|||| |||||||||||| | |||||||| |||||| |||||||| ||||||||||||||||| | |||||||| |
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| T |
20062461 |
aatgcagtggttatatgtctcctgaatacgcaatgcaaggacttttttcagagaaatcagatgtttttagctttg |
20062387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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