View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20129_low_1 (Length: 582)
Name: NF20129_low_1
Description: NF20129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20129_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 11 - 347
Target Start/End: Complemental strand, 48818961 - 48818625
Alignment:
| Q |
11 |
catcatcaatgagtgttaaggaaatttatatacttgtatacgaaaataagacagtgacatctcataataatgtcctaaaaatacttgcgatcaaaatcaa |
110 |
Q |
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| T |
48818961 |
catcatcaatgagtgttaaggaaatttatatacttgtatacgaaaataagacagtgaaatctcataataatgtactaaaaatacttgcgatcaaaatcaa |
48818862 |
T |
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| Q |
111 |
gcaagacttacgatgtaacaaagcagaaaataattcaagcgaaaaccaatgtataagattaacacattgtatccgaagcaatcacctttagcagtgggaa |
210 |
Q |
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| T |
48818861 |
gcaagacttacgatgtaacaaagcagaaaataattcaagcgaaaaccaatgtataagattaacacattgtatacgaagcaatcacctttagcagtgggaa |
48818762 |
T |
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| Q |
211 |
gctgttttccatctttagtgtagaactccctaattgaaaccaatgtcatccctttgaaatctcgaaccgccacattcctcctggctgatagctacatatc |
310 |
Q |
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| T |
48818761 |
gctgttttccatctttagtgtagaactccctaattgaaaccaatgtcatccctttgaaatctcgaaccgccacattcctcctggctgatagctacatatc |
48818662 |
T |
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| Q |
311 |
aaacaagcaacatctattaagagcaatgactagcatc |
347 |
Q |
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| T |
48818661 |
aaacaagcaacatctattaagagcaatgactagcatc |
48818625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 428 - 567
Target Start/End: Complemental strand, 48818545 - 48818406
Alignment:
| Q |
428 |
ccatgaaatactaataagtttaaggattgaaaataagagtgactggttaacctggcaaataacgtcttctgaatcgtcgtttttgcgtttgacacccacc |
527 |
Q |
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| T |
48818545 |
ccatgaaatactaataagtttaaggattgaaaataagagtgactggttaacctggcaaataacgtcttctgaatcgtcgtttttgcgtttgacacccacc |
48818446 |
T |
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| Q |
528 |
accttattgaactcttggggttgtggtggttcaacttcct |
567 |
Q |
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| T |
48818445 |
accttattgaactcttgtggttgtggtggttcaacttcct |
48818406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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