View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20129_low_10 (Length: 230)
Name: NF20129_low_10
Description: NF20129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20129_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 17785142 - 17785337
Alignment:
| Q |
18 |
ggctaaaggaatttgagaaggaaatctttttagacattgcatgctttttcaaaggatacagactaagtgatatcttgaacatactatgtagtggtcgtgg |
117 |
Q |
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| T |
17785142 |
ggctaaaggaatttgtgaaggaaatctttttagacattgcatgcttcttcaaaggatacagactaagtgatatcttgaacatactatgtagtggtcgtga |
17785241 |
T |
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| Q |
118 |
cttcgacccagactatgctattcaggtattggttgataagagtctgataaaaatcgatgatcgtcatgtgaggctgcatgacatgattgaagatat |
213 |
Q |
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| T |
17785242 |
cttcgacccagactatgctattcaggtattggttgataagagtctgataaaaatcgatgatcgtcatgtgaggctgcatgacatgattgaagatat |
17785337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 213
Target Start/End: Original strand, 17802440 - 17802632
Alignment:
| Q |
21 |
taaaggaatttgagaaggaaatctttttagacattgcatgctttttcaaaggatacagactaagtgatatcttgaacatactatgtagtggtcgtggctt |
120 |
Q |
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| T |
17802440 |
taaaagaatttgaaaaggaaatctttttagacatcacttgctttttcaaaggatacaaactaagtgatgtcatgaacatattacatagtggccgtggcta |
17802539 |
T |
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| Q |
121 |
cgacccagactatgctattcaggtattggttgataagagtctgataaaaatcgatgatcgtcatgtgaggctgcatgacatgattgaagatat |
213 |
Q |
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| T |
17802540 |
cgccccagactatgctgtccaggtcttgattgataagagtctaataaaaatgaatgaatatcgtgtgaggatacatgacatgattgaagatat |
17802632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 169
Target Start/End: Original strand, 17791491 - 17791639
Alignment:
| Q |
21 |
taaaggaatttgagaaggaaatctttttagacattgcatgctttttcaaaggatacagactaagtgatatcttgaacatactatgtagtggtcgtggctt |
120 |
Q |
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| T |
17791491 |
taaaagaatttgagaaggaaatctttttagaccttgcttgcttcttcaaaggagcaaagttaagtgatgtcaagaacatactatgttgtggtcgtggctt |
17791590 |
T |
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| Q |
121 |
cgacccagactatgctattcaggtattggttgataagagtctgataaaa |
169 |
Q |
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| T |
17791591 |
ttccccagactatgctatccaggtgttgattgacaagagtctgataaaa |
17791639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 213
Target Start/End: Original strand, 17818017 - 17818106
Alignment:
| Q |
124 |
cccagactatgctattcaggtattggttgataagagtctgataaaaatcgatgatcgtcatgtgaggctgcatgacatgattgaagatat |
213 |
Q |
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| T |
17818017 |
cccagactatcctgtccaggtgatgattgataagagtctaataaaaattgatgaatatcgtgtgaggatgcatcacatgattgaagatat |
17818106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 6140408 - 6140368
Alignment:
| Q |
32 |
gagaaggaaatctttttagacattgcatgctttttcaaagg |
72 |
Q |
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| T |
6140408 |
gagaaggaaatgtttctagacattgcattctttttcaaagg |
6140368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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