View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20129_low_11 (Length: 229)

Name: NF20129_low_11
Description: NF20129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20129_low_11
NF20129_low_11
[»] chr1 (1 HSPs)
chr1 (19-211)||(8848790-8848985)
[»] chr4 (1 HSPs)
chr4 (141-211)||(51038822-51038893)
[»] chr7 (5 HSPs)
chr7 (141-211)||(5811225-5811295)
chr7 (141-211)||(23980190-23980260)
chr7 (141-211)||(13108207-13108276)
chr7 (141-211)||(38321068-38321138)
chr7 (141-211)||(46475083-46475153)
[»] chr2 (1 HSPs)
chr2 (141-211)||(24137154-24137224)
[»] chr6 (2 HSPs)
chr6 (141-211)||(14022993-14023063)
chr6 (141-211)||(24208503-24208573)
[»] chr5 (2 HSPs)
chr5 (141-211)||(17225376-17225446)
chr5 (142-207)||(12164314-12164382)
[»] chr3 (2 HSPs)
chr3 (141-211)||(39467163-39467233)
chr3 (178-211)||(36370437-36370470)


Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 8848790 - 8848985
Alignment:
Q  19 cagatgattcgttgttgagcaaaag---catgttgtaagagacacattgtacaaaggaaaaagataggtagacattatttttatatatctctcatgtaca 115  Q
    ||||||||||||||||||| || ||   || |||||||||||||||||||||||||||||||||||||||||||  |||||||  |||||||||||||||    
T  8848790 cagatgattcgttgttgagtaagaggagcaggttgtaagagacacattgtacaaaggaaaaagataggtagacaccatttttacgtatctctcatgtaca 8848889  T
Q  116 tctccatgtgatactgtgacagtactattttagtaatttcacatcacactctcactccctcccatctcttatttcaatgtttttgtcacatgtcac 211  Q
    |||| |||||| ||||||| || ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8848890 tctctatgtgacactgtgataggactattttaataatttcacatcacactctcaccccctcccatctcttatttcaatgtttttgtcacatgtcac 8848985  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 141 - 211
Target Start/End: Complemental strand, 51038893 - 51038822
Alignment:
Q  141 tattttagtaatttcacatcacactctcactccctcc-catctcttatttcaatgtttttgtcacatgtcac 211  Q
    ||||||||||||||||||||||||  |||| ||||   |||||||| |||||||||||||||||||||||||    
T  51038893 tattttagtaatttcacatcacaccatcacccccttttcatctcttctttcaatgtttttgtcacatgtcac 51038822  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 211
Target Start/End: Original strand, 5811225 - 5811295
Alignment:
Q  141 tattttagtaatttcacatcacactctcactccctcccatctcttatttcaatgtttttgtcacatgtcac 211  Q
    |||||||||||||||||||||||  ||||| || |  |||||||| |||||||||||||| ||||||||||    
T  5811225 tattttagtaatttcacatcacatcctcaccccttttcatctcttctttcaatgtttttgccacatgtcac 5811295  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 211
Target Start/End: Complemental strand, 23980260 - 23980190
Alignment:
Q  141 tattttagtaatttcacatcacactctcactccctcccatctcttatttcaatgtttttgtcacatgtcac 211  Q
    |||||||||||||||||||||||  ||||| || |  |||||||| |||||||||||||| ||||||||||    
T  23980260 tattttagtaatttcacatcacatcctcaccccttttcatctcttctttcaatgtttttgccacatgtcac 23980190  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 211
Target Start/End: Complemental strand, 13108276 - 13108207
Alignment:
Q  141 tattttagtaatttcacatcacactctcactccctcccatctcttatttcaatgtttttgtcacatgtcac 211  Q
    |||||||||||||||||||||||  ||||| ||||  |||||||| |||||| ||||||| ||||||||||    
T  13108276 tattttagtaatttcacatcacatcctcac-ccctttcatctcttctttcaacgtttttgccacatgtcac 13108207  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 211
Target Start/End: Complemental strand, 38321138 - 38321068
Alignment:
Q  141 tattttagtaatttcacatcacactctcactccctcccatctcttatttcaatgtttttgtcacatgtcac 211  Q
    |||||||||| |||||||||||||  ||||  |||| ||| |||| |||||||||||||| ||||||||||    
T  38321138 tattttagtactttcacatcacaccatcacctcctctcatatcttctttcaatgtttttgccacatgtcac 38321068  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 211
Target Start/End: Complemental strand, 46475153 - 46475083
Alignment:
Q  141 tattttagtaatttcacatcacactctcactccctcccatctcttatttcaatgtttttgtcacatgtcac 211  Q
    |||||||||||||||||||||||   |||| || |  |||||||| ||||||||||||||| |||||||||    
T  46475153 tattttagtaatttcacatcacatcgtcaccccttttcatctcttctttcaatgtttttgttacatgtcac 46475083  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 211
Target Start/End: Original strand, 24137154 - 24137224
Alignment:
Q  141 tattttagtaatttcacatcacactctcactccctcccatctcttatttcaatgtttttgtcacatgtcac 211  Q
    |||||||||||||||||||||||  ||||  || |  |||||||| |||||||||||||||||||||||||    
T  24137154 tattttagtaatttcacatcacatcctcatcccttttcatctcttctttcaatgtttttgtcacatgtcac 24137224  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 211
Target Start/End: Complemental strand, 14023063 - 14022993
Alignment:
Q  141 tattttagtaatttcacatcacactctcactccctcccatctcttatttcaatgtttttgtcacatgtcac 211  Q
    |||||||||||||||||||||||   |||| || |  |||||||| |||||||||||||| ||||||||||    
T  14023063 tattttagtaatttcacatcacatcgtcaccccttgtcatctcttctttcaatgtttttgccacatgtcac 14022993  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 211
Target Start/End: Complemental strand, 24208573 - 24208503
Alignment:
Q  141 tattttagtaatttcacatcacactctcactccctcccatctcttatttcaatgtttttgtcacatgtcac 211  Q
    |||||||||||||||||||||||  ||||| |  |  |||||||| |||||||||||||| ||||| ||||    
T  24208573 tattttagtaatttcacatcacatcctcaccctttttcatctcttctttcaatgtttttgccacatatcac 24208503  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 211
Target Start/End: Complemental strand, 17225446 - 17225376
Alignment:
Q  141 tattttagtaatttcacatcacactctcactccctcccatctcttatttcaatgtttttgtcacatgtcac 211  Q
    |||||||||||||||||||||||   ||||  | |  |||||||| |||||||||||||||||||||||||    
T  17225446 tattttagtaatttcacatcacatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcac 17225376  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 12164382 - 12164314
Alignment:
Q  142 attttagtaatttcacatcacactctcactccctcccatc---tcttatttcaatgtttttgtcacatg 207  Q
    |||||||||||||||||||||||  |||| | ||||||||   |||| |||||||||||||| ||||||    
T  12164382 attttagtaatttcacatcacaccatcaccctctcccatctcttcttctttcaatgtttttgccacatg 12164314  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 211
Target Start/End: Original strand, 39467163 - 39467233
Alignment:
Q  141 tattttagtaatttcacatcacactctcactccctcccatctcttatttcaatgtttttgtcacatgtcac 211  Q
    |||||||||||||||| ||||||  ||||| || |  |||||||| ||||||| |||||| ||||||||||    
T  39467163 tattttagtaatttcatatcacatcctcaccccttttcatctcttctttcaatatttttggcacatgtcac 39467233  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 211
Target Start/End: Original strand, 36370437 - 36370470
Alignment:
Q  178 catctcttatttcaatgtttttgtcacatgtcac 211  Q
    |||||||| |||||||||||||||||||||||||    
T  36370437 catctcttctttcaatgtttttgtcacatgtcac 36370470  T

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