View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20129_low_2 (Length: 552)
Name: NF20129_low_2
Description: NF20129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20129_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 45 - 538
Target Start/End: Original strand, 52534770 - 52535265
Alignment:
| Q |
45 |
ggggggcaacaattattagcttgggaggaagagttggtaggagattgagtgttttgccaagttcaattgttttgtaggaaggcaaagaggaca--ggtgt |
142 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
52534770 |
ggggggcaacaattattagcttgggaggaagagtaggtaggagattgagtgttttgtcaagttcaattgttttgtaggaaggcaaagaggacacaggtgt |
52534869 |
T |
|
| Q |
143 |
ccctagaaactagagccgactaaaggttacataagtttattgcttgttgttatatgtggagttaccagtcactctgatgttacacacattttatcgagta |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||| |
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| T |
52534870 |
ccctagaaactagagccgactaaaggttacataagtttatcacttgttgttatatgtggagttagcagtcgctctgatgttgcacacattttatcgagta |
52534969 |
T |
|
| Q |
243 |
aaattgtcccttttaaagtaactatgtttgcttagcggttgctttgtaatagaattcctgttgcagataacttgttcataggagatattattaaggataa |
342 |
Q |
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||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
52534970 |
aaattgtcccttttaaagtaattatgtttgcttgacggttgctttgtaatagaattcctattgcagataacttgttcgtaggagatattattaaggataa |
52535069 |
T |
|
| Q |
343 |
tgttcaaatgtgtgtcagtggttgaggtaacattgaaattgcaggtcatttgtttatgagttgtgacttctttgaaagaatttggttcttggtgctgcaa |
442 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
52535070 |
tgttcaaatgtgtgttagtggttgaggtaacattgaaattgcaggtcatttgtttatgagttgtgacttctctgaaagaattcggttcttggtgctgcaa |
52535169 |
T |
|
| Q |
443 |
tggttagacaacattttggtgaacctggtgcgcctatctaaccacctaattcaattcagtcatttttcaaaacatgttcgttcgccgttacatatt |
538 |
Q |
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|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
52535170 |
tggttagataacgttttggtgaacctggtgcgcctatctaaccacctaattcaattcagtcatttttcaaaacatgttcgttcgtcgttacatatt |
52535265 |
T |
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