View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20129_low_3 (Length: 545)
Name: NF20129_low_3
Description: NF20129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20129_low_3 |
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| [»] scaffold0169 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 21 - 535
Target Start/End: Original strand, 8106619 - 8107143
Alignment:
| Q |
21 |
tatctccccaggaatagttacacttgctggcaactaagcaacaacagtaaacaaaatccaattgaaattcaagcacacttttgttcctttacacgttgat |
120 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8106619 |
tatctccccaggaatggttacacttgctggcaactaagcaacaacagtaaacaaaatccaattgaaattcaagcacacttttgttcctttacacgttgat |
8106718 |
T |
|
| Q |
121 |
tcaatttgactaaatttgttgattaaaatttgtagatgaagaatactcttttcaaccacctattttgcatttgacataaccataaat------------- |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8106719 |
tcaatttgactaaatttgttgattaaaatttgtagatgaagaatactcttttcaaccacctattttgcatttgacataaccataaatattagaataatac |
8106818 |
T |
|
| Q |
208 |
-attagaataaaggttggggaagatgtgcaaatcaacaatgagaaatagacatctaattaaataggcnnnnnnnttatacattgattaacaaatgagtgt |
306 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
8106819 |
aattagaataaaggttggggaagatgtgcaaatcaacaatgagaaatagacatctaattaaataggcaaaaaaattatacattgattaacaaatgagtgt |
8106918 |
T |
|
| Q |
307 |
catgatctattttgattggttgttgtaaaatatatagatgagtcataatcaattttgattggatgataaagaaatattaaatgaatttgaaac--nnnnn |
404 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8106919 |
catgatctattttgattggttgttgtaaa----atagatgagtcataatcaattttgattggatgataaagaaacattaaatgaatttgaaacttttttt |
8107014 |
T |
|
| Q |
405 |
nnngttgtaaaaattatatannnnnnnatgcaaacatttgttgtatatagtgtgcggcagctgctcatctcttttaacatcctcttcaact-nnnnnnnn |
503 |
Q |
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||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
8107015 |
tttgttgtaaaaattatacatttttttatgcaaacat---ttgtatatagtgtgcggcagctgctcatctcttttaacattcccttcaactaaaaaaaaa |
8107111 |
T |
|
| Q |
504 |
tgaagctgcttagtactgttgttttgatgatg |
535 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
8107112 |
tgaagctgcttagtactgttgttttgatgatg |
8107143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 288 - 535
Target Start/End: Original strand, 8111546 - 8111788
Alignment:
| Q |
288 |
ttgattaacaaatgagtgtcatgatctattttgattggttgttgtaaaatatatagatgagtcataatcaattttgattggatgataaagaaatattaaa |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
8111546 |
ttgattaacaaatgagtgtcatgatctattttgattggttgttgtaaaata----gatgagtcataatcaattttgattggatgataaagaaacattaaa |
8111641 |
T |
|
| Q |
388 |
tgaatttgaaac-nnnnnnnngttgtaaaaattatatannnnnnnatgcaaacatttgttgtatatagtgtgcggcagctgctcatctcttttaacatcc |
486 |
Q |
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|||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| | |
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| T |
8111642 |
tgaatttgaaactttttttttgttgtaaaaattatacttttttttatgcaaacat---ttgtatatagtgtgcggcagctgctcatctcttttaacattc |
8111738 |
T |
|
| Q |
487 |
tcttcaact-nnnnnnnntgaagctgcttagtactgttgttttgatgatg |
535 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| |
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| T |
8111739 |
ccttcaactaaaaaaaaatgaagctgcttagtactgttgttttgatgatg |
8111788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 70 - 152
Target Start/End: Original strand, 8117724 - 8117804
Alignment:
| Q |
70 |
aacaaaatccaattgaaattcaagcacacttttgttcctttacacgttgattcaatttgactaaatttgttgattaaaatttg |
152 |
Q |
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|||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| || ||||| |
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| T |
8117724 |
aacaaaattcaattgaaattcaagcacacttttgtt-ctttacacgttga-gcaatttgactaaatttgttgataaacatttg |
8117804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 287 - 391
Target Start/End: Original strand, 772590 - 772690
Alignment:
| Q |
287 |
attgattaacaaatgagtgtcatgatctatttt--gattggttgttgtaaaatatatagatgagtcataatcaattttgattggatgataaagaaatatt |
384 |
Q |
| |
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|||||||||||||||||| ||||||||||||| |||||||||||| |||||| ||||||||||||| |||||||||| |||||||||||| ||| |
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| T |
772590 |
attgattaacaaatgagt--catgatctattttttgattggttgttgaaaaata----gatgagtcataattcattttgattgaatgataaagaaacatt |
772683 |
T |
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| Q |
385 |
aaatgaa |
391 |
Q |
| |
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||||||| |
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| T |
772684 |
aaatgaa |
772690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 332 - 390
Target Start/End: Original strand, 25113457 - 25113515
Alignment:
| Q |
332 |
taaaatatatagatgagtcataatcaattttgattggatgataaagaaatattaaatga |
390 |
Q |
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||||||||||| |||||||||||| ||||| ||||||||||||| ||| ||||||||| |
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| T |
25113457 |
taaaatatataagtgagtcataatctattttaattggatgataaaaaaacattaaatga |
25113515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 772391 - 772454
Alignment:
| Q |
154 |
agatgaagaatactcttttcaaccacctattttgcatttgacataaccataaatattagaataa |
217 |
Q |
| |
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||||||||| |||| || ||||||||| |||| |||||||||||| |||||||||| |||||| |
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| T |
772391 |
agatgaagattacttttgtcaaccaccagttttacatttgacataagcataaatatttgaataa |
772454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 348 - 390
Target Start/End: Complemental strand, 10894588 - 10894546
Alignment:
| Q |
348 |
gtcataatcaattttgattggatgataaagaaatattaaatga |
390 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
10894588 |
gtcataatcaattttgattggatgataagaaaacattaaatga |
10894546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 348 - 390
Target Start/End: Original strand, 38050247 - 38050289
Alignment:
| Q |
348 |
gtcataatcaattttgattggatgataaagaaatattaaatga |
390 |
Q |
| |
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||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
38050247 |
gtcataatccattttgattggatgataagaaaatattaaatga |
38050289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 772509 - 772562
Alignment:
| Q |
206 |
atattagaataaaggttggggaagatgtgcaaatcaacaatgagaaatagacat |
259 |
Q |
| |
|
|||||| |||| || ||| |||||||||||||| ||||||||||||||| |||| |
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| T |
772509 |
atattataatagagcttgaggaagatgtgcaaagcaacaatgagaaataaacat |
772562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 396
Target Start/End: Original strand, 30890105 - 30890182
Alignment:
| Q |
316 |
ttttgattggttgttgtaaaatatatagatgagtcataatcaattttgattggatgat-aaagaaatattaaatgaatttga |
396 |
Q |
| |
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|||| ||||||||||| ||||||||| ||||||| ||| |||||||||||||||| ||| ||| ||||||||||||||| |
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| T |
30890105 |
tttttattggttgttgaaaaatatat----gagtcatgatctattttgattggatgataaaaaaaacattaaatgaatttga |
30890182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0169 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0169
Description:
Target: scaffold0169; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 24202 - 24265
Alignment:
| Q |
154 |
agatgaagaatactcttttcaaccacctattttgcatttgacataaccataaatattagaataa |
217 |
Q |
| |
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||||||||| |||| || |||||||||| |||| ||||||| |||| |||||||||||||||| |
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| T |
24202 |
agatgaagattacttttgtcaaccacctgttttacatttgatataaggataaatattagaataa |
24265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 348 - 390
Target Start/End: Complemental strand, 501141 - 501099
Alignment:
| Q |
348 |
gtcataatcaattttgattggatgataaagaaatattaaatga |
390 |
Q |
| |
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|||||||||||||||||||||||||||| || |||||||||| |
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|
| T |
501141 |
gtcataatcaattttgattggatgataagaaagtattaaatga |
501099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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