View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20129_low_4 (Length: 407)

Name: NF20129_low_4
Description: NF20129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20129_low_4
NF20129_low_4
[»] chr6 (12 HSPs)
chr6 (15-387)||(31496923-31497297)
chr6 (15-387)||(31502309-31502683)
chr6 (15-387)||(31491532-31491908)
chr6 (68-209)||(31488930-31489071)
chr6 (220-387)||(31490919-31491076)
chr6 (288-368)||(4621387-4621468)
chr6 (288-341)||(4109051-4109104)
chr6 (288-341)||(4896837-4896890)
chr6 (288-341)||(14832779-14832832)
chr6 (288-341)||(33320427-33320480)
chr6 (288-341)||(35159184-35159237)
chr6 (279-331)||(21855243-21855294)
[»] chr2 (16 HSPs)
chr2 (280-342)||(8909773-8909835)
chr2 (279-342)||(38329026-38329089)
chr2 (288-341)||(28608942-28608995)
chr2 (288-337)||(32676005-32676054)
chr2 (288-341)||(32676528-32676581)
chr2 (277-326)||(39087783-39087832)
chr2 (288-341)||(42781668-42781721)
chr2 (288-341)||(1513754-1513807)
chr2 (288-337)||(18091595-18091644)
chr2 (288-341)||(25235174-25235227)
chr2 (277-326)||(38328607-38328656)
chr2 (303-341)||(44940743-44940781)
chr2 (288-341)||(19485182-19485235)
chr2 (288-341)||(19487262-19487315)
chr2 (306-368)||(23456394-23456458)
chr2 (288-341)||(28609673-28609726)
[»] chr1 (14 HSPs)
chr1 (288-368)||(8256511-8256592)
chr1 (280-342)||(9754224-9754285)
chr1 (288-341)||(1827442-1827495)
chr1 (288-341)||(16301280-16301333)
chr1 (288-341)||(16301869-16301922)
chr1 (280-337)||(20089396-20089453)
chr1 (288-341)||(28572140-28572193)
chr1 (288-341)||(19321301-19321354)
chr1 (288-341)||(22198247-22198300)
chr1 (288-341)||(28950704-28950757)
chr1 (288-341)||(33074998-33075051)
chr1 (288-341)||(50562396-50562449)
chr1 (305-367)||(35593502-35593566)
chr1 (315-368)||(21056163-21056218)
[»] scaffold0432 (1 HSPs)
scaffold0432 (280-342)||(5489-5551)
[»] chr4 (21 HSPs)
chr4 (280-342)||(48808410-48808472)
chr4 (288-341)||(39404853-39404906)
chr4 (288-341)||(8988195-8988248)
chr4 (288-341)||(20590060-20590113)
chr4 (288-341)||(24548411-24548464)
chr4 (288-341)||(24944915-24944968)
chr4 (288-341)||(24947631-24947684)
chr4 (288-341)||(37351095-37351148)
chr4 (288-341)||(46105263-46105316)
chr4 (288-368)||(26603433-26603515)
chr4 (303-341)||(24944410-24944448)
chr4 (288-341)||(2117188-2117241)
chr4 (288-341)||(8531954-8532007)
chr4 (288-341)||(3758376-3758429)
chr4 (288-341)||(52801356-52801409)
chr4 (288-337)||(8120283-8120334)
chr4 (311-368)||(26602678-26602737)
chr4 (289-341)||(42348247-42348299)
chr4 (289-341)||(42348527-42348579)
chr4 (289-341)||(46419625-46419676)
chr4 (279-331)||(54242843-54242895)
[»] chr8 (18 HSPs)
chr8 (288-341)||(1944183-1944236)
chr8 (287-341)||(41157652-41157706)
chr8 (288-341)||(7390311-7390364)
chr8 (288-341)||(8161393-8161446)
chr8 (288-341)||(8762007-8762060)
chr8 (280-337)||(18493154-18493211)
chr8 (288-341)||(25834992-25835045)
chr8 (288-341)||(41978586-41978639)
chr8 (288-341)||(4465346-4465399)
chr8 (288-341)||(12761231-12761284)
chr8 (288-341)||(32845570-32845623)
chr8 (288-341)||(41532708-41532761)
chr8 (288-341)||(44381661-44381714)
chr8 (279-322)||(41843828-41843871)
chr8 (277-331)||(41843974-41844028)
chr8 (277-331)||(41844173-41844227)
chr8 (289-367)||(34894787-34894867)
chr8 (288-341)||(36777582-36777635)
[»] chr7 (11 HSPs)
chr7 (288-341)||(24683272-24683325)
chr7 (275-326)||(15236513-15236564)
chr7 (288-341)||(9150638-9150691)
chr7 (288-341)||(29468440-29468493)
chr7 (288-341)||(35156374-35156427)
chr7 (288-341)||(44805571-44805624)
chr7 (288-341)||(49145026-49145079)
chr7 (279-322)||(15236368-15236411)
chr7 (303-341)||(4849445-4849483)
chr7 (288-341)||(7855966-7856019)
chr7 (288-337)||(33637649-33637698)
[»] chr3 (18 HSPs)
chr3 (288-368)||(36006515-36006596)
chr3 (288-341)||(8527061-8527114)
chr3 (288-341)||(9373188-9373241)
chr3 (288-341)||(35855891-35855944)
chr3 (288-341)||(39093666-39093719)
chr3 (288-341)||(40821977-40822030)
chr3 (277-326)||(40822361-40822410)
chr3 (288-341)||(55293656-55293709)
chr3 (288-341)||(19368327-19368380)
chr3 (288-341)||(29529746-29529799)
chr3 (277-326)||(40822201-40822250)
chr3 (288-341)||(53801583-53801636)
chr3 (311-368)||(9373989-9374048)
chr3 (311-368)||(51656460-51656519)
chr3 (288-337)||(53522285-53522336)
chr3 (277-331)||(36946579-36946633)
chr3 (311-368)||(53521765-53521824)
chr3 (288-337)||(53521986-53522037)
[»] chr5 (19 HSPs)
chr5 (288-341)||(753064-753117)
chr5 (277-326)||(35394111-35394160)
chr5 (277-342)||(38096794-38096859)
chr5 (288-341)||(43137269-43137322)
chr5 (288-341)||(2181841-2181894)
chr5 (288-341)||(2182580-2182633)
chr5 (288-341)||(3087417-3087470)
chr5 (288-341)||(12419441-12419493)
chr5 (288-341)||(26601545-26601598)
chr5 (288-337)||(34726258-34726307)
chr5 (279-331)||(38096953-38097005)
chr5 (279-322)||(17547722-17547765)
chr5 (279-322)||(35393636-35393679)
chr5 (288-337)||(6304057-6304106)
chr5 (288-341)||(36885777-36885830)
chr5 (288-341)||(42976904-42976957)
chr5 (311-368)||(3086692-3086751)
chr5 (275-326)||(17547568-17547620)
chr5 (311-368)||(38937379-38937438)
[»] scaffold0090 (3 HSPs)
scaffold0090 (279-326)||(13572-13619)
scaffold0090 (284-326)||(14029-14071)
scaffold0090 (277-326)||(13410-13459)
[»] scaffold2127 (1 HSPs)
scaffold2127 (288-341)||(698-751)
[»] scaffold0032 (1 HSPs)
scaffold0032 (288-341)||(3830-3883)
[»] scaffold0009 (2 HSPs)
scaffold0009 (292-341)||(232305-232354)
scaffold0009 (288-336)||(232944-232992)
[»] scaffold0012 (1 HSPs)
scaffold0012 (311-368)||(200886-200945)
[»] scaffold0079 (1 HSPs)
scaffold0079 (288-341)||(9589-9642)


Alignment Details
Target: chr6 (Bit Score: 332; Significance: 0; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 15 - 387
Target Start/End: Original strand, 31496923 - 31497297
Alignment:
Q  15 caccttcctaatgtgtttcgtccattccttgatatgtatcggatactctcctgatatatcgagcaga--tatcaatgtatcatacatatcaaatactagt 112  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  31496923 caccttcctaatgtgtttcgtccattccttgatatgtattggatactctcctgatatatcgagcagagatatcaatgtatcatacatatcaaatactagt 31497022  T
Q  113 atttcatcaattttaaagtatcgcgacttcaaattaatcactaaatttagccatcaaaactatgcacggatgtcttgtttcgaaatttagttattgtgta 212  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  31497023 atttcatcaattttaaagtatcgcggcttaaaattaatcactaaatttagccatcgaaactatgcacggatgtcttgtttcgaaatttagttattgtgta 31497122  T
Q  213 cactaaattaaaagtctttattgagtcaaatagggcatctattagggtttaaatgcatgcataatctatgattacttttactgtattactcctatttaat 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  31497123 cactaaattaaaagtctttattgagtcaaatagggcatctattagggtttaaatgcatgcataatctatgattaatttaactgtattactcctatttaat 31497222  T
Q  313 taaccctatttaatataatcaaaatgttatgttatgcaaagtaaaataaacaaatctcttaaattatttcctaat 387  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  31497223 taaccctatttaatttaatcaaaatgttatgttatgcaaagcaaaataaacaaatctcttaaattatttcctaat 31497297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 15 - 387
Target Start/End: Original strand, 31502309 - 31502683
Alignment:
Q  15 caccttcctaatgtgtttcgtccattccttgatatgtatcggatactctcctgatatatcgagcaga--tatcaatgtatcatacatatcaaatactagt 112  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||    
T  31502309 caccttcctaatgtgtttcgtccattccttgatatgtattggatactctcctgatatatggagcagagatatcaatgtatcatacatatcaaatactagt 31502408  T
Q  113 atttcatcaattttaaagtatcgcgacttcaaattaatcactaaatttagccatcaaaactatgcacggatgtcttgtttcgaaatttagttattgtgta 212  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  31502409 atttcatcaattttaaagtatcgcggcttaaaattaatcactaaatttagccatcgaaactatgcacggatgtcttgtttcgaaatttagttattgtgta 31502508  T
Q  213 cactaaattaaaagtctttattgagtcaaatagggcatctattagggtttaaatgcatgcataatctatgattacttttactgtattactcctatttaat 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  31502509 cactaaattaaaagtctttattgagtcaaatagggcatctattagggtttaaatgcatgcataatctatgattacttttactgtattactcgtatttaat 31502608  T
Q  313 taaccctatttaatataatcaaaatgttatgttatgcaaagtaaaataaacaaatctcttaaattatttcctaat 387  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  31502609 taaccctatttaatttaatcaaaatgttatgttatgcaaagcaaaataaacaaatctcttaaattatttcctaat 31502683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 15 - 387
Target Start/End: Original strand, 31491532 - 31491908
Alignment:
Q  15 caccttcctaatgtgtttcgtccattccttgatatgtatcggatactctcctgatatatcgagcagatatcaatgtatc----atacatatcaaatacta 110  Q
    |||||| |||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||| |||| ||||||||    |||||||||||||||||    
T  31491532 cacctttctaatgtgtttcgttcattccttgatatgtatcacatactctcctgatatatcgagcatatattaatgtatctatcatacatatcaaatacta 31491631  T
Q  111 gtatttcatcaattttaaagtatcgcgacttcaaattaatcactaaatttagccatcaaaactatgcacggatgtcttgtttcgaaatttagttattgtg 210  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  31491632 gtatttcatcaattttaaagtatcgcggcttcaaattaatcactaaaattagccatcgaaactatgcacagatgtcttgtttcgaaatttagttattgtg 31491731  T
Q  211 tacactaaattaaaagtctttattgagtcaaatagggcatctattagggtttaaatgcatgcataatctatgattacttttactgtattactcctattta 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||    
T  31491732 tacactaaattaaaagtctttattgagtcaaatagggcatctattagggtttaaatgcatgcagaatctatgattaatttaactgtattactcctattta 31491831  T
Q  311 attaaccctatttaatataatcaaaatgttatgttatgcaaagtaaaataaacaaatctcttaaattatttcctaat 387  Q
    |||||||||||||||| ||| |||||| |||||||||| |||| |||||||||||||||||||||||||||||||||    
T  31491832 attaaccctatttaatttaaccaaaatattatgttatggaaagcaaaataaacaaatctcttaaattatttcctaat 31491908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 68 - 209
Target Start/End: Original strand, 31488930 - 31489071
Alignment:
Q  68 atatatcgagcagatatcaatgtatcatacatatcaaatactagtatttcatcaattttaaagtatcgcgacttcaaattaatcactaaatttagccatc 167  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  31488930 atatatcaagcagatatcaatgtatcatacatatcaaatactagtatttcatcaattttaaagtatcgcaacttcaaattaatcactaaatttagccatc 31489029  T
Q  168 aaaactatgcacggatgtcttgtttcgaaatttagttattgt 209  Q
     |||||||||||||||||||||||| ||||||||||||||||    
T  31489030 gaaactatgcacggatgtcttgttttgaaatttagttattgt 31489071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 220 - 387
Target Start/End: Original strand, 31490919 - 31491076
Alignment:
Q  220 ttaaaagtctttattgagtcaaatagggcatctattagggtttaaatgcatgcataatctatgattacttttactgtattactcctatttaattaaccct 319  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||             
T  31490919 ttaaaagtctttattgagtcaaacaggacatctattagggtttaaatgcatggagaatctatgattaattttactgtattactcctattta--------- 31491009  T
Q  320 atttaatataatcaaaatgttatgttatgcaaagtaaaataaacaaatctcttaaattatttcctaat 387  Q
    ||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  31491010 atttaatttaatcaaaatgttatgttatg-aaagcaaaataaacaaatctcttaaattatttcctaat 31491076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 368
Target Start/End: Original strand, 4621387 - 4621468
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta--tgttatgcaaagtaaaataaacaaatc 368  Q
    ||||||| |||||| |||||||||||||||||||||||| |||||||||| |||  ||||||| |||  ||||||||||||||    
T  4621387 ttttactatattac-cctatttaattaaccctatttaatttaatcaaaatattaattgttatggaaatcaaaataaacaaatc 4621468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 4109104 - 4109051
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||||||  ||||||||||||||||| |||||| ||||||||||||||    
T  4109104 ttttactgtattaaccctatttaattaaccctgtttaatttaatcaaaatgtta 4109051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 4896837 - 4896890
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    ||||||| |||||  ||||||||||||||||| |||||| ||||||||||||||    
T  4896837 ttttactatattaaccctatttaattaaccctgtttaatttaatcaaaatgtta 4896890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 14832832 - 14832779
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    ||||||| |||||  ||||||||||||||||| |||||| ||||||||||||||    
T  14832832 ttttactatattaaccctatttaattaaccctgtttaatttaatcaaaatgtta 14832779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 33320427 - 33320480
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    ||||||||||||   |||||||||||||| || |||||| ||||||||||||||    
T  33320427 ttttactgtattgaccctatttaattaactctgtttaatttaatcaaaatgtta 33320480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 35159237 - 35159184
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||||||  ||||||||||| || || |||||| ||||||||||||||    
T  35159237 ttttactgtattaaccctatttaatttactctgtttaatttaatcaaaatgtta 35159184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 331
Target Start/End: Complemental strand, 21855294 - 21855243
Alignment:
Q  279 tatgattacttttactgtattactcctatttaattaaccctatttaatataat 331  Q
    |||| |||||||||||||||||| ||| ||||||||| |||||||||| ||||    
T  21855294 tatgcttacttttactgtattac-cctgtttaattaaacctatttaatttaat 21855243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 280 - 342
Target Start/End: Complemental strand, 8909835 - 8909773
Alignment:
Q  280 atgattacttttactgtattactcctatttaattaaccctatttaatataatcaaaatgttat 342  Q
    ||||||| ||||| |||||||| |||||||||||||||||||||||| |||||||||||||||    
T  8909835 atgattaattttattgtattacccctatttaattaaccctatttaatttaatcaaaatgttat 8909773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 38329026 - 38329089
Alignment:
Q  279 tatgattacttttactgtattactcctatttaattaaccctatttaatataatcaaaatgttat 342  Q
    |||| |||||||||||||||||| ||| ||||||||| |||||||||| |||||||||| ||||    
T  38329026 tatgcttacttttactgtattacccctgtttaattaaacctatttaatttaatcaaaatcttat 38329089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 28608995 - 28608942
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||||||  ||||||||||||||||| |||||| ||||||||||||||    
T  28608995 ttttactgtattaaccctatttaattaaccctgtttaatttaatcaaaatgtta 28608942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 337
Target Start/End: Original strand, 32676005 - 32676054
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaat 337  Q
    |||||||||||||| |||||||||| ||||||||||||| ||||||||||    
T  32676005 ttttactgtattacccctatttaataaaccctatttaatttaatcaaaat 32676054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 32676528 - 32676581
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||||||  ||||||||||||||||| |||||| ||||||||||||||    
T  32676528 ttttactgtattaaccctatttaattaaccctgtttaatttaatcaaaatgtta 32676581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 277 - 326
Target Start/End: Complemental strand, 39087832 - 39087783
Alignment:
Q  277 tctatgattacttttactgtattactcctatttaattaaccctatttaat 326  Q
    |||||| |||||||||||||||||| ||||||||||||| ||||||||||    
T  39087832 tctatgcttacttttactgtattacccctatttaattaaacctatttaat 39087783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 42781721 - 42781668
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    ||||||||||||| |||||||||||||||||| |||||| | ||||||||||||    
T  42781721 ttttactgtattaatcctatttaattaaccctgtttaatttgatcaaaatgtta 42781668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 1513754 - 1513807
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||||||  ||||||||||||||| | |||||| ||||||||||||||    
T  1513754 ttttactgtattaaccctatttaattaaccatgtttaatttaatcaaaatgtta 1513807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 337
Target Start/End: Original strand, 18091595 - 18091644
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaat 337  Q
    |||||||||||||  ||||||||||||||||| |||||| ||||||||||    
T  18091595 ttttactgtattaaccctatttaattaaccctgtttaatttaatcaaaat 18091644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 25235174 - 25235227
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    ||||||| |||||  |||||||||||||||||| ||||| ||||||||||||||    
T  25235174 ttttactatattaaccctatttaattaaccctacttaatttaatcaaaatgtta 25235227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 326
Target Start/End: Original strand, 38328607 - 38328656
Alignment:
Q  277 tctatgattacttttactgtattactcctatttaattaaccctatttaat 326  Q
    |||||| |||||||||||||||||| ||| ||||||||| ||||||||||    
T  38328607 tctatgcttacttttactgtattacccctgtttaattaaacctatttaat 38328656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 341
Target Start/End: Original strand, 44940743 - 44940781
Alignment:
Q  303 cctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    ||||||||||||||| |||||||| ||||||||||||||    
T  44940743 cctatttaattaaccttatttaatttaatcaaaatgtta 44940781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 19485182 - 19485235
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||||||  ||||||||||||||| | |||||| | ||||||||||||    
T  19485182 ttttactgtattaaccctatttaattaaccatgtttaatttgatcaaaatgtta 19485235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 19487315 - 19487262
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||||||  |||||||||| |||||| |||||| | ||||||||||||    
T  19487315 ttttactgtattaaccctatttaatcaaccctgtttaatttgatcaaaatgtta 19487262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 368
Target Start/End: Complemental strand, 23456458 - 23456394
Alignment:
Q  306 atttaattaaccctatttaatataatcaaaatgtta--tgttatgcaaagtaaaataaacaaatc 368  Q
    |||||||||| | |||||||| ||||||||||||||  ||||||| |||  ||||||||||||||    
T  23456458 atttaattaatcatatttaatttaatcaaaatgttaattgttatggaaatcaaaataaacaaatc 23456394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 28609726 - 28609673
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    ||||||| |||||  |||||||||||| |||| |||||| ||||||||||||||    
T  28609726 ttttactatattaaccctatttaattatccctgtttaatttaatcaaaatgtta 28609673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 288 - 368
Target Start/End: Original strand, 8256511 - 8256592
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta--tgttatgcaaagtaaaataaacaaatc 368  Q
    ||||||| |||||| |||||||||||||||||||||||| ||||||||||||||  ||||||| |||  ||||||||||||||    
T  8256511 ttttactatattac-cctatttaattaaccctatttaatttaatcaaaatgttaattgttatggaaatcaaaataaacaaatc 8256592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 280 - 342
Target Start/End: Original strand, 9754224 - 9754285
Alignment:
Q  280 atgattacttttactgtattactcctatttaattaaccctatttaatataatcaaaatgttat 342  Q
    ||||||| ||||||| |||||| ||||||||||||||||||||| || |||||||||||||||    
T  9754224 atgattaattttactatattacccctatttaattaaccctattt-atttaatcaaaatgttat 9754285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 1827495 - 1827442
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||||||  ||||||||||||||||| |||||| ||||||||||||||    
T  1827495 ttttactgtattaaccctatttaattaaccctgtttaatttaatcaaaatgtta 1827442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 16301333 - 16301280
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||||||  ||||||||||||||||| |||||| ||||||||||||||    
T  16301333 ttttactgtattaaccctatttaattaaccctgtttaatttaatcaaaatgtta 16301280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 16301922 - 16301869
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||||||  ||||||||||||||| |||||||| ||||||||||||||    
T  16301922 ttttactgtattaaccctatttaattaaccatatttaatttaatcaaaatgtta 16301869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 280 - 337
Target Start/End: Complemental strand, 20089453 - 20089396
Alignment:
Q  280 atgattacttttactgtattactcctatttaattaaccctatttaatataatcaaaat 337  Q
    ||||||| |||||||||||||  ||| |||||||||||||||||||| ||||||||||    
T  20089453 atgattaattttactgtattatccctgtttaattaaccctatttaatttaatcaaaat 20089396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 28572193 - 28572140
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||||||  ||||||||||||||||| |||||| ||||||||||||||    
T  28572193 ttttactgtattaaccctatttaattaaccctgtttaatttaatcaaaatgtta 28572140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 19321301 - 19321354
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||||||  ||||||||||||||||| |||||| | ||||||||||||    
T  19321301 ttttactgtattaaccctatttaattaaccctgtttaatttgatcaaaatgtta 19321354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 22198247 - 22198300
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    ||||||| |||||  ||||||||||||||||| |||||| ||||||||||||||    
T  22198247 ttttactatattaaccctatttaattaaccctgtttaatttaatcaaaatgtta 22198300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 28950757 - 28950704
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    ||||||| |||||  |||||||||||||||||| ||||| ||||||||||||||    
T  28950757 ttttactatattaaccctatttaattaaccctacttaatttaatcaaaatgtta 28950704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 33074998 - 33075051
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    ||||||| |||||  ||||||||||||||||| |||||| ||||||||||||||    
T  33074998 ttttactatattaaccctatttaattaaccctgtttaatttaatcaaaatgtta 33075051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 50562449 - 50562396
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||||||  ||||||||||||||| | |||||| ||||||||||||||    
T  50562449 ttttactgtattaaccctatttaattaaccttgtttaatttaatcaaaatgtta 50562396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 367
Target Start/End: Original strand, 35593502 - 35593566
Alignment:
Q  305 tatttaattaaccctatttaatataatcaaaatgtta--tgttatgcaaagtaaaataaacaaat 367  Q
    ||||||||||||||||| |||| |||||||||| |||  ||||||| ||| ||||||||| ||||    
T  35593502 tatttaattaaccctatctaatttaatcaaaatattaattgttatggaaattaaaataaataaat 35593566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 368
Target Start/End: Original strand, 21056163 - 21056218
Alignment:
Q  315 accctatttaatataatcaaaatgtta--tgttatgcaaagtaaaataaacaaatc 368  Q
    |||||||||||| ||||||||||||||  ||||||| |||  ||||||||||||||    
T  21056163 accctatttaatttaatcaaaatgttaattgttatggaaatcaaaataaacaaatc 21056218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 280 - 342
Target Start/End: Complemental strand, 5551 - 5489
Alignment:
Q  280 atgattacttttactgtattactcctatttaattaaccctatttaatataatcaaaatgttat 342  Q
    ||||||| |||||||||||||| | |||||||||||||||| ||||| |||||||||||||||    
T  5551 atgattaattttactgtattacccatatttaattaaccctaattaatttaatcaaaatgttat 5489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 280 - 342
Target Start/End: Original strand, 48808410 - 48808472
Alignment:
Q  280 atgattacttttactgtattactcctatttaattaaccctatttaatataatcaaaatgttat 342  Q
    ||||||| || ||||||||||  |||||||||||||||||||||||| |||||||||||||||    
T  48808410 atgattaattatactgtattagccctatttaattaaccctatttaatttaatcaaaatgttat 48808472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 39404853 - 39404906
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    ||||||||||||||  ||||||||||||||||||||||| ||||||||||||||    
T  39404853 ttttactgtattacctctatttaattaaccctatttaatttaatcaaaatgtta 39404906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 8988248 - 8988195
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||||||  ||||||||||||||||| |||||| ||||||||||||||    
T  8988248 ttttactgtattaaccctatttaattaaccctgtttaatttaatcaaaatgtta 8988195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 20590113 - 20590060
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||||||  ||||||||||||||||| |||||| ||||||||||||||    
T  20590113 ttttactgtattaaccctatttaattaaccctgtttaatttaatcaaaatgtta 20590060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 24548464 - 24548411
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    ||||||||||||| |||||||||||||||||| |||||| | ||||||||||||    
T  24548464 ttttactgtattaatcctatttaattaaccctgtttaatttgatcaaaatgtta 24548411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 24944915 - 24944968
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||||||  ||||||||||||||||| |||||| ||||||||||||||    
T  24944915 ttttactgtattaaccctatttaattaaccctgtttaatttaatcaaaatgtta 24944968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 24947631 - 24947684
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||||||  ||||||||||||||||| |||||| ||||||||||||||    
T  24947631 ttttactgtattaaccctatttaattaaccctctttaatttaatcaaaatgtta 24947684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 37351148 - 37351095
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||||||  ||||||||||||||||| |||||| ||||||||||||||    
T  37351148 ttttactgtattaaccctatttaattaaccctgtttaatttaatcaaaatgtta 37351095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 46105316 - 46105263
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||||||  ||||||||||||||||| |||||| ||||||||||||||    
T  46105316 ttttactgtattaaccctatttaattaaccctgtttaatttaatcaaaatgtta 46105263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 288 - 368
Target Start/End: Complemental strand, 26603515 - 26603433
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta--tgttatgcaaagtaaaataaacaaatc 368  Q
    ||||||| |||||  ||||||||||||||||||| |||| ||||||||||||||  ||||||| |||   |||||||||||||    
T  26603515 ttttactatattaaccctatttaattaaccctatctaatttaatcaaaatgttaattgttatggaaatcgaaataaacaaatc 26603433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 303 - 341
Target Start/End: Original strand, 24944410 - 24944448
Alignment:
Q  303 cctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  24944410 cctatttaattaaccctatttaatttaatcaaaatgtta 24944448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 2117241 - 2117188
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||||||  ||||||||||||||| | |||||| ||||||||||||||    
T  2117241 ttttactgtattaaccctatttaattaaccatgtttaatttaatcaaaatgtta 2117188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 8532007 - 8531954
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    ||||| |||||||  |||||||||||||| ||||||||| ||||||||||||||    
T  8532007 ttttattgtattaaccctatttaattaacactatttaatttaatcaaaatgtta 8531954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 3758429 - 3758376
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||||||  ||||||||||||||| | |||||| | ||||||||||||    
T  3758429 ttttactgtattaaccctatttaattaaccatgtttaatttgatcaaaatgtta 3758376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 52801409 - 52801356
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    ||||||||||||| |||||||||||||| ||| |||||| |||  |||||||||    
T  52801409 ttttactgtattaatcctatttaattaatcctgtttaatttaaataaaatgtta 52801356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 337
Target Start/End: Original strand, 8120283 - 8120334
Alignment:
Q  288 ttttactgtattactcctat--ttaattaaccctatttaatataatcaaaat 337  Q
    |||||||||||||| |||||  |||||||||||| |||||| ||||||||||    
T  8120283 ttttactgtattacccctatatttaattaaccctgtttaatttaatcaaaat 8120334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 368
Target Start/End: Complemental strand, 26602737 - 26602678
Alignment:
Q  311 attaaccctatttaatataatcaaaatgtta--tgttatgcaaagtaaaataaacaaatc 368  Q
    |||||||||||||||| ||||||||||| ||  ||||||| |||  ||||||||||||||    
T  26602737 attaaccctatttaatttaatcaaaatggtaattgttatggaaatcaaaataaacaaatc 26602678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 341
Target Start/End: Original strand, 42348247 - 42348299
Alignment:
Q  289 tttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||| |||||  ||||||||||||| | |||||||| ||||||||||||||    
T  42348247 tttactatattaaccctatttaattaatcatatttaatttaatcaaaatgtta 42348299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 341
Target Start/End: Original strand, 42348527 - 42348579
Alignment:
Q  289 tttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||| |||||  ||||||||||||| | |||||||| ||||||||||||||    
T  42348527 tttactctattaaccctatttaattaatcatatttaatttaatcaaaatgtta 42348579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 341
Target Start/End: Original strand, 46419625 - 46419676
Alignment:
Q  289 tttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||| ||||| ||||||| |||||||| |||||||| ||||||||||||||    
T  46419625 tttactatattaatcctattcaattaacc-tatttaatttaatcaaaatgtta 46419676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 331
Target Start/End: Original strand, 54242843 - 54242895
Alignment:
Q  279 tatgattacttttactgtattactcctatttaattaaccctatttaatataat 331  Q
    |||| |||||||||||||||||| | | ||||||||| |||||||||| ||||    
T  54242843 tatgcttacttttactgtattacccatgtttaattaaacctatttaatttaat 54242895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 1944236 - 1944183
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||||||  |||||||||||||||||||||||| ||||||||||||||    
T  1944236 ttttactgtattaaccctatttaattaaccctatttaatttaatcaaaatgtta 1944183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 287 - 341
Target Start/End: Complemental strand, 41157706 - 41157652
Alignment:
Q  287 cttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    ||||||||||||||   ||||||||||||||||||||||| ||||||||||||||    
T  41157706 cttttactgtattaactctatttaattaaccctatttaatttaatcaaaatgtta 41157652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 7390364 - 7390311
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||||||  ||||||||||||||||| |||||| ||||||||||||||    
T  7390364 ttttactgtattaaccctatttaattaaccctgtttaatttaatcaaaatgtta 7390311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 8161393 - 8161446
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||||||  ||||||||||||||||| |||||| ||||||||||||||    
T  8161393 ttttactgtattaaccctatttaattaaccctgtttaatttaatcaaaatgtta 8161446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 8762060 - 8762007
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||||||  ||||||||||||||||| |||||| ||||||||||||||    
T  8762060 ttttactgtattaaccctatttaattaaccctgtttaatttaatcaaaatgtta 8762007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 280 - 337
Target Start/End: Complemental strand, 18493211 - 18493154
Alignment:
Q  280 atgattacttttactgtattactcctatttaattaaccctatttaatataatcaaaat 337  Q
    ||||||| ||||||| |||||| ||| |||||||||||||||||||| ||||||||||    
T  18493211 atgattaattttactatattacccctgtttaattaaccctatttaatctaatcaaaat 18493154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 25834992 - 25835045
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||||||  ||||||||||||||||| |||||| ||||||||||||||    
T  25834992 ttttactgtattaaccctatttaattaaccctgtttaatttaatcaaaatgtta 25835045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 41978639 - 41978586
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||||||  ||||||||||||||||| |||||| ||||||||||||||    
T  41978639 ttttactgtattaaccctatttaattaaccctgtttaatttaatcaaaatgtta 41978586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 4465346 - 4465399
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||||||  ||||||||||||||| | |||||| ||||||||||||||    
T  4465346 ttttactgtattaaccctatttaattaaccatgtttaatttaatcaaaatgtta 4465399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 12761284 - 12761231
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||||||  ||||||||||||||||| |||||| |||| |||||||||    
T  12761284 ttttactgtattaaccctatttaattaaccctgtttaatttaattaaaatgtta 12761231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 32845623 - 32845570
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||| ||  ||||||||||||||||| |||||| ||||||||||||||    
T  32845623 ttttactgtagtaaccctatttaattaaccctgtttaatttaatcaaaatgtta 32845570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 41532708 - 41532761
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||||||  ||||||||||||||| | |||||| ||||||||||||||    
T  41532708 ttttactgtattaaccctatttaattaaccatgtttaatttaatcaaaatgtta 41532761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 44381661 - 44381714
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||||||  ||||||||||||| ||| |||||| ||||||||||||||    
T  44381661 ttttactgtattaaccctatttaattaaacctgtttaatttaatcaaaatgtta 44381714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 322
Target Start/End: Complemental strand, 41843871 - 41843828
Alignment:
Q  279 tatgattacttttactgtattactcctatttaattaaccctatt 322  Q
    |||| |||||||||||||||||| ||||||||||||| ||||||    
T  41843871 tatgcttacttttactgtattacccctatttaattaaacctatt 41843828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 331
Target Start/End: Complemental strand, 41844028 - 41843974
Alignment:
Q  277 tctatgattacttttactgtattactcctatttaattaaccctatttaatataat 331  Q
    |||||| ||||||||||||||||||  || ||||||||| |||||||||| ||||    
T  41844028 tctatgtttacttttactgtattacctctgtttaattaaacctatttaatttaat 41843974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 331
Target Start/End: Complemental strand, 41844227 - 41844173
Alignment:
Q  277 tctatgattacttttactgtattactcctatttaattaaccctatttaatataat 331  Q
    |||||| |||||||||||||||||| | | ||||||||| |||||||||| ||||    
T  41844227 tctatgcttacttttactgtattacccatgtttaattaaacctatttaatttaat 41844173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 367
Target Start/End: Complemental strand, 34894867 - 34894787
Alignment:
Q  289 tttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta--tgttatgcaaagtaaaataaacaaat 367  Q
    |||||| |||||  ||||||||||||| | |||||||| ||||||||||||||  ||||||| |||  ||||| |||||||    
T  34894867 tttactatattaaccctatttaattaatcatatttaatttaatcaaaatgttaattgttatggaaatcaaaatgaacaaat 34894787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 36777635 - 36777582
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||||||  ||||||||||||||| | |||||| | ||||||||||||    
T  36777635 ttttactgtattaaccctatttaattaaccatgtttaatttgatcaaaatgtta 36777582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 24683272 - 24683325
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||||||  |||||||||||||||||||||||| ||||||||||||||    
T  24683272 ttttactgtattaaccctatttaattaaccctatttaatttaatcaaaatgtta 24683325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 326
Target Start/End: Original strand, 15236513 - 15236564
Alignment:
Q  275 aatctatgattacttttactgtattactcctatttaattaaccctatttaat 326  Q
    |||||||| |||||||||||||||||| ||| ||||||||| ||||||||||    
T  15236513 aatctatgcttacttttactgtattacccctgtttaattaaacctatttaat 15236564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 9150691 - 9150638
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    ||||||| |||||  ||||||||||||||||| |||||| ||||||||||||||    
T  9150691 ttttactatattaaccctatttaattaaccctgtttaatttaatcaaaatgtta 9150638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 29468493 - 29468440
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    ||||||| |||||  ||||||||||||||||| |||||| ||||||||||||||    
T  29468493 ttttactatattaaccctatttaattaaccctgtttaatttaatcaaaatgtta 29468440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 35156374 - 35156427
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||||||  ||||||||||||||||| |||||| | ||||||||||||    
T  35156374 ttttactgtattaaccctatttaattaaccctgtttaatttgatcaaaatgtta 35156427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 44805624 - 44805571
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||||||  ||||||||||||||||| |||||| | ||||||||||||    
T  44805624 ttttactgtattaaccctatttaattaaccctgtttaatttgatcaaaatgtta 44805571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 49145026 - 49145079
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||||||  ||||||||||||||| | |||||| ||||||||||||||    
T  49145026 ttttactgtattaaccctatttaattaaccatgtttaatttaatcaaaatgtta 49145079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 322
Target Start/End: Original strand, 15236368 - 15236411
Alignment:
Q  279 tatgattacttttactgtattactcctatttaattaaccctatt 322  Q
    |||| |||||||||||||||||| ||||||||||||| ||||||    
T  15236368 tatgcttacttttactgtattacccctatttaattaaacctatt 15236411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 341
Target Start/End: Complemental strand, 4849483 - 4849445
Alignment:
Q  303 cctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    ||||||||||||||||| |||||| ||||||||||||||    
T  4849483 cctatttaattaaccctgtttaatttaatcaaaatgtta 4849445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 7855966 - 7856019
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    ||||||||||||| |||||||||||||||  | |||||| | ||||||||||||    
T  7855966 ttttactgtattaatcctatttaattaacattgtttaatttgatcaaaatgtta 7856019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 337
Target Start/End: Original strand, 33637649 - 33637698
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaat 337  Q
    |||||||||||||  |||||||||||||| || |||||| ||||||||||    
T  33637649 ttttactgtattaaccctatttaattaactctgtttaatttaatcaaaat 33637698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 368
Target Start/End: Complemental strand, 36006596 - 36006515
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta--tgttatgcaaagtaaaataaacaaatc 368  Q
    ||||||| |||||| ||||||||||||||||||| |||| ||||||||||||||  ||||||| |||  ||||||||||||||    
T  36006596 ttttactatattac-cctatttaattaaccctatctaatttaatcaaaatgttaattgttatgaaaatcaaaataaacaaatc 36006515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 8527061 - 8527114
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    ||||||||||||| |||||||||||||||||| |||||| | ||||||||||||    
T  8527061 ttttactgtattaatcctatttaattaaccctgtttaatttgatcaaaatgtta 8527114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 9373241 - 9373188
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    ||||||| |||||  |||||||||||||||||||||||| ||||||||||||||    
T  9373241 ttttactatattaaccctatttaattaaccctatttaatttaatcaaaatgtta 9373188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 35855944 - 35855891
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||||||  ||||||||||||||||| |||||| ||||||||||||||    
T  35855944 ttttactgtattaaccctatttaattaaccctgtttaatttaatcaaaatgtta 35855891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 39093719 - 39093666
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    ||||||||||||| |||||||||||||||||| |||||| |||| |||||||||    
T  39093719 ttttactgtattaatcctatttaattaaccctgtttaatttaattaaaatgtta 39093666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 40821977 - 40822030
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    ||||||| |||||  |||||||||||||||||||||||| ||||||||||||||    
T  40821977 ttttactatattaaccctatttaattaaccctatttaatttaatcaaaatgtta 40822030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 277 - 326
Target Start/End: Original strand, 40822361 - 40822410
Alignment:
Q  277 tctatgattacttttactgtattactcctatttaattaaccctatttaat 326  Q
    |||||| |||||||||||||||||||||| ||||||||| ||||||||||    
T  40822361 tctatgtttacttttactgtattactcctgtttaattaaacctatttaat 40822410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 55293656 - 55293709
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||||||  ||||||||||||||||| |||||| ||||||||||||||    
T  55293656 ttttactgtattaagcctatttaattaaccctgtttaatttaatcaaaatgtta 55293709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 19368327 - 19368380
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||||||  ||||||||||||||| |||||||| | ||||||||||||    
T  19368327 ttttactgtattaaccctatttaattaaccatatttaattttatcaaaatgtta 19368380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 29529746 - 29529799
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||||||  ||||||||||||||||| |||||| | ||||||||||||    
T  29529746 ttttactgtattaaccctatttaattaaccctgtttaatttgatcaaaatgtta 29529799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 326
Target Start/End: Original strand, 40822201 - 40822250
Alignment:
Q  277 tctatgattacttttactgtattactcctatttaattaaccctatttaat 326  Q
    |||||| |||||||||||||||||||| | ||||||||| ||||||||||    
T  40822201 tctatgcttacttttactgtattactcttgtttaattaaacctatttaat 40822250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 53801636 - 53801583
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||||||  ||||||||||||||| | |||||| ||||||||||||||    
T  53801636 ttttactgtattaaccctatttaattaaccttgtttaatttaatcaaaatgtta 53801583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 368
Target Start/End: Complemental strand, 9374048 - 9373989
Alignment:
Q  311 attaaccctatttaatataatcaaaatgtta--tgttatgcaaagtaaaataaacaaatc 368  Q
    |||||||||||||||| ||||||||||||||  ||||||| |||  ||||||||||||||    
T  9374048 attaaccctatttaatttaatcaaaatgttaattgttatggaaatcaaaataaacaaatc 9373989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 368
Target Start/End: Original strand, 51656460 - 51656519
Alignment:
Q  311 attaaccctatttaatataatcaaaatgtta--tgttatgcaaagtaaaataaacaaatc 368  Q
    |||||||||||||||| ||||||||||||||  ||||||| |||  ||||||||||||||    
T  51656460 attaaccctatttaatttaatcaaaatgttaattgttatggaaatcaaaataaacaaatc 51656519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 337
Target Start/End: Complemental strand, 53522336 - 53522285
Alignment:
Q  288 ttttactgtattactcctat--ttaattaaccctatttaatataatcaaaat 337  Q
    |||||||||||||| |||||  ||||||||||||||||||| ||||||||||    
T  53522336 ttttactgtattacccctatatttaattaaccctatttaatttaatcaaaat 53522285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 331
Target Start/End: Complemental strand, 36946633 - 36946579
Alignment:
Q  277 tctatgattacttttactgtattactcctatttaattaaccctatttaatataat 331  Q
    |||||| ||||||||||| |||||| ||| ||||||||| |||||||||| ||||    
T  36946633 tctatgcttacttttactctattacccctgtttaattaaacctatttaatttaat 36946579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 368
Target Start/End: Complemental strand, 53521824 - 53521765
Alignment:
Q  311 attaaccctatttaatataatcaaaatgtta--tgttatgcaaagtaaaataaacaaatc 368  Q
    |||||||||||||||| ||||||||||||||  ||||||| |||   |||||||||||||    
T  53521824 attaaccctatttaatttaatcaaaatgttaattgttatggaaatcgaaataaacaaatc 53521765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 337
Target Start/End: Complemental strand, 53522037 - 53521986
Alignment:
Q  288 ttttactgtattactcctat--ttaattaaccctatttaatataatcaaaat 337  Q
    |||||||||||||| |||||  |||||||| |||||||||| ||||||||||    
T  53522037 ttttactgtattacccctatatttaattaatcctatttaatttaatcaaaat 53521986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 753064 - 753117
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||||||  ||||||||||||||||| |||||| ||||||||||||||    
T  753064 ttttactgtattaaccctatttaattaaccctgtttaatttaatcaaaatgtta 753117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 277 - 326
Target Start/End: Complemental strand, 35394160 - 35394111
Alignment:
Q  277 tctatgattacttttactgtattactcctatttaattaaccctatttaat 326  Q
    |||||| |||||||||||||||||| ||||||||||||| ||||||||||    
T  35394160 tctatgcttacttttactgtattacccctatttaattaaacctatttaat 35394111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 277 - 342
Target Start/End: Complemental strand, 38096859 - 38096794
Alignment:
Q  277 tctatgattacttttactgtattactcctatttaattaaccctatttaatataatcaaaatgttat 342  Q
    |||||| |||||||||||||||||| | | ||||||||| |||||||||| |||||||||| ||||    
T  38096859 tctatgcttacttttactgtattacccatgtttaattaaacctatttaatttaatcaaaatcttat 38096794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 43137269 - 43137322
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||||||  ||||||||||||||||| |||||| ||||||||||||||    
T  43137269 ttttactgtattaaccctatttaattaaccctgtttaatttaatcaaaatgtta 43137322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 2181894 - 2181841
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    ||||| ||||||| |||||||||||||| ||| |||||| ||||||||||||||    
T  2181894 ttttaatgtattaatcctatttaattaatcctgtttaatttaatcaaaatgtta 2181841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 2182633 - 2182580
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||| ||||||||  |||||||||||||| ||||||||| ||||||||||||||    
T  2182633 ttttcctgtattaaccctatttaattaactctatttaatttaatcaaaatgtta 2182580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 3087417 - 3087470
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    ||||||||||||| |||||||||||||||| | |||||| | ||||||||||||    
T  3087417 ttttactgtattaatcctatttaattaaccatgtttaatttgatcaaaatgtta 3087470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 12419441 - 12419493
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||||||  |||||||||||||||| ||||||| ||||||||||||||    
T  12419441 ttttactgtattaaccctatttaattaaccc-atttaatttaatcaaaatgtta 12419493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 26601545 - 26601598
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||||||  ||||||||||||||| | |||||| ||||||||||||||    
T  26601545 ttttactgtattaaccctatttaattaaccatgtttaatttaatcaaaatgtta 26601598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 337
Target Start/End: Original strand, 34726258 - 34726307
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaat 337  Q
    |||||||||||||  ||||||||||||||||| |||||| ||||||||||    
T  34726258 ttttactgtattaaccctatttaattaaccctgtttaatttaatcaaaat 34726307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 331
Target Start/End: Complemental strand, 38097005 - 38096953
Alignment:
Q  279 tatgattacttttactgtattactcctatttaattaaccctatttaatataat 331  Q
    |||| |||||||||||||||||| ||| ||||||||| |||||||||| ||||    
T  38097005 tatgcttacttttactgtattacccctgtttaattaaacctatttaatttaat 38096953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 322
Target Start/End: Complemental strand, 17547765 - 17547722
Alignment:
Q  279 tatgattacttttactgtattactcctatttaattaaccctatt 322  Q
    |||| |||||||||||||||||| ||||||||||||| ||||||    
T  17547765 tatgcttacttttactgtattacccctatttaattaaacctatt 17547722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 322
Target Start/End: Complemental strand, 35393679 - 35393636
Alignment:
Q  279 tatgattacttttactgtattactcctatttaattaaccctatt 322  Q
    |||| |||||||||||||||||| ||||||||||||| ||||||    
T  35393679 tatgcttacttttactgtattacccctatttaattaaacctatt 35393636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 337
Target Start/End: Original strand, 6304057 - 6304106
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaat 337  Q
    |||||||||||||  ||||||||||||| ||| |||||| ||||||||||    
T  6304057 ttttactgtattaaccctatttaattaatcctgtttaatttaatcaaaat 6304106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 36885777 - 36885830
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||||||  ||||||||||||||| | |||||| | ||||||||||||    
T  36885777 ttttactgtattaaccctatttaattaaccatgtttaatttgatcaaaatgtta 36885830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 42976904 - 42976957
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||||||  ||||||||||||||| | |||||| | ||||||||||||    
T  42976904 ttttactgtattaaccctatttaattaaccatgtttaatttgatcaaaatgtta 42976957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 368
Target Start/End: Original strand, 3086692 - 3086751
Alignment:
Q  311 attaaccctatttaatataatcaaaatgtta--tgttatgcaaagtaaaataaacaaatc 368  Q
    |||||||||||||||| ||||||||||||||  ||||| | |||  ||||||||||||||    
T  3086692 attaaccctatttaatttaatcaaaatgttaattgttagggaaatcaaaataaacaaatc 3086751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 326
Target Start/End: Complemental strand, 17547620 - 17547568
Alignment:
Q  275 aatctatgattacttttactgtatta-ctcctatttaattaaccctatttaat 326  Q
    |||||||| ||||||||||||||||| | ||| ||||||||| ||||||||||    
T  17547620 aatctatgcttacttttactgtattaccccctgtttaattaaacctatttaat 17547568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 368
Target Start/End: Complemental strand, 38937438 - 38937379
Alignment:
Q  311 attaaccctatttaatataatcaaaatgtta--tgttatgcaaagtaaaataaacaaatc 368  Q
    |||||||||||||||| ||||||||||||||  ||||||| |||   |||||||||||||    
T  38937438 attaaccctatttaatttaatcaaaatgttaattgttatggaaatcgaaataaacaaatc 38937379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 326
Target Start/End: Complemental strand, 13619 - 13572
Alignment:
Q  279 tatgattacttttactgtattactcctatttaattaaccctatttaat 326  Q
    |||| |||||||||||||||||| ||||||||||||| ||||||||||    
T  13619 tatgcttacttttactgtattacccctatttaattaaacctatttaat 13572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 326
Target Start/End: Complemental strand, 14071 - 14029
Alignment:
Q  284 ttacttttactgtattactcctatttaattaaccctatttaat 326  Q
    |||||||||||||||||| ||| ||||||||| ||||||||||    
T  14071 ttacttttactgtattacccctgtttaattaaacctatttaat 14029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 326
Target Start/End: Complemental strand, 13459 - 13410
Alignment:
Q  277 tctatgattacttttactgtattactcctatttaattaaccctatttaat 326  Q
    |||||| |||||||||||||||||| ||| ||||||||| ||| ||||||    
T  13459 tctatgcttacttttactgtattacccctgtttaattaaacctttttaat 13410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2127 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold2127
Description:

Target: scaffold2127; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 751 - 698
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||||||  ||||||||||||||| | |||||| ||||||||||||||    
T  751 ttttactgtattaaccctatttaattaaccatgtttaatttaatcaaaatgtta 698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 3830 - 3883
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    ||||||| |||||  ||||||||||||||||| |||||| ||||||||||||||    
T  3830 ttttactatattaaccctatttaattaaccctgtttaatttaatcaaaatgtta 3883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 292 - 341
Target Start/End: Complemental strand, 232354 - 232305
Alignment:
Q  292 actgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||  ||||||||||||||||| |||||| ||||||||||||||    
T  232354 actgtattaaccctatttaattaaccctgtttaatttaatcaaaatgtta 232305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 336
Target Start/End: Complemental strand, 232992 - 232944
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaa 336  Q
    |||||||||||||  |||||| ||||| ||||||||||| |||||||||    
T  232992 ttttactgtattaaccctattaaattatccctatttaatttaatcaaaa 232944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 368
Target Start/End: Complemental strand, 200945 - 200886
Alignment:
Q  311 attaaccctatttaatataatcaaaatgtta--tgttatgcaaagtaaaataaacaaatc 368  Q
    |||||||||||||||| || |||||||||||  ||||||| ||| |||||||||||||||    
T  200945 attaaccctatttaatttattcaaaatgttaattgttatggaaattaaaataaacaaatc 200886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 9589 - 9642
Alignment:
Q  288 ttttactgtattactcctatttaattaaccctatttaatataatcaaaatgtta 341  Q
    |||||||||||||  |||||||||||| || | |||||| ||||||||||||||    
T  9589 ttttactgtattaaccctatttaattatccatgtttaatttaatcaaaatgtta 9642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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