View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20129_low_9 (Length: 273)
Name: NF20129_low_9
Description: NF20129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20129_low_9 |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold0854 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 4229112 - 4229384
Alignment:
| Q |
1 |
atggaaaaactcccgtaatcgaaattcaaaattttaattagtcaatgtttatttttaataggaggaatgataactagacacaaaattttagacataatac |
100 |
Q |
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| T |
4229112 |
atggaaaaactcccgtaatcgaaattcaaaattttaattagtcaatgtctatttttaataggaggaatgataactagatacaaaattttagacacaatac |
4229211 |
T |
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| Q |
101 |
caacaccatgggcttttttgtcatttcaaccttaagttaagggcaactttgtaaaaccactacacaccctcttctatttctctacctcgtgccccattct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
4229212 |
caacaccatgggcttttttgtcatttcaaccttaagttaagggcagctttgtaaaaccaatacacaccctcttctatttctctaccccgtgccccattct |
4229311 |
T |
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| Q |
201 |
ctcctctgtttggtttctctcagaactgaaccacaagtccacaaccatcgtcctcgcaccacctccgtcctcc |
273 |
Q |
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| T |
4229312 |
ctcctctgtttagtttctctcagaactgaaccacaagtccacaaccaccgtcctcgcaccacctccgtcctcc |
4229384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 38301207 - 38301270
Alignment:
| Q |
62 |
gaggaatgataactagacacaaaattttagacataataccaacaccatgggcttttttgtcattt |
126 |
Q |
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|||||| ||||||||| |||||| |||| |||| |||||||||||||||| | ||||||||||| |
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| T |
38301207 |
gaggaacgataactagccacaaa-ttttggacacaataccaacaccatggacagttttgtcattt |
38301270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0854 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: scaffold0854
Description:
Target: scaffold0854; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 62 - 273
Target Start/End: Original strand, 1016 - 1227
Alignment:
| Q |
62 |
gaggaatgataactagacacaaaattttagacataataccaacaccatgggcttttttgtcatttcaaccttaagttaagggcaactttgtaaaaccact |
161 |
Q |
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| T |
1016 |
gaggaatgataattagacacaaaattttagacacaatatcaacaccatgggcttttttgtcatttcaaccttaagttaagggcagctttgtaaaaccact |
1115 |
T |
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| Q |
162 |
acacaccctcttctatttctctacctcgtgccccattctctcctctgtttggtttctctcagaactgaaccacaagtccacaaccatcgtcctcgcacca |
261 |
Q |
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| T |
1116 |
acacaccctcttctatttctctacctcgtgccccattctctcctctgtttagtttctctcagaactgaaccacaagtccacaaccaccgtcctcgcacca |
1215 |
T |
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| Q |
262 |
cctccgtcctcc |
273 |
Q |
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|||||||||||| |
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| T |
1216 |
cctccgtcctcc |
1227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 61 - 273
Target Start/End: Complemental strand, 4154778 - 4154562
Alignment:
| Q |
61 |
ggaggaatgataactagacacaaaattttagacataataccaacaccatgggcttttttgtcatttcaaccttaagttaagggcaactttgtaaaaccac |
160 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
4154778 |
ggaggaatgataactagacacaaaattttagacacaataccaacaccataggcaattttgttatttcaaccttaagttaagggcagctttgtaaaaccac |
4154679 |
T |
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| Q |
161 |
tacacaccctcttctatttctctacctcgtgcc----ccattctctcctctgtttggtttctctcagaactgaaccacaagtccacaaccatcgtcctcg |
256 |
Q |
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||| ||||||||||| ||||||||||||||||| ||||||||| ||||||| |||||||||| |||||||||||||||||| ||||| ||||||| |
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| T |
4154678 |
tacgcaccctcttctgtttctctacctcgtgccatattcattctctcttctgtttagtttctctcataactgaaccacaagtccataaccactgtcctcg |
4154579 |
T |
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| Q |
257 |
caccacctccgtcctcc |
273 |
Q |
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|| |||||||||||||| |
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| T |
4154578 |
caacacctccgtcctcc |
4154562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 63 - 132
Target Start/End: Original strand, 41642871 - 41642940
Alignment:
| Q |
63 |
aggaatgataactagacacaaaattttagacataataccaacaccatgggcttttttgtcatttcaacct |
132 |
Q |
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|||||||||||||||||||||||||||||||| |||| ||||| ||||| | |||||| |||||||||| |
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| T |
41642871 |
aggaatgataactagacacaaaattttagacacaatatcaacatcatggacaattttgttatttcaacct |
41642940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 53 - 273
Target Start/End: Complemental strand, 53305368 - 53305146
Alignment:
| Q |
53 |
ttttaataggaggaatgataactagacacaaaattttagacataataccaacaccatgggcttttttgtcatttcaaccttaagttaagggcaactttgt |
152 |
Q |
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|||||| | ||||||||||||||||||||||||||||| ||| |||||||||| | | |||||||||||||||||||||||||||||| |||||| |
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| T |
53305368 |
ttttaaaacgaggaatgataactagacacaaaattttaaacacaataccaacatccag-----ttttgtcatttcaaccttaagttaagggcagctttgt |
53305274 |
T |
|
| Q |
153 |
aaaaccactacacaccctcttctatttctctacctcgtgcc-------ccattctctcctctgtttggtttctctcagaactgaaccacaagtccacaac |
245 |
Q |
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|||||||| |||||||||||| | ||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
53305273 |
aaaaccaccacacaccctcttttgtttctctacctcgtgccacatcattcattctctcttctgtttagtttctctcagaactgaaccacaagtccataac |
53305174 |
T |
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| Q |
246 |
catcgtcctcgcaccacctccgtcctcc |
273 |
Q |
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|| ||||||||| |||||||||||||| |
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| T |
53305173 |
cactgtcctcgcaacacctccgtcctcc |
53305146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 156
Target Start/End: Complemental strand, 26335653 - 26335554
Alignment:
| Q |
57 |
aataggaggaatgataactagacacaaaattttagacataataccaacaccatgggcttttttgtcatttcaaccttaagttaagggcaactttgtaaaa |
156 |
Q |
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|||| |||||||||||| | ||||||||| || ||| || | ||||||||||| | |||||||||||||||| ||| ||||||||| ||||||||| |
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| T |
26335653 |
aataagaggaatgataagtgaacacaaaatatttaacacaaaaacaacaccatggacagttttgtcatttcaaccataaaataagggcaattttgtaaaa |
26335554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 62 - 172
Target Start/End: Complemental strand, 14699733 - 14699623
Alignment:
| Q |
62 |
gaggaatgataactagacacaaaattttagacataataccaacaccatgggcttttttgtcatttcaaccttaagttaagggcaactttgtaaaaccact |
161 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||| || | |||||| || ||||||||||| |
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| T |
14699733 |
gaggaatgataactagacacaaaattttagacacaataccaacaccatgggcaattttgttatttcaacctcaaatcgagggcagtttggtaaaaccact |
14699634 |
T |
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| Q |
162 |
acacaccctct |
172 |
Q |
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|||||| |||| |
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| T |
14699633 |
acacacactct |
14699623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 66 - 174
Target Start/End: Original strand, 8551572 - 8551680
Alignment:
| Q |
66 |
aatgataactagacacaaaattttagacataataccaacaccatgggcttttttgtcatttcaaccttaagttaagggcaactttgtaaaaccactacac |
165 |
Q |
| |
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|||||||| |||||||||||||||||||| |||||||||||||||||| |||||| |||||||||| || | ||||||| || ||||||||||||||| |
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| T |
8551572 |
aatgataattagacacaaaattttagacacaataccaacaccatgggcaattttgttatttcaacctcaaatcaagggcagtttggtaaaaccactacac |
8551671 |
T |
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| Q |
166 |
accctcttc |
174 |
Q |
| |
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|| |||||| |
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| T |
8551672 |
actctcttc |
8551680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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