View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2012_low_1 (Length: 394)
Name: NF2012_low_1
Description: NF2012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2012_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 16 - 379
Target Start/End: Complemental strand, 6145943 - 6145580
Alignment:
| Q |
16 |
tcaaaggatcggtgctggaatggttttttcagttttaacaatgatagtagcagctttggtagagnnnnnnnggcttaaagttgttgatatgaatccatca |
115 |
Q |
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||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||| |
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| T |
6145943 |
tcaaaggattggtattggaatggttttttcggttttaacaatgatagtagcagctttggtcgagaaaaaaaggcttaaagttgttgagatgaatccatca |
6145844 |
T |
|
| Q |
116 |
catggttcactttcaatgagtgttttttggttagcgccgcagtttctaattatcggttttggcgacggtttggcgctcgttggtttacaagaatatttct |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6145843 |
catggttcactttcaatgagtgttttttggttagcgccgcagtttctaattatcggttttggcgacggtttggcgcttgttggtttacaagaatatttct |
6145744 |
T |
|
| Q |
216 |
atgaccaagttcccgattcaatgagaagtttgggaattggactttaccttagtgtgattggagctgcaaattttctaagtagtttgttgataacaattgt |
315 |
Q |
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|||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6145743 |
atgatcaagttcctgattcaatgagaagcttgggaattggactttaccttagtgtgattggagctgcaaattttctaagtagtttgttgataacaattgt |
6145644 |
T |
|
| Q |
316 |
tgatcatgtgacaagtaaaagtggtaaaagttggtttggtgaagatttgaatagtagtcgtttg |
379 |
Q |
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| T |
6145643 |
tgatcatgtgacaagtaaaagtggtaaaagttggtttggtgaagatttgaatagtagtcgtttg |
6145580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 138 - 373
Target Start/End: Complemental strand, 23692644 - 23692409
Alignment:
| Q |
138 |
ttttttggttagcgccgcagtttctaattatcggttttggcgacggtttggcgctcgttggtttacaagaatatttctatgaccaagttcccgattcaat |
237 |
Q |
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| T |
23692644 |
ttttttggttggctccacaatttctaattattggttttggtgatggatttacccttgtgggattacaagaatatttctatgaccaagttcctgattcaat |
23692545 |
T |
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| Q |
238 |
gagaagtttgggaattggactttaccttagtgtgattggagctgcaaattttctaagtagtttgttgataacaattgttgatcatgtgacaagtaaaagt |
337 |
Q |
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|||||| || || || | |||| | |||||||||||||||||||||||| | |||||| ||||||||||||||||||||||| | |||| |||| | |
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| T |
23692544 |
gagaagcttaggtatagctttttatttaagtgtgattggagctgcaaattttattagtagtgtgttgataacaattgttgatcatataacaaagaaaaat |
23692445 |
T |
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| Q |
338 |
ggtaaaagttggtttggtgaagatttgaatagtagt |
373 |
Q |
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| T |
23692444 |
gggaagagttggtttggtaaggatttgaatagtagt |
23692409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 194 - 354
Target Start/End: Complemental strand, 31074931 - 31074771
Alignment:
| Q |
194 |
gttggtttacaagaatatttctatgaccaagttcccgattcaatgagaagtttgggaattggactttaccttagtgtgattggagctgcaaattttctaa |
293 |
Q |
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|||||||||||||| |||||||||| ||||||||| || ||||||| ||||||||||| | | | || |||||||||||||||| || || ||| ||| |
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| T |
31074931 |
gttggtttacaagagtatttctatggccaagttcctgactcaatgaagagtttgggaatggcattatatcttagtgtgattggagttggaagtttcttaa |
31074832 |
T |
|
| Q |
294 |
gtagtttgttgataacaattgttgatcatgtgacaagtaaaagtggtaaaagttggtttgg |
354 |
Q |
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| T |
31074831 |
gtagttttttaatcactattgtggatcaagtgacagaaaagaatggtaaaagttggattgg |
31074771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 194 - 278
Target Start/End: Complemental strand, 31063521 - 31063437
Alignment:
| Q |
194 |
gttggtttacaagaatatttctatgaccaagttcccgattcaatgagaagtttgggaattggactttaccttagtgtgattggag |
278 |
Q |
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|||||||||||||| |||||||| ||||||||||| || ||||||||||| || ||||| | | | || |||||||||||||||| |
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| T |
31063521 |
gttggtttacaagagtatttctacgaccaagttcctgactcaatgagaagcttaggaatggcattatatcttagtgtgattggag |
31063437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 31057439 - 31057383
Alignment:
| Q |
194 |
gttggtttacaagaatatttctatgaccaagttcccgattcaatgagaagtttggga |
250 |
Q |
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|||||| ||||||| |||||||| ||| ||||||| |||||||||||||| |||||| |
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| T |
31057439 |
gttggtatacaagagtatttctacgacgaagttcctgattcaatgagaagcttggga |
31057383 |
T |
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