View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2012_low_2 (Length: 342)
Name: NF2012_low_2
Description: NF2012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2012_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 326
Target Start/End: Complemental strand, 54927978 - 54927669
Alignment:
| Q |
17 |
tgctatgctcttggctgggagctaattgagaatataaattactgaagcaatcaaattaagggaattcaaaattaaaattttgaannnnnnncttcctttt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
54927978 |
tgctatgctcttggctgggagctaattgagaatataaattactgaaacaatcaaattaagggaattcaaaattaaaattttgaatttttttcttcctttt |
54927879 |
T |
|
| Q |
117 |
gattggatgtcacattaacaagtagaatgaaaatgtagagaagattatgctattgcatatacaaaaatattctcttgagttaatgtttcaaaagaataag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54927878 |
gattggatgtcacattaacaagtagaatgaaaatgtagagaagattatgctattgcatatacaaaaatattctcttgagttaatgtttcaaaagaataag |
54927779 |
T |
|
| Q |
217 |
tatgtaatatacaaaagtactannnnnnnnnnnnnnnnnncactttcgtgttattcattgtggtggaattaaggtttaatgtaataagtatgtaatgtat |
316 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54927778 |
tatgtaatatacaaaagtactatttttttcttctttttttcactttcgtgttattcattgtggtggaattaaggtttaatgtaataagtatgtaatgtat |
54927679 |
T |
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| Q |
317 |
gggtgggtag |
326 |
Q |
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|||||||||| |
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| T |
54927678 |
gggtgggtag |
54927669 |
T |
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