View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2012_low_5 (Length: 244)
Name: NF2012_low_5
Description: NF2012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2012_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 6146016 - 6146253
Alignment:
| Q |
1 |
acagaaattaacataccaatagcggaaatagtgaaaattgaagctggtggaatctcaaaaccatgtcctatttttctattcattatattaccttgcttga |
100 |
Q |
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| T |
6146016 |
acagaaattatcataccaatagcggaaatagtgaaaattgaagcgggtggaatctcgaaaccatgtcctatttttctattcattatattaccttgcttga |
6146115 |
T |
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| Q |
101 |
taaagaaagttgatgtttgtgcagcacacattccaaatggtaaagtaaatatccaaattgggatcatgttgatcataagcttcatttcttcaactctagt |
200 |
Q |
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| T |
6146116 |
taaagaaagttgatgtttgtgcagcacacattccaaatggtaaagtaaatatccaaattgggatcatgttgatcataagcttcatttcttcaactctagt |
6146215 |
T |
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| Q |
201 |
gactgttgctagtttccatggactttgttcctatgcta |
238 |
Q |
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| T |
6146216 |
gactgttgctagtttccatggactttgttcctttgcta |
6146253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 31 - 227
Target Start/End: Original strand, 23692851 - 23693047
Alignment:
| Q |
31 |
gtgaaaattgaagctggtggaatctcaaaaccatgtcctatttttctattcattatattaccttgcttgataaagaaagttgatgtttgtgcagcacaca |
130 |
Q |
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|||||||||||||||||||||| ||||| | | ||||| ||||||||||||||| || ||| ||||| ||||| |||||||||||||| ||| | |
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| T |
23692851 |
gtgaaaattgaagctggtggaagttcaaacctttcacctatctttctattcattatagcactttgtttgatgaagaatgttgatgtttgtgctacactta |
23692950 |
T |
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| Q |
131 |
ttccaaatggtaaagtaaatatccaaattgggatcatgttgatcataagcttcatttcttcaactctagtgactgttgctagtttccatggactttg |
227 |
Q |
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| T |
23692951 |
ttccaaatggtatagtgaatacccaaattggtatcatattgattataagcttcatttcttcaactgtagttacagttgttagcttccatggactttg |
23693047 |
T |
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