View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20130_low_1 (Length: 323)
Name: NF20130_low_1
Description: NF20130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20130_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 4 - 257
Target Start/End: Original strand, 8188727 - 8188980
Alignment:
| Q |
4 |
gttaggatataacattttatttggcatcattcaaatcatttgcatttacaggagagaggggtgcaaaatctggagaagatatatttaaagatactggtgg |
103 |
Q |
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| T |
8188727 |
gttaggatataacattttatttggcatcattcaaatcatttgcatttacaggagagaggggtgcaaaatctggagaagatatatttaaagatactggtgg |
8188826 |
T |
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| Q |
104 |
gggagtagtaggcattggcagacttgatggagttcttccagctgcagcattcttcgccatctgccaaaatgttaaaatcaattgtcaattgtcaaatact |
203 |
Q |
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| T |
8188827 |
gggagtagtaggcattggcagacttgatggagttcttccagctgcagcattcttcgccatctgccaaaatgttaaaatcaattgtcaattgtcaaatgct |
8188926 |
T |
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| Q |
204 |
caactgtactcacaatcatgaacatagaaaaacataatgcaggttctgttttaa |
257 |
Q |
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| T |
8188927 |
caactgtactcacaatcatgaacatagaaaaacataatgcaggttctgttttaa |
8188980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 261 - 313
Target Start/End: Original strand, 8189010 - 8189062
Alignment:
| Q |
261 |
agtgcgaaatgcctcactaacattttgtagctgattaaatatgtcaacctatg |
313 |
Q |
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| T |
8189010 |
agtgcgaaatgcctcactaacattttgtagctgattaaatatgtcaacctatg |
8189062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 15 - 249
Target Start/End: Original strand, 42346932 - 42347165
Alignment:
| Q |
15 |
acattttatttggcatcattcaaatcatttgcatttacaggagagaggggtgcaaaatctggagaagatatatttaaagatactggtgggggagtagtag |
114 |
Q |
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| T |
42346932 |
acatttaatctggcgtcattcaatgaatttgcatttacaggagagaggggtgcaaaatctggggaagatatatttaaagatgctggtggaggagtcg--- |
42347028 |
T |
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| Q |
115 |
gcattggcagacttgatggagttcttccagctgcagcattcttcgccatctgccaaaatgttaaaatcaattgtcaattgtcaaatactcaactgtac-- |
212 |
Q |
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| T |
42347029 |
gcattggcatgcttgacggagttcttccagctgcagcattcttcgccatctgccgaaatgttaaaatcaattgccaattgtcaaatactcaactgtactc |
42347128 |
T |
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| Q |
213 |
-tcacaatcatgaacatagaaaaacataatgcaggttc |
249 |
Q |
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| T |
42347129 |
gtcacaatcataaacatagaaata-ataatgcaggttc |
42347165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 261 - 313
Target Start/End: Original strand, 42347218 - 42347270
Alignment:
| Q |
261 |
agtgcgaaatgcctcactaacattttgtagctgattaaatatgtcaacctatg |
313 |
Q |
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| T |
42347218 |
agtgcgaaatgcctcactggcattttgaagctgatcaaatatgtcaacctatg |
42347270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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