View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20130_low_3 (Length: 244)
Name: NF20130_low_3
Description: NF20130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20130_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 39323499 - 39323553
Alignment:
| Q |
1 |
cactaaaagcctccctaaaaaccagaacaaacagcatgcaaactccaagtttaat |
55 |
Q |
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| T |
39323499 |
cactaaaagcctctctaaaaaccagaacaaacagcatgcaaactccaagtttaat |
39323553 |
T |
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Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 39323675 - 39323723
Alignment:
| Q |
177 |
ctatgatatgattcaaaggctagaaacaaaacaaataattgcagcacag |
225 |
Q |
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| T |
39323675 |
ctatgatatgattcaaaggctagaaacaaaacaaataattgcagcacag |
39323723 |
T |
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